Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0556
         (752 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X02007-1|CAA26038.1|   70|Apis mellifera prepromelittin protein.       22   5.4  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   7.1  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   7.1  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   9.4  

>X02007-1|CAA26038.1|   70|Apis mellifera prepromelittin protein.
          Length = 70

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 102 PEPEPETQAPSTQKPRPG 155
           P PEPE +A +   P  G
Sbjct: 27  PAPEPEAEADAEADPEAG 44


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 297 RPGLHLEQLHRLLDRNYQDYLPRPQLLGQVRPGQRPGLV 413
           R G    + HR++  +Y + +P P   G   P  RP +V
Sbjct: 318 RRGRGRSREHRIIPSHYIEQIPAPVYYGNFPP--RPIMV 354


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 99  RPEPEPETQAPSTQKPRP 152
           RP  + E +A  +QKP P
Sbjct: 348 RPSDKEEREAQKSQKPSP 365


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 677 YLPRNLPN*QKTALQN*LNI 736
           Y+P  LPN +K+  +N + I
Sbjct: 153 YIPPELPNDEKSLFENGVEI 172


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,926
Number of Sequences: 438
Number of extensions: 4172
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)