BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0556 (752 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 06_03_0351 - 19801191-19801691,19801724-19801792,19802216-19802431 32 0.56 10_08_0917 - 21550332-21550685,21550726-21550765,21551766-215517... 31 1.3 02_05_0932 - 32841331-32842242 30 2.3 11_06_0215 - 21332429-21333037,21333605-21333649 29 5.2 07_03_0797 + 21575948-21576042,21576140-21576902,21577134-215773... 29 5.2 01_06_1535 + 38057802-38057999,38058338-38058437,38058730-380588... 29 5.2 11_06_0722 - 26678873-26680843 28 6.9 08_02_0516 + 18080706-18080760,18081796-18081885,18082479-180825... 28 6.9 07_01_0252 + 1883709-1885306,1886338-1886466,1887319-1887341,188... 28 6.9 02_01_0408 - 2972240-2975380 28 6.9 09_02_0252 - 6315834-6315959,6316074-6317018 28 9.2 >06_03_0351 - 19801191-19801691,19801724-19801792,19802216-19802431 Length = 261 Score = 31.9 bits (69), Expect = 0.56 Identities = 15/35 (42%), Positives = 21/35 (60%) Frame = +3 Query: 72 PGLKGTSTKRPEPEPETQAPSTQKPRPGSRFNKGT 176 PG G S KRP+ ++PS ++P+P SRF T Sbjct: 144 PGTSGVSKKRPKG---VKSPSKRQPKPKSRFTDAT 175 >10_08_0917 - 21550332-21550685,21550726-21550765,21551766-21551767, 21552094-21552633 Length = 311 Score = 30.7 bits (66), Expect = 1.3 Identities = 16/54 (29%), Positives = 25/54 (46%) Frame = +3 Query: 12 RRRTKRQVNTANRRYTNFRRPGLKGTSTKRPEPEPETQAPSTQKPRPGSRFNKG 173 RRR ++Q+ A+R+ RP +KG K P+ E + P G + G Sbjct: 249 RRRYEKQIRYASRKAYAEMRPRVKGRFAKVPDGELDGATPPPPSSAAGGGYEPG 302 >02_05_0932 - 32841331-32842242 Length = 303 Score = 29.9 bits (64), Expect = 2.3 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%) Frame = +3 Query: 12 RRRTKRQVNTANRRYTNFRRPGLKGTSTK---RPEPEPETQAPSTQKPRP 152 RRR Q N + ++ R P L+ T RP+P+P P Q P P Sbjct: 54 RRRRPSQCNNLSPSASSVRSPRLQKTPRPCRVRPDPQPSLLLPPPQPPPP 103 >11_06_0215 - 21332429-21333037,21333605-21333649 Length = 217 Score = 28.7 bits (61), Expect = 5.2 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = +3 Query: 72 PGLKGTSTKRPEPEPETQAPSTQKPRPGSRFNKGT 176 PG S KRP + ++PS ++P+P SRF T Sbjct: 98 PGTSRVSKKRPR---DVKSPSKRQPKPKSRFTDVT 129 >07_03_0797 + 21575948-21576042,21576140-21576902,21577134-21577327, 21577667-21577700,21578421-21578485,21579032-21579524 Length = 547 Score = 28.7 bits (61), Expect = 5.2 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 4/62 (6%) Frame = +3 Query: 9 FRRRTKRQ-VNTANRRYTNFRRPGLKGTSTKRPEPEPETQAPSTQKPRP---GSRFNKGT 176 +RR T R V RR N RR ++ PEPET + P+P RF KG Sbjct: 426 YRRDTDRSDVYRPTRREDN-RRVARDVEKPEQQRPEPETWRKPVEPPKPEVVAPRFGKGA 484 Query: 177 TS 182 ++ Sbjct: 485 SA 486 >01_06_1535 + 38057802-38057999,38058338-38058437,38058730-38058890, 38059166-38059363,38059442-38059534,38059732-38059854, 38060637-38060884,38061004-38061175,38061407-38061493, 38061523-38061786,38062415-38062577,38062839-38062926, 38063010-38063079,38063566-38063694,38063773-38063811, 38065539-38065760,38065935-38065999,38066095-38066288, 38066539-38066805,38066908-38066995,38067091-38067216, 38067291-38067400,38067523-38067671 Length = 1117 Score = 28.7 bits (61), Expect = 5.2 Identities = 12/34 (35%), Positives = 18/34 (52%) Frame = +3 Query: 54 YTNFRRPGLKGTSTKRPEPEPETQAPSTQKPRPG 155 YT+ + ST +P+PE + P T+ P PG Sbjct: 702 YTSQHEIAQQTLSTSERQPQPEKKPPRTRPPLPG 735 >11_06_0722 - 26678873-26680843 Length = 656 Score = 28.3 bits (60), Expect = 6.9 Identities = 14/31 (45%), Positives = 18/31 (58%) Frame = -2 Query: 133 DGACVSGSGSGRLVDVPFSPGRLKFVYRRFA 41 +G+ +SG GRL DV S K + RRFA Sbjct: 191 NGSLLSGGNGGRLKDVCLSMALSKMLNRRFA 221 >08_02_0516 + 18080706-18080760,18081796-18081885,18082479-18082573, 18083658-18083726,18083812-18084393 Length = 296 Score = 28.3 bits (60), Expect = 6.9 Identities = 14/44 (31%), Positives = 20/44 (45%) Frame = +3 Query: 21 TKRQVNTANRRYTNFRRPGLKGTSTKRPEPEPETQAPSTQKPRP 152 T+ Q +R R + + K EPEPE Q + Q P+P Sbjct: 117 TEEQAVAEQQRMFAEARARMNNGAAKPKEPEPEAQQQTQQPPQP 160 >07_01_0252 + 1883709-1885306,1886338-1886466,1887319-1887341, 1887455-1888023 Length = 772 Score = 28.3 bits (60), Expect = 6.9 Identities = 14/37 (37%), Positives = 19/37 (51%) Frame = +3 Query: 63 FRRPGLKGTSTKRPEPEPETQAPSTQKPRPGSRFNKG 173 +RR G++ P P PET +P T SR +KG Sbjct: 276 YRRAGVRLGDALAPAPSPET-SPGTTTKNNNSRISKG 311 >02_01_0408 - 2972240-2975380 Length = 1046 Score = 28.3 bits (60), Expect = 6.9 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%) Frame = +1 Query: 526 TYQIPTEVTIPFVNGKITEYKNVLSATPSIETLLLNQVSTSIGP-LGQQQLVLAAE 690 TY P+ +P +GK +Y+ +A P++ L LN+ I P +GQ ++++ + Sbjct: 531 TYSEPSFFELPVYDGKFLQYR-TRTAFPTLLNLSLNKFMGVIPPQIGQLKMLVVLD 585 >09_02_0252 - 6315834-6315959,6316074-6317018 Length = 356 Score = 27.9 bits (59), Expect = 9.2 Identities = 13/50 (26%), Positives = 22/50 (44%) Frame = +3 Query: 15 RRTKRQVNTANRRYTNFRRPGLKGTSTKRPEPEPETQAPSTQKPRPGSRF 164 RR +R+ + RY + PG +S + T +P +PR + F Sbjct: 23 RRPRRRTREVSSRYLSSTTPGPVPSSPRLSTSSSRTPSPRAHRPRAATPF 72 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,675,844 Number of Sequences: 37544 Number of extensions: 315050 Number of successful extensions: 1373 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 1035 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1278 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 2004270760 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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