Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0556
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni...    30   0.41 
SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ...    29   0.94 
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    28   1.6  
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    28   1.6  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   3.8  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    27   3.8  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   5.0  
SPAC652.01 |||BC10 family protein|Schizosaccharomyces pombe|chr ...    25   8.8  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    25   8.8  

>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
           Cct1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = +1

Query: 529 YQIPTEVTIPFVNGKITEYKNVLSATPSIETLLLNQVSTSIGPLG-QQQLVLAAESTELA 705
           +Q P E T+ F++G+    ++V +      T + N V +S+GP+G  + LV       + 
Sbjct: 2   FQAPRESTL-FLSGEKISGEDVRNQNVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVT 60

Query: 706 ENGATKL 726
            +GAT L
Sbjct: 61  NDGATIL 67


>SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 547

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = +3

Query: 303 GLHLEQLHRLLDRNYQDYLPRPQLLGQVRPGQRPGLVPAQPRVEYQADKEAHLK 464
           GL LE+++ L     + ++PRP+ LGQ    Q+  L  ++     Q +  AHL+
Sbjct: 457 GLTLEEINELYLSGAKPWMPRPENLGQAAKQQQEVLEKSR---GVQGESAAHLE 507


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 90  STKRPEPEPETQAPSTQKPRPGSRFN 167
           S  RP PEP   +PST++P P S F+
Sbjct: 517 SLARPYPEPALVSPSTERP-PRSSFS 541


>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 507 IRKDYYYLSNTNRGHYSFCKRQNNG 581
           I+  YY   NT++ H+  C+R+N G
Sbjct: 503 IKTLYYPKYNTSKEHFEACRRENGG 527


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 312  LEQLHRLLDRNYQDYLPRPQLLGQVRP 392
            LE L+RLLD N + ++P  Q+L +  P
Sbjct: 978  LEALNRLLDDNRELFIPETQVLVKPHP 1004


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
 Frame = +1

Query: 520 TITYQIPTEVTIPFVNGKITEYKNVLSATPSIETLLLNQVSTSIGPLGQQQLVL--AAES 693
           T+T  +    TI  +    T  +   + TP +ET  +  V T   P+ +   +L  AA +
Sbjct: 140 TMTTPMEETTTILPMAAMTTPMEETTTTTPMVETTTIPTVETMTTPMVEAMTILPMAAMT 199

Query: 694 TELAENGATKL 726
           T + E   T +
Sbjct: 200 TPMEETTTTPM 210


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = +3

Query: 24  KRQVN-TANRRYTNFRRPGLKGTSTKR-PEPEPETQAPSTQKPRPGS-RFNKGT 176
           KR V+   NR+Y+   RP       +  P P  +  AP +Q P P S  +  GT
Sbjct: 618 KRSVSQNYNRQYSFQPRPATPSNPPRSLPPPSGQVNAPMSQTPNPISFAYQHGT 671


>SPAC652.01 |||BC10 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 108

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 425 WLCGYEPWSLPWTDLT*KL 369
           WL G E   +PW D T KL
Sbjct: 90  WLAGKESIHIPWLDATIKL 108


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +1

Query: 580 EYKNVLSATPSIETLLLNQVSTSIGPLGQQQLVLAAESTELAEN 711
           ++ N +  TP+ ET   NQV  S+     + L ++   T+L E+
Sbjct: 245 DFSNDIKHTPNKETQPSNQVDDSLKSKDSKPLTMSEVLTQLPED 288


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,617,363
Number of Sequences: 5004
Number of extensions: 49400
Number of successful extensions: 141
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)