Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0557
         (746 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42846-3|AAA83602.1|  190|Caenorhabditis elegans C. elegans PRL-...    35   0.053
AF063401-1|AAC17103.1|  190|Caenorhabditis elegans putative pren...    35   0.053
AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical ...    33   0.16 
AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical ...    33   0.16 
Z81567-5|CAB04588.2|  154|Caenorhabditis elegans Hypothetical pr...    30   1.5  
U20864-7|AAK68357.1|  859|Caenorhabditis elegans Hypothetical pr...    29   4.6  
U20864-6|AAK68356.1| 1000|Caenorhabditis elegans Hypothetical pr...    29   4.6  
AF038605-2|AAB92020.1|  698|Caenorhabditis elegans Hypothetical ...    28   8.1  
AF003385-1|AAB54243.1|  884|Caenorhabditis elegans Hypothetical ...    28   8.1  

>U42846-3|AAA83602.1|  190|Caenorhabditis elegans C. elegans PRL-1
           protein protein.
          Length = 190

 Score = 35.1 bits (77), Expect = 0.053
 Identities = 16/25 (64%), Positives = 20/25 (80%)
 Frame = +3

Query: 672 RPAPSLIEYKGMRFLITDRPSDVSI 746
           +PAPS I +  MRFLITDRP++ SI
Sbjct: 21  KPAPSEIAWGKMRFLITDRPNNSSI 45


>AF063401-1|AAC17103.1|  190|Caenorhabditis elegans putative
           prenylated protein tyrosinephosphatase protein.
          Length = 190

 Score = 35.1 bits (77), Expect = 0.053
 Identities = 16/25 (64%), Positives = 20/25 (80%)
 Frame = +3

Query: 672 RPAPSLIEYKGMRFLITDRPSDVSI 746
           +PAPS I +  MRFLITDRP++ SI
Sbjct: 21  KPAPSEIAWGKMRFLITDRPNNSSI 45


>AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical
           protein Y59A8B.9 protein.
          Length = 187

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -2

Query: 211 GPADGALLLSPSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSPA 80
           GPA GA   +PSR     +  +P +T R P+ TP+  P + +P+
Sbjct: 14  GPAAGASAKTPSRMPARSVPQKPVTTMRTPAATPAAPPTRPTPS 57


>AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical
           protein Y59A8B.7 protein.
          Length = 316

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -2

Query: 211 GPADGALLLSPSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSPA 80
           GPA GA   +PSR     +  +P +T R P+ TP+  P + +P+
Sbjct: 143 GPAAGASAKTPSRMPARSVPQKPVTTMRTPAATPAAPPTRPTPS 186


>Z81567-5|CAB04588.2|  154|Caenorhabditis elegans Hypothetical
           protein K08C9.7 protein.
          Length = 154

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = -2

Query: 184 SPSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSPASQPYTLNR 56
           SPS K+F     E G   R P+G P++S Q+ +  +QP TL +
Sbjct: 107 SPSPKYFKID--ENGKISRLPTGIPTVSIQREAFMTQPTTLRK 147


>U20864-7|AAK68357.1|  859|Caenorhabditis elegans Hypothetical
           protein F32A5.2b protein.
          Length = 859

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = +3

Query: 219 PVAAVTRRTSRTFHIPTHHQLP*IRSPAAVEHSQQFSC*SF*RAYVSE*FNLICFHILNF 398
           P+ AV   T RTF  PT       ++PA    +++F+     R++++   N  C  I+N 
Sbjct: 205 PLPAVFFTTRRTFPPPTTTTTTTTQAPATTHFTREFTPPPTTRSFINTGSNARCRDIIND 264

Query: 399 CLIA 410
            ++A
Sbjct: 265 PIVA 268


>U20864-6|AAK68356.1| 1000|Caenorhabditis elegans Hypothetical
           protein F32A5.2a protein.
          Length = 1000

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = +3

Query: 219 PVAAVTRRTSRTFHIPTHHQLP*IRSPAAVEHSQQFSC*SF*RAYVSE*FNLICFHILNF 398
           P+ AV   T RTF  PT       ++PA    +++F+     R++++   N  C  I+N 
Sbjct: 346 PLPAVFFTTRRTFPPPTTTTTTTTQAPATTHFTREFTPPPTTRSFINTGSNARCRDIIND 405

Query: 399 CLIA 410
            ++A
Sbjct: 406 PIVA 409


>AF038605-2|AAB92020.1|  698|Caenorhabditis elegans Hypothetical
           protein C02B10.5 protein.
          Length = 698

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/66 (27%), Positives = 28/66 (42%)
 Frame = -2

Query: 256 KVREVRLVTAATGSMGPADGALLLSPSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSPAS 77
           ++R+++   AA GSM P+  +    P   H+      PG  P  P G P  +     P  
Sbjct: 378 QMRQMQQAAAAAGSMPPSYPSPGQYPGPMHY------PGMPPMMPPGAPFSAGASYPPMG 431

Query: 76  QPYTLN 59
            P+  N
Sbjct: 432 GPFPPN 437


>AF003385-1|AAB54243.1|  884|Caenorhabditis elegans Hypothetical
           protein R08F11.1 protein.
          Length = 884

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = +1

Query: 514 GNRVTVCLFDCDGTVRRL*SEV 579
           G++VT CLFD +GT  RL S++
Sbjct: 305 GSKVTTCLFDPNGTGGRLWSDL 326


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,427,639
Number of Sequences: 27780
Number of extensions: 413811
Number of successful extensions: 1237
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1237
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)