Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0556
(752 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3924| Best HMM Match : E-MAP-115 (HMM E-Value=4.2) 33 0.25
SB_30534| Best HMM Match : EGF (HMM E-Value=0.12) 32 0.43
SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_34070| Best HMM Match : Mucin (HMM E-Value=5.8) 31 1.3
SB_51968| Best HMM Match : PT (HMM E-Value=0.54) 30 1.8
SB_12390| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05) 29 4.1
SB_55367| Best HMM Match : Granulin (HMM E-Value=0.00023) 29 4.1
SB_46036| Best HMM Match : PSRT (HMM E-Value=1) 29 5.4
SB_40594| Best HMM Match : Extensin_2 (HMM E-Value=0.083) 29 5.4
SB_29369| Best HMM Match : GIY-YIG (HMM E-Value=0.56) 29 5.4
SB_15303| Best HMM Match : Orexin_rec2 (HMM E-Value=6) 29 5.4
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_31049| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_8863| Best HMM Match : DAO (HMM E-Value=0.04) 28 7.1
SB_47833| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_18427| Best HMM Match : Peptidase_C54 (HMM E-Value=1.3) 28 7.1
SB_40786| Best HMM Match : WSC (HMM E-Value=0.44) 28 9.4
SB_39876| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_34932| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.38) 28 9.4
>SB_3924| Best HMM Match : E-MAP-115 (HMM E-Value=4.2)
Length = 344
Score = 33.1 bits (72), Expect = 0.25
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = +3
Query: 15 RRTKRQVNTANRRYTNFRRPGLKGTSTKRPEPEPETQAPSTQKPRPGSRFNKGTTS 182
R+TKRQ N + + + G G K +P+ QAP +PR S KG S
Sbjct: 236 RKTKRQANRKTKGQASHKTKGQAGRKIKISKPQNHKQAP---RPRQASPKTKGQAS 288
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +3
Query: 27 RQVNTANRRYTNFRRPGLKGT-STKRPEPEPETQAPSTQKPRPGSRFNKGTTSR 185
RQ + N+R RP + T TK +P+P+ Q +PR SR K +R
Sbjct: 185 RQESRKNKRQA--ARPKRQATCKTKTIKPQPQDQGKQAARPRQASRKTKRQANR 236
>SB_30534| Best HMM Match : EGF (HMM E-Value=0.12)
Length = 521
Score = 32.3 bits (70), Expect = 0.43
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 66 RRPGLKGTSTKRPEPEPETQAPSTQKPRPGSR 161
++P + + +P P TQ P+TQ+PRP +R
Sbjct: 257 KQPATERPKPRTEKPRPITQPPTTQRPRPKTR 288
>SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2174
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Frame = +3
Query: 45 NRRYTNFRRPGLK-GTSTKRPEPEPETQAPSTQK---PRPGSRFNKG 173
N R T F P L T+ +RP P PET+ P + PRP ++G
Sbjct: 1729 NTRTTTFIDPRLPVNTTDRRPRPGPETEPPRRSRAPPPRPPPPSSRG 1775
>SB_34070| Best HMM Match : Mucin (HMM E-Value=5.8)
Length = 541
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +3
Query: 12 RRRTKRQVNTANRRYTNFRRPGLKGTSTKRPEPEPETQAPSTQKPRPGSR 161
R T R+ RRY RR G RP+ P+T+ + K RP +R
Sbjct: 216 RYLTGRRRGRVTRRYLTGRRRGRVTRPKTRPKTRPKTRPKTRPKTRPKTR 265
>SB_51968| Best HMM Match : PT (HMM E-Value=0.54)
Length = 514
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = +3
Query: 15 RRTKRQVNTANRRYTNFRRPGLKGTSTKRPEPEPETQAPSTQKP 146
R TK + T RR T RP K T PE EPE + +T +P
Sbjct: 205 RPTKAKPTTMKRRPTE--RPTKKPTKPLLPEVEPEEEEKATPRP 246
>SB_12390| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 868
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/24 (54%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Frame = +3
Query: 363 RPQLLGQVRPGQRPGLVP-AQPRV 431
RP++ ++RPG RPG P A+PRV
Sbjct: 181 RPRIRPEIRPGARPGARPGARPRV 204
>SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = +3
Query: 21 TKRQVNTANRRYTNFRRPGLKGTSTKRPEPEPETQAPSTQKPRPGS 158
T R +T+ R + TST R T APST PR GS
Sbjct: 62 TTRAPSTSTPRAGSTTTTSAPSTSTPRTGSTTTTSAPSTSTPRTGS 107
>SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)
Length = 1960
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/63 (23%), Positives = 31/63 (49%)
Frame = +1
Query: 517 ITITYQIPTEVTIPFVNGKITEYKNVLSATPSIETLLLNQVSTSIGPLGQQQLVLAAEST 696
+++T + + IP ++ I Y + ATP+ L+ + +S+S + + EST
Sbjct: 945 VSLTRSLLSTTLIPSISTSILPYNTTVIATPNTTRLVTSMISSSTVNVSAISTTSSIEST 1004
Query: 697 ELA 705
+A
Sbjct: 1005 IMA 1007
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/63 (23%), Positives = 30/63 (47%)
Frame = +1
Query: 517 ITITYQIPTEVTIPFVNGKITEYKNVLSATPSIETLLLNQVSTSIGPLGQQQLVLAAEST 696
+++T + + IP ++ I Y + ATP+ L + +S+S + + EST
Sbjct: 744 VSLTRSLLSTTLIPSISTSILPYNTTVIATPNTTRLATSTISSSTVNVSAISTTSSIEST 803
Query: 697 ELA 705
+A
Sbjct: 804 IMA 806
>SB_55367| Best HMM Match : Granulin (HMM E-Value=0.00023)
Length = 565
Score = 29.1 bits (62), Expect = 4.1
Identities = 40/139 (28%), Positives = 60/139 (43%), Gaps = 25/139 (17%)
Frame = +3
Query: 69 RPGLKGTS-TKRPEPEPE--TQAPSTQKPR----PGSRFNK----------GTTSR---- 185
RPGLKG T+RP P+ + T+ P Q+ R PG + N+ G T R
Sbjct: 408 RPGLKGDGKTRRPGPQGDGKTRRPGLQRDRKRMRPGPQSNEETRRPGFQGYGKTKRPVLE 467
Query: 186 ---NXXXXXXXXXXXXRQPFIIRGESELHRPLLHHHIEEQRPGLHLEQLHRLLDRNYQ-D 353
R+P +G+ + RP+L + +RPG L+ + ++ +Q D
Sbjct: 468 SDGKAMRPGLKGMQKMRRPGY-QGDGKTKRPVLESDGKARRPG--LKGVRKMRRPGFQGD 524
Query: 354 YLPRPQLLGQVRPGQRPGL 410
R LG R +RPGL
Sbjct: 525 GKTRRPGLGSYRKTRRPGL 543
>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
Length = 878
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +3
Query: 30 QVNTANRRYTNFRRPGLKGTSTKRPEPEPETQAPSTQKPRPGSRFNKGTTSR 185
+ + +R YT+ P + TS P P ++PS ++P P R + SR
Sbjct: 537 RTKSPSRSYTS---PRQRRTSPNNRSPPPRRRSPSPRRPSPSPRRRSTSPSR 585
>SB_40594| Best HMM Match : Extensin_2 (HMM E-Value=0.083)
Length = 440
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Frame = +3
Query: 69 RPGLKGTSTKRPEP----EPETQAPSTQKPRPGSRFNKG 173
RPG GT P P P +QAP + PRP F G
Sbjct: 386 RPGAPGTMPTGPVPLLGNPPSSQAPPARGPRPMPLFPNG 424
>SB_29369| Best HMM Match : GIY-YIG (HMM E-Value=0.56)
Length = 785
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Frame = +3
Query: 36 NTANRRYT--NFRRPGLKGTSTKRPEPEPETQAPSTQKPRPGSRFNKGTTSRN 188
N N +Y+ N P TST P+ P T P P P R + N
Sbjct: 213 NRRNNKYSRRNLPNPDNDNTSTITPQAAPNTNPPPVATPAPQRRRRRRRRKNN 265
>SB_15303| Best HMM Match : Orexin_rec2 (HMM E-Value=6)
Length = 421
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +3
Query: 21 TKRQVNTANRRYTNFRRPGLKGTSTKRPEPEPETQAPSTQKPRPGSRFNK 170
T +QV ++R+T P L ++ P+ E +A + + S+FNK
Sbjct: 40 TFKQVTAESKRWTTVSMPSLTTRTSDPSNPKRELRAVQILRRKIASKFNK 89
>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1229
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/63 (23%), Positives = 31/63 (49%)
Frame = +1
Query: 517 ITITYQIPTEVTIPFVNGKITEYKNVLSATPSIETLLLNQVSTSIGPLGQQQLVLAAEST 696
+++T + + IP ++ I Y + ATP+ L+ + +S+S + + EST
Sbjct: 543 VSLTRSLLSTTLIPSISTSILPYNTTVIATPNTTRLVTSTISSSTVNVSAISTTPSIEST 602
Query: 697 ELA 705
+A
Sbjct: 603 IMA 605
>SB_31049| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 146
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Frame = +3
Query: 36 NTANRRYT--NFRRPGLKGTSTKRPEPEPETQAPSTQKPRPGSR 161
N N +Y+ N P TST P+ P T P P P R
Sbjct: 39 NRRNNKYSRRNLPNPDNDNTSTITPQAAPNTNPPPVATPAPQRR 82
>SB_8863| Best HMM Match : DAO (HMM E-Value=0.04)
Length = 485
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 69 RPGLKGTSTKRPEPEPETQAPSTQKPRPG 155
RPG +G+ R EPEPE P ++ PG
Sbjct: 54 RPGSQGSDLNRNEPEPE---PEPRRASPG 79
>SB_47833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 302
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Frame = +3
Query: 36 NTANRRYT--NFRRPGLKGTSTKRPEPEPETQAPSTQKPRPGSR 161
N N +Y+ N P TST P+ P T P P P R
Sbjct: 11 NRRNNKYSRRNLPNPDNDNTSTITPQAAPNTNPPPVATPAPQRR 54
>SB_18427| Best HMM Match : Peptidase_C54 (HMM E-Value=1.3)
Length = 535
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Frame = +3
Query: 36 NTANRRYT--NFRRPGLKGTSTKRPEPEPETQAPSTQKPRPGSR 161
N N +Y+ N P TST P+ P T P P P R
Sbjct: 212 NRRNNKYSRRNLPNPDNDNTSTITPQAAPNTNPPPVATPAPQRR 255
>SB_40786| Best HMM Match : WSC (HMM E-Value=0.44)
Length = 230
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +3
Query: 87 TSTKRPEPEPETQAPSTQKPRP 152
T TKRP P P T+KP P
Sbjct: 138 TPTKRPSPSPTGTGTPTRKPEP 159
>SB_39876| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 761
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +3
Query: 66 RRPGLKGTSTKRPEPE-PETQAPSTQKPRP 152
++P + +TK+P E P TQ P+T++P P
Sbjct: 626 KQPTTELPTTKQPTTELPTTQEPTTERPTP 655
>SB_34932| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.38)
Length = 414
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 294 QRPGLHLEQLHRLLDRNYQDYLPRPQLLGQVRPGQRP 404
Q+ L +Q L + Q YLP+ + GQ+ PG +P
Sbjct: 157 QKQYLQPQQAGMLYGQQGQQYLPQQGVAGQMAPGAQP 193
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,652,981
Number of Sequences: 59808
Number of extensions: 368631
Number of successful extensions: 1252
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1234
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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