Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0556
         (752 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106582-7|ABD94096.1|  806|Caenorhabditis elegans Hypothetical ...    30   2.0  
AF106582-6|ABD94095.1|  834|Caenorhabditis elegans Hypothetical ...    30   2.0  
Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U52001-1|AAA96093.1|  656|Caenorhabditis elegans Feminization of...    29   4.7  
J03172-1|AAA28055.1|  656|Caenorhabditis elegans protein ( C.ele...    29   4.7  

>AF106582-7|ABD94096.1|  806|Caenorhabditis elegans Hypothetical
           protein W05F2.4b protein.
          Length = 806

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = +1

Query: 181 HVIKQQRHPV*KLHLDSLSLFVEKVNYIDRCYTII*KSKDPDFI*NN 321
           HVI Q RH     H    S F E ++Y+D+ +  + K  DPD   NN
Sbjct: 24  HVIDQARHR----HHQHRSKFKEAIDYLDQIFEDLKKECDPDDKNNN 66


>AF106582-6|ABD94095.1|  834|Caenorhabditis elegans Hypothetical
           protein W05F2.4a protein.
          Length = 834

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = +1

Query: 181 HVIKQQRHPV*KLHLDSLSLFVEKVNYIDRCYTII*KSKDPDFI*NN 321
           HVI Q RH     H    S F E ++Y+D+ +  + K  DPD   NN
Sbjct: 52  HVIDQARHR----HHQHRSKFKEAIDYLDQIFEDLKKECDPDDKNNN 94


>Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical
           protein T10B10.1 protein.
          Length = 428

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 66  RRPGLKGTSTKRPEPEPETQAPSTQKPRPGSR 161
           R P   GTS  +P P   T AP T+ P P +R
Sbjct: 283 RTPPSSGTSAPQPPPRGSTAAPGTRAP-PATR 313


>U52001-1|AAA96093.1|  656|Caenorhabditis elegans Feminization of xx
           and xo animalsprotein 1, isoform a protein.
          Length = 656

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 255 ELHRPLLHHHIEEQRPGLHLEQL 323
           ELH PLLHH +EE+ P  +  +L
Sbjct: 511 ELHIPLLHHTLEERIPDSNSAEL 533


>J03172-1|AAA28055.1|  656|Caenorhabditis elegans protein (
           C.elegans fem-1 gene,complete cds. ).
          Length = 656

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 255 ELHRPLLHHHIEEQRPGLHLEQL 323
           ELH PLLHH +EE+ P  +  +L
Sbjct: 511 ELHIPLLHHTLEERIPDSNSAEL 533


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,525,407
Number of Sequences: 27780
Number of extensions: 284498
Number of successful extensions: 1195
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1151
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)