BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0556 (752 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF106582-7|ABD94096.1| 806|Caenorhabditis elegans Hypothetical ... 30 2.0 AF106582-6|ABD94095.1| 834|Caenorhabditis elegans Hypothetical ... 30 2.0 Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical pr... 29 3.5 U52001-1|AAA96093.1| 656|Caenorhabditis elegans Feminization of... 29 4.7 J03172-1|AAA28055.1| 656|Caenorhabditis elegans protein ( C.ele... 29 4.7 >AF106582-7|ABD94096.1| 806|Caenorhabditis elegans Hypothetical protein W05F2.4b protein. Length = 806 Score = 29.9 bits (64), Expect = 2.0 Identities = 18/47 (38%), Positives = 24/47 (51%) Frame = +1 Query: 181 HVIKQQRHPV*KLHLDSLSLFVEKVNYIDRCYTII*KSKDPDFI*NN 321 HVI Q RH H S F E ++Y+D+ + + K DPD NN Sbjct: 24 HVIDQARHR----HHQHRSKFKEAIDYLDQIFEDLKKECDPDDKNNN 66 >AF106582-6|ABD94095.1| 834|Caenorhabditis elegans Hypothetical protein W05F2.4a protein. Length = 834 Score = 29.9 bits (64), Expect = 2.0 Identities = 18/47 (38%), Positives = 24/47 (51%) Frame = +1 Query: 181 HVIKQQRHPV*KLHLDSLSLFVEKVNYIDRCYTII*KSKDPDFI*NN 321 HVI Q RH H S F E ++Y+D+ + + K DPD NN Sbjct: 52 HVIDQARHR----HHQHRSKFKEAIDYLDQIFEDLKKECDPDDKNNN 94 >Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical protein T10B10.1 protein. Length = 428 Score = 29.1 bits (62), Expect = 3.5 Identities = 14/32 (43%), Positives = 17/32 (53%) Frame = +3 Query: 66 RRPGLKGTSTKRPEPEPETQAPSTQKPRPGSR 161 R P GTS +P P T AP T+ P P +R Sbjct: 283 RTPPSSGTSAPQPPPRGSTAAPGTRAP-PATR 313 >U52001-1|AAA96093.1| 656|Caenorhabditis elegans Feminization of xx and xo animalsprotein 1, isoform a protein. Length = 656 Score = 28.7 bits (61), Expect = 4.7 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = +3 Query: 255 ELHRPLLHHHIEEQRPGLHLEQL 323 ELH PLLHH +EE+ P + +L Sbjct: 511 ELHIPLLHHTLEERIPDSNSAEL 533 >J03172-1|AAA28055.1| 656|Caenorhabditis elegans protein ( C.elegans fem-1 gene,complete cds. ). Length = 656 Score = 28.7 bits (61), Expect = 4.7 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = +3 Query: 255 ELHRPLLHHHIEEQRPGLHLEQL 323 ELH PLLHH +EE+ P + +L Sbjct: 511 ELHIPLLHHTLEERIPDSNSAEL 533 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,525,407 Number of Sequences: 27780 Number of extensions: 284498 Number of successful extensions: 1195 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 938 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1151 length of database: 12,740,198 effective HSP length: 80 effective length of database: 10,517,798 effective search space used: 1788025660 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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