Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0556
(752 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0351 - 19801191-19801691,19801724-19801792,19802216-19802431 32 0.56
10_08_0917 - 21550332-21550685,21550726-21550765,21551766-215517... 31 1.3
02_05_0932 - 32841331-32842242 30 2.3
11_06_0215 - 21332429-21333037,21333605-21333649 29 5.2
07_03_0797 + 21575948-21576042,21576140-21576902,21577134-215773... 29 5.2
01_06_1535 + 38057802-38057999,38058338-38058437,38058730-380588... 29 5.2
11_06_0722 - 26678873-26680843 28 6.9
08_02_0516 + 18080706-18080760,18081796-18081885,18082479-180825... 28 6.9
07_01_0252 + 1883709-1885306,1886338-1886466,1887319-1887341,188... 28 6.9
02_01_0408 - 2972240-2975380 28 6.9
09_02_0252 - 6315834-6315959,6316074-6317018 28 9.2
>06_03_0351 - 19801191-19801691,19801724-19801792,19802216-19802431
Length = 261
Score = 31.9 bits (69), Expect = 0.56
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 72 PGLKGTSTKRPEPEPETQAPSTQKPRPGSRFNKGT 176
PG G S KRP+ ++PS ++P+P SRF T
Sbjct: 144 PGTSGVSKKRPKG---VKSPSKRQPKPKSRFTDAT 175
>10_08_0917 -
21550332-21550685,21550726-21550765,21551766-21551767,
21552094-21552633
Length = 311
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +3
Query: 12 RRRTKRQVNTANRRYTNFRRPGLKGTSTKRPEPEPETQAPSTQKPRPGSRFNKG 173
RRR ++Q+ A+R+ RP +KG K P+ E + P G + G
Sbjct: 249 RRRYEKQIRYASRKAYAEMRPRVKGRFAKVPDGELDGATPPPPSSAAGGGYEPG 302
>02_05_0932 - 32841331-32842242
Length = 303
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = +3
Query: 12 RRRTKRQVNTANRRYTNFRRPGLKGTSTK---RPEPEPETQAPSTQKPRP 152
RRR Q N + ++ R P L+ T RP+P+P P Q P P
Sbjct: 54 RRRRPSQCNNLSPSASSVRSPRLQKTPRPCRVRPDPQPSLLLPPPQPPPP 103
>11_06_0215 - 21332429-21333037,21333605-21333649
Length = 217
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 72 PGLKGTSTKRPEPEPETQAPSTQKPRPGSRFNKGT 176
PG S KRP + ++PS ++P+P SRF T
Sbjct: 98 PGTSRVSKKRPR---DVKSPSKRQPKPKSRFTDVT 129
>07_03_0797 +
21575948-21576042,21576140-21576902,21577134-21577327,
21577667-21577700,21578421-21578485,21579032-21579524
Length = 547
Score = 28.7 bits (61), Expect = 5.2
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Frame = +3
Query: 9 FRRRTKRQ-VNTANRRYTNFRRPGLKGTSTKRPEPEPETQAPSTQKPRP---GSRFNKGT 176
+RR T R V RR N RR ++ PEPET + P+P RF KG
Sbjct: 426 YRRDTDRSDVYRPTRREDN-RRVARDVEKPEQQRPEPETWRKPVEPPKPEVVAPRFGKGA 484
Query: 177 TS 182
++
Sbjct: 485 SA 486
>01_06_1535 +
38057802-38057999,38058338-38058437,38058730-38058890,
38059166-38059363,38059442-38059534,38059732-38059854,
38060637-38060884,38061004-38061175,38061407-38061493,
38061523-38061786,38062415-38062577,38062839-38062926,
38063010-38063079,38063566-38063694,38063773-38063811,
38065539-38065760,38065935-38065999,38066095-38066288,
38066539-38066805,38066908-38066995,38067091-38067216,
38067291-38067400,38067523-38067671
Length = 1117
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 54 YTNFRRPGLKGTSTKRPEPEPETQAPSTQKPRPG 155
YT+ + ST +P+PE + P T+ P PG
Sbjct: 702 YTSQHEIAQQTLSTSERQPQPEKKPPRTRPPLPG 735
>11_06_0722 - 26678873-26680843
Length = 656
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -2
Query: 133 DGACVSGSGSGRLVDVPFSPGRLKFVYRRFA 41
+G+ +SG GRL DV S K + RRFA
Sbjct: 191 NGSLLSGGNGGRLKDVCLSMALSKMLNRRFA 221
>08_02_0516 +
18080706-18080760,18081796-18081885,18082479-18082573,
18083658-18083726,18083812-18084393
Length = 296
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +3
Query: 21 TKRQVNTANRRYTNFRRPGLKGTSTKRPEPEPETQAPSTQKPRP 152
T+ Q +R R + + K EPEPE Q + Q P+P
Sbjct: 117 TEEQAVAEQQRMFAEARARMNNGAAKPKEPEPEAQQQTQQPPQP 160
>07_01_0252 +
1883709-1885306,1886338-1886466,1887319-1887341,
1887455-1888023
Length = 772
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 63 FRRPGLKGTSTKRPEPEPETQAPSTQKPRPGSRFNKG 173
+RR G++ P P PET +P T SR +KG
Sbjct: 276 YRRAGVRLGDALAPAPSPET-SPGTTTKNNNSRISKG 311
>02_01_0408 - 2972240-2975380
Length = 1046
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +1
Query: 526 TYQIPTEVTIPFVNGKITEYKNVLSATPSIETLLLNQVSTSIGP-LGQQQLVLAAE 690
TY P+ +P +GK +Y+ +A P++ L LN+ I P +GQ ++++ +
Sbjct: 531 TYSEPSFFELPVYDGKFLQYR-TRTAFPTLLNLSLNKFMGVIPPQIGQLKMLVVLD 585
>09_02_0252 - 6315834-6315959,6316074-6317018
Length = 356
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = +3
Query: 15 RRTKRQVNTANRRYTNFRRPGLKGTSTKRPEPEPETQAPSTQKPRPGSRF 164
RR +R+ + RY + PG +S + T +P +PR + F
Sbjct: 23 RRPRRRTREVSSRYLSSTTPGPVPSSPRLSTSSSRTPSPRAHRPRAATPF 72
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,675,844
Number of Sequences: 37544
Number of extensions: 315050
Number of successful extensions: 1373
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1278
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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