Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0556
         (752 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42520.1 68418.m05176 expressed protein                             29   3.3  
At5g01810.1 68418.m00100 CBL-interacting protein kinase 15 (CIPK...    29   4.4  
At5g39760.1 68418.m04816 zinc finger homeobox protein-related / ...    28   7.7  
At5g15560.1 68418.m01822 hypothetical protein                          28   7.7  

>At5g42520.1 68418.m05176 expressed protein
          Length = 342

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/56 (26%), Positives = 21/56 (37%)
 Frame = +3

Query: 237 IIRGESELHRPLLHHHIEEQRPGLHLEQLHRLLDRNYQDYLPRPQLLGQVRPGQRP 404
           I RG   LH P +HHH ++       E  +   +    D LP     G      +P
Sbjct: 111 ISRGVKHLHHPHMHHHHQQHHIPQLTENAYETREMEPNDGLPTSPPAGSTLESAKP 166


>At5g01810.1 68418.m00100 CBL-interacting protein kinase 15 (CIPK15)
           identical to CBL-interacting protein kinase 15
           [Arabidopsis thaliana] gi|13249134|gb|AAK16692;
           identical to novel serine/threonine protein kinase
           [Arabidopsis thaliana] gi|1777312|dbj|BAA06311; contains
           Pfam profiles PF00069: Protein kinase domain and
           PF03822: NAF domain
          Length = 421

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +3

Query: 27  RQVNTANRRYTNFRRPGLKGTSTKRPEPEPETQAPSTQKPRPGSRFNKG 173
           +++  A  ++ N+  PG K    +  +P P T+  ST+K    S F KG
Sbjct: 222 KKIGKAEVKFPNWLAPGAKRLLKRILDPNPNTRV-STEKIMKSSWFRKG 269


>At5g39760.1 68418.m04816 zinc finger homeobox protein-related /
           ZF-HD homeobox protein-related predicted proteins,
           Arabidopsis thaliana
          Length = 334

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 72  PGLKGTSTKRPE-PEPETQAPSTQKPRPGSRFNKGTTSRN 188
           P +  T+T  P+ PEPE++ P+  +P     F+ G   R+
Sbjct: 6   PTITTTTTPTPKSPEPESETPTRIQPAKPISFSNGIIKRH 45


>At5g15560.1 68418.m01822 hypothetical protein
          Length = 239

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +3

Query: 267 PLLHHHIEEQRPGLHLEQLHRLLDRNYQDYLPRPQLLGQVRPGQRPGLVPA 419
           P+LH+  +E      LE +  + D      L +PQ   Q RP Q+   +PA
Sbjct: 124 PILHNEEDESVTMPSLETIWNVYDNQLFSELSQPQKQPQPRPEQQFYFIPA 174


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,534,016
Number of Sequences: 28952
Number of extensions: 254490
Number of successful extensions: 874
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)