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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0556
         (752 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0351 - 19801191-19801691,19801724-19801792,19802216-19802431     32   0.56 
10_08_0917 - 21550332-21550685,21550726-21550765,21551766-215517...    31   1.3  
02_05_0932 - 32841331-32842242                                         30   2.3  
11_06_0215 - 21332429-21333037,21333605-21333649                       29   5.2  
07_03_0797 + 21575948-21576042,21576140-21576902,21577134-215773...    29   5.2  
01_06_1535 + 38057802-38057999,38058338-38058437,38058730-380588...    29   5.2  
11_06_0722 - 26678873-26680843                                         28   6.9  
08_02_0516 + 18080706-18080760,18081796-18081885,18082479-180825...    28   6.9  
07_01_0252 + 1883709-1885306,1886338-1886466,1887319-1887341,188...    28   6.9  
02_01_0408 - 2972240-2975380                                           28   6.9  
09_02_0252 - 6315834-6315959,6316074-6317018                           28   9.2  

>06_03_0351 - 19801191-19801691,19801724-19801792,19802216-19802431
          Length = 261

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +3

Query: 72  PGLKGTSTKRPEPEPETQAPSTQKPRPGSRFNKGT 176
           PG  G S KRP+     ++PS ++P+P SRF   T
Sbjct: 144 PGTSGVSKKRPKG---VKSPSKRQPKPKSRFTDAT 175


>10_08_0917 -
           21550332-21550685,21550726-21550765,21551766-21551767,
           21552094-21552633
          Length = 311

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +3

Query: 12  RRRTKRQVNTANRRYTNFRRPGLKGTSTKRPEPEPETQAPSTQKPRPGSRFNKG 173
           RRR ++Q+  A+R+     RP +KG   K P+ E +   P       G  +  G
Sbjct: 249 RRRYEKQIRYASRKAYAEMRPRVKGRFAKVPDGELDGATPPPPSSAAGGGYEPG 302


>02_05_0932 - 32841331-32842242
          Length = 303

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = +3

Query: 12  RRRTKRQVNTANRRYTNFRRPGLKGTSTK---RPEPEPETQAPSTQKPRP 152
           RRR   Q N  +   ++ R P L+ T      RP+P+P    P  Q P P
Sbjct: 54  RRRRPSQCNNLSPSASSVRSPRLQKTPRPCRVRPDPQPSLLLPPPQPPPP 103


>11_06_0215 - 21332429-21333037,21333605-21333649
          Length = 217

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 72  PGLKGTSTKRPEPEPETQAPSTQKPRPGSRFNKGT 176
           PG    S KRP    + ++PS ++P+P SRF   T
Sbjct: 98  PGTSRVSKKRPR---DVKSPSKRQPKPKSRFTDVT 129


>07_03_0797 +
           21575948-21576042,21576140-21576902,21577134-21577327,
           21577667-21577700,21578421-21578485,21579032-21579524
          Length = 547

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
 Frame = +3

Query: 9   FRRRTKRQ-VNTANRRYTNFRRPGLKGTSTKRPEPEPETQAPSTQKPRP---GSRFNKGT 176
           +RR T R  V    RR  N RR        ++  PEPET     + P+P     RF KG 
Sbjct: 426 YRRDTDRSDVYRPTRREDN-RRVARDVEKPEQQRPEPETWRKPVEPPKPEVVAPRFGKGA 484

Query: 177 TS 182
           ++
Sbjct: 485 SA 486


>01_06_1535 +
           38057802-38057999,38058338-38058437,38058730-38058890,
           38059166-38059363,38059442-38059534,38059732-38059854,
           38060637-38060884,38061004-38061175,38061407-38061493,
           38061523-38061786,38062415-38062577,38062839-38062926,
           38063010-38063079,38063566-38063694,38063773-38063811,
           38065539-38065760,38065935-38065999,38066095-38066288,
           38066539-38066805,38066908-38066995,38067091-38067216,
           38067291-38067400,38067523-38067671
          Length = 1117

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 54  YTNFRRPGLKGTSTKRPEPEPETQAPSTQKPRPG 155
           YT+      +  ST   +P+PE + P T+ P PG
Sbjct: 702 YTSQHEIAQQTLSTSERQPQPEKKPPRTRPPLPG 735


>11_06_0722 - 26678873-26680843
          Length = 656

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 133 DGACVSGSGSGRLVDVPFSPGRLKFVYRRFA 41
           +G+ +SG   GRL DV  S    K + RRFA
Sbjct: 191 NGSLLSGGNGGRLKDVCLSMALSKMLNRRFA 221


>08_02_0516 +
           18080706-18080760,18081796-18081885,18082479-18082573,
           18083658-18083726,18083812-18084393
          Length = 296

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +3

Query: 21  TKRQVNTANRRYTNFRRPGLKGTSTKRPEPEPETQAPSTQKPRP 152
           T+ Q     +R     R  +   + K  EPEPE Q  + Q P+P
Sbjct: 117 TEEQAVAEQQRMFAEARARMNNGAAKPKEPEPEAQQQTQQPPQP 160


>07_01_0252 +
           1883709-1885306,1886338-1886466,1887319-1887341,
           1887455-1888023
          Length = 772

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 63  FRRPGLKGTSTKRPEPEPETQAPSTQKPRPGSRFNKG 173
           +RR G++      P P PET +P T      SR +KG
Sbjct: 276 YRRAGVRLGDALAPAPSPET-SPGTTTKNNNSRISKG 311


>02_01_0408 - 2972240-2975380
          Length = 1046

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +1

Query: 526 TYQIPTEVTIPFVNGKITEYKNVLSATPSIETLLLNQVSTSIGP-LGQQQLVLAAE 690
           TY  P+   +P  +GK  +Y+   +A P++  L LN+    I P +GQ ++++  +
Sbjct: 531 TYSEPSFFELPVYDGKFLQYR-TRTAFPTLLNLSLNKFMGVIPPQIGQLKMLVVLD 585


>09_02_0252 - 6315834-6315959,6316074-6317018
          Length = 356

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = +3

Query: 15  RRTKRQVNTANRRYTNFRRPGLKGTSTKRPEPEPETQAPSTQKPRPGSRF 164
           RR +R+    + RY +   PG   +S +       T +P   +PR  + F
Sbjct: 23  RRPRRRTREVSSRYLSSTTPGPVPSSPRLSTSSSRTPSPRAHRPRAATPF 72


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,675,844
Number of Sequences: 37544
Number of extensions: 315050
Number of successful extensions: 1373
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1278
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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