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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0555
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual    69   5e-13
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c...    30   0.29 
SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me...    29   0.51 
SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41 |Schizosacch...    29   0.51 
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    27   2.7  
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    27   3.6  
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr...    26   4.8  
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch...    26   6.3  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    25   8.3  

>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 304

 Score = 69.3 bits (162), Expect = 5e-13
 Identities = 31/69 (44%), Positives = 49/69 (71%), Gaps = 1/69 (1%)
 Frame = +3

Query: 312 STINGVKTTIIYPATDKHIAKFSQQEVHIVLETPELYKKLTLPHLEKEQF-NLQWVYNIL 488
           ST+  VK+T+I+PA++ H+ K+S Q+  +V ETPE+Y K+T P +E ++   +QWV NIL
Sbjct: 88  STLPSVKSTLIWPASETHVRKYSSQKKRMVCETPEMYLKVTKPFIETQRGPQIQWVENIL 147

Query: 489 EGKSEQEEL 515
             K+E E +
Sbjct: 148 THKAEAERI 156



 Score = 65.7 bits (153), Expect = 6e-12
 Identities = 30/62 (48%), Positives = 42/62 (67%)
 Frame = +2

Query: 503 ARRIVHDNKSEKEGFVLLPDLKWDGLTKETLYLLAIVRQRDIKSLRDLDEQHLPLLKRIR 682
           A RIV ++     GF+++PDLKWD  T   L L+AIV   DI S+RDL  +H+PLL+ IR
Sbjct: 153 AERIVVEDPDPLNGFIVIPDLKWDRQTMSALNLMAIVHATDIASIRDLKYKHIPLLENIR 212

Query: 683 DE 688
           ++
Sbjct: 213 NK 214



 Score = 36.3 bits (80), Expect = 0.004
 Identities = 19/45 (42%), Positives = 28/45 (62%)
 Frame = +1

Query: 91  KDFVLEKILNNNTNRKTACVVGKFKDKSGVALILFEKNAFKENDL 225
           K+F  EKIL ++T  K   + GK +++  VAL+L EK AF  N +
Sbjct: 13  KEFKFEKILKDDTKSKIITLYGKIRNE--VALLLLEKTAFDLNTI 55


>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +3

Query: 279 DIYGNFECFPPSTINGVKTTIIYPATDKHIAKFS 380
           D+Y ++     S INGV  ++IYPA +  I+K S
Sbjct: 34  DVYRSYISSELSKINGVDVSLIYPALETSISKDS 67


>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
           membrane translocase Oxa102|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -3

Query: 215 SLKAFFSNRISATPLLSLNFPTTQAVFLLVLLFNIFS 105
           S+K FF     A+PL ++NFP   A+F+     N+FS
Sbjct: 268 SMKKFFRFLCLASPLFTMNFP--MAIFMYWFPSNVFS 302


>SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +1

Query: 97  FVLEKILNNNTNRKTACVVGKFKDKSGVALILFEKNAFKENDLSEEGYFSK 249
           FVLE+ L  N   KT    G+   K+GV L+   K  +  N  S E ++ K
Sbjct: 433 FVLERHLKKNQAIKTGKSCGRINTKNGVELVYPRK--YVSNGFSAEHWYRK 481


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/55 (23%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +3

Query: 306 PPSTINGVKTTIIYPATDKHIAKFSQQEVHIVLETPELYKKLTL-PHLEKEQFNL 467
           PPS +N  +T + +    + + K++++++ +    PE +  L L P+ E + F +
Sbjct: 725 PPSQVNFSETLVNFSQPPRVLLKYNEKKLSLDSSAPENWISLCLQPYGESKDFEV 779


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -3

Query: 233 SSLRSFSLKA-FFSNRISATPLLSLNFPTTQAVF 135
           S L++++++  FFSN  S+  L   +FPT ++ F
Sbjct: 133 SKLQAYTMRTNFFSNGFSSNDLFPHSFPTWKSAF 166


>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 808

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 405 ETPELYKKLTLPHLEKEQFNLQWVYNILEGK 497
           + P  Y  LTLP+L  E+  LQ++  + +G+
Sbjct: 253 DLPPAYSTLTLPNLPSEE-GLQFIQKVFKGE 282


>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 106 PKQSLSILTDCHLDCCRFHC 47
           P   LS+L D  + CC ++C
Sbjct: 139 PNTLLSLLNDEEISCCEYYC 158


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +3

Query: 405 ETPELYKKLTLPHLEKEQFNLQWVYNILEGKSEQEELYMTIKVKRK 542
           +TP     LT   +EK +  L W +  L+  S  E + +++K K +
Sbjct: 812 KTPTSPAILTFNAIEKTKVELTWAHFELKVASHVEYMQLSVKAKAR 857


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,093,905
Number of Sequences: 5004
Number of extensions: 67632
Number of successful extensions: 216
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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