BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0556 (752 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 30 0.41 SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ... 29 0.94 SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 28 1.6 SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce... 28 1.6 SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 3.8 SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 27 3.8 SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 5.0 SPAC652.01 |||BC10 family protein|Schizosaccharomyces pombe|chr ... 25 8.8 SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 25 8.8 >SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit Cct1|Schizosaccharomyces pombe|chr 2|||Manual Length = 556 Score = 29.9 bits (64), Expect = 0.41 Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Frame = +1 Query: 529 YQIPTEVTIPFVNGKITEYKNVLSATPSIETLLLNQVSTSIGPLG-QQQLVLAAESTELA 705 +Q P E T+ F++G+ ++V + T + N V +S+GP+G + LV + Sbjct: 2 FQAPRESTL-FLSGEKISGEDVRNQNVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVT 60 Query: 706 ENGATKL 726 +GAT L Sbjct: 61 NDGATIL 67 >SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces pombe|chr 3|||Manual Length = 547 Score = 28.7 bits (61), Expect = 0.94 Identities = 17/54 (31%), Positives = 29/54 (53%) Frame = +3 Query: 303 GLHLEQLHRLLDRNYQDYLPRPQLLGQVRPGQRPGLVPAQPRVEYQADKEAHLK 464 GL LE+++ L + ++PRP+ LGQ Q+ L ++ Q + AHL+ Sbjct: 457 GLTLEEINELYLSGAKPWMPRPENLGQAAKQQQEVLEKSR---GVQGESAAHLE 507 >SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces pombe|chr 3|||Manual Length = 2344 Score = 27.9 bits (59), Expect = 1.6 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = +3 Query: 90 STKRPEPEPETQAPSTQKPRPGSRFN 167 S RP PEP +PST++P P S F+ Sbjct: 517 SLARPYPEPALVSPSTERP-PRSSFS 541 >SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces pombe|chr 2|||Manual Length = 610 Score = 27.9 bits (59), Expect = 1.6 Identities = 10/25 (40%), Positives = 16/25 (64%) Frame = +3 Query: 507 IRKDYYYLSNTNRGHYSFCKRQNNG 581 I+ YY NT++ H+ C+R+N G Sbjct: 503 IKTLYYPKYNTSKEHFEACRRENGG 527 >SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual Length = 4717 Score = 26.6 bits (56), Expect = 3.8 Identities = 12/27 (44%), Positives = 18/27 (66%) Frame = +3 Query: 312 LEQLHRLLDRNYQDYLPRPQLLGQVRP 392 LE L+RLLD N + ++P Q+L + P Sbjct: 978 LEALNRLLDDNRELFIPETQVLVKPHP 1004 >SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual Length = 658 Score = 26.6 bits (56), Expect = 3.8 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 2/71 (2%) Frame = +1 Query: 520 TITYQIPTEVTIPFVNGKITEYKNVLSATPSIETLLLNQVSTSIGPLGQQQLVL--AAES 693 T+T + TI + T + + TP +ET + V T P+ + +L AA + Sbjct: 140 TMTTPMEETTTILPMAAMTTPMEETTTTTPMVETTTIPTVETMTTPMVEAMTILPMAAMT 199 Query: 694 TELAENGATKL 726 T + E T + Sbjct: 200 TPMEETTTTPM 210 >SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Schizosaccharomyces pombe|chr 1|||Manual Length = 1995 Score = 26.2 bits (55), Expect = 5.0 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 3/54 (5%) Frame = +3 Query: 24 KRQVN-TANRRYTNFRRPGLKGTSTKR-PEPEPETQAPSTQKPRPGS-RFNKGT 176 KR V+ NR+Y+ RP + P P + AP +Q P P S + GT Sbjct: 618 KRSVSQNYNRQYSFQPRPATPSNPPRSLPPPSGQVNAPMSQTPNPISFAYQHGT 671 >SPAC652.01 |||BC10 family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 108 Score = 25.4 bits (53), Expect = 8.8 Identities = 10/19 (52%), Positives = 11/19 (57%) Frame = -1 Query: 425 WLCGYEPWSLPWTDLT*KL 369 WL G E +PW D T KL Sbjct: 90 WLAGKESIHIPWLDATIKL 108 >SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces pombe|chr 2|||Manual Length = 1428 Score = 25.4 bits (53), Expect = 8.8 Identities = 13/44 (29%), Positives = 23/44 (52%) Frame = +1 Query: 580 EYKNVLSATPSIETLLLNQVSTSIGPLGQQQLVLAAESTELAEN 711 ++ N + TP+ ET NQV S+ + L ++ T+L E+ Sbjct: 245 DFSNDIKHTPNKETQPSNQVDDSLKSKDSKPLTMSEVLTQLPED 288 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,617,363 Number of Sequences: 5004 Number of extensions: 49400 Number of successful extensions: 141 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 134 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 141 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 359287726 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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