BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0555 (727 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual 69 5e-13 SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c... 30 0.29 SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me... 29 0.51 SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41 |Schizosacch... 29 0.51 SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 27 2.7 SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|... 27 3.6 SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr... 26 4.8 SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch... 26 6.3 SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 25 8.3 >SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual Length = 304 Score = 69.3 bits (162), Expect = 5e-13 Identities = 31/69 (44%), Positives = 49/69 (71%), Gaps = 1/69 (1%) Frame = +3 Query: 312 STINGVKTTIIYPATDKHIAKFSQQEVHIVLETPELYKKLTLPHLEKEQF-NLQWVYNIL 488 ST+ VK+T+I+PA++ H+ K+S Q+ +V ETPE+Y K+T P +E ++ +QWV NIL Sbjct: 88 STLPSVKSTLIWPASETHVRKYSSQKKRMVCETPEMYLKVTKPFIETQRGPQIQWVENIL 147 Query: 489 EGKSEQEEL 515 K+E E + Sbjct: 148 THKAEAERI 156 Score = 65.7 bits (153), Expect = 6e-12 Identities = 30/62 (48%), Positives = 42/62 (67%) Frame = +2 Query: 503 ARRIVHDNKSEKEGFVLLPDLKWDGLTKETLYLLAIVRQRDIKSLRDLDEQHLPLLKRIR 682 A RIV ++ GF+++PDLKWD T L L+AIV DI S+RDL +H+PLL+ IR Sbjct: 153 AERIVVEDPDPLNGFIVIPDLKWDRQTMSALNLMAIVHATDIASIRDLKYKHIPLLENIR 212 Query: 683 DE 688 ++ Sbjct: 213 NK 214 Score = 36.3 bits (80), Expect = 0.004 Identities = 19/45 (42%), Positives = 28/45 (62%) Frame = +1 Query: 91 KDFVLEKILNNNTNRKTACVVGKFKDKSGVALILFEKNAFKENDL 225 K+F EKIL ++T K + GK +++ VAL+L EK AF N + Sbjct: 13 KEFKFEKILKDDTKSKIITLYGKIRNE--VALLLLEKTAFDLNTI 55 >SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr 2|||Manual Length = 618 Score = 30.3 bits (65), Expect = 0.29 Identities = 14/34 (41%), Positives = 21/34 (61%) Frame = +3 Query: 279 DIYGNFECFPPSTINGVKTTIIYPATDKHIAKFS 380 D+Y ++ S INGV ++IYPA + I+K S Sbjct: 34 DVYRSYISSELSKINGVDVSLIYPALETSISKDS 67 >SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner membrane translocase Oxa102|Schizosaccharomyces pombe|chr 2|||Manual Length = 409 Score = 29.5 bits (63), Expect = 0.51 Identities = 15/37 (40%), Positives = 22/37 (59%) Frame = -3 Query: 215 SLKAFFSNRISATPLLSLNFPTTQAVFLLVLLFNIFS 105 S+K FF A+PL ++NFP A+F+ N+FS Sbjct: 268 SMKKFFRFLCLASPLFTMNFP--MAIFMYWFPSNVFS 302 >SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41 |Schizosaccharomyces pombe|chr 1|||Manual Length = 638 Score = 29.5 bits (63), Expect = 0.51 Identities = 18/51 (35%), Positives = 25/51 (49%) Frame = +1 Query: 97 FVLEKILNNNTNRKTACVVGKFKDKSGVALILFEKNAFKENDLSEEGYFSK 249 FVLE+ L N KT G+ K+GV L+ K + N S E ++ K Sbjct: 433 FVLERHLKKNQAIKTGKSCGRINTKNGVELVYPRK--YVSNGFSAEHWYRK 481 >SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9|Schizosaccharomyces pombe|chr 1|||Manual Length = 1223 Score = 27.1 bits (57), Expect = 2.7 Identities = 13/55 (23%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Frame = +3 Query: 306 PPSTINGVKTTIIYPATDKHIAKFSQQEVHIVLETPELYKKLTL-PHLEKEQFNL 467 PPS +N +T + + + + K++++++ + PE + L L P+ E + F + Sbjct: 725 PPSQVNFSETLVNFSQPPRVLLKYNEKKLSLDSSAPENWISLCLQPYGESKDFEV 779 >SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr 2|||Manual Length = 595 Score = 26.6 bits (56), Expect = 3.6 Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%) Frame = -3 Query: 233 SSLRSFSLKA-FFSNRISATPLLSLNFPTTQAVF 135 S L++++++ FFSN S+ L +FPT ++ F Sbjct: 133 SKLQAYTMRTNFFSNGFSSNDLFPHSFPTWKSAF 166 >SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 808 Score = 26.2 bits (55), Expect = 4.8 Identities = 11/31 (35%), Positives = 19/31 (61%) Frame = +3 Query: 405 ETPELYKKLTLPHLEKEQFNLQWVYNILEGK 497 + P Y LTLP+L E+ LQ++ + +G+ Sbjct: 253 DLPPAYSTLTLPNLPSEE-GLQFIQKVFKGE 282 >SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr 3|||Manual Length = 525 Score = 25.8 bits (54), Expect = 6.3 Identities = 8/20 (40%), Positives = 12/20 (60%) Frame = -1 Query: 106 PKQSLSILTDCHLDCCRFHC 47 P LS+L D + CC ++C Sbjct: 139 PNTLLSLLNDEEISCCEYYC 158 >SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr 1|||Manual Length = 1428 Score = 25.4 bits (53), Expect = 8.3 Identities = 13/46 (28%), Positives = 23/46 (50%) Frame = +3 Query: 405 ETPELYKKLTLPHLEKEQFNLQWVYNILEGKSEQEELYMTIKVKRK 542 +TP LT +EK + L W + L+ S E + +++K K + Sbjct: 812 KTPTSPAILTFNAIEKTKVELTWAHFELKVASHVEYMQLSVKAKAR 857 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,093,905 Number of Sequences: 5004 Number of extensions: 67632 Number of successful extensions: 216 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 201 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 215 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 341222980 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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