Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0555
(727 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual 69 5e-13
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c... 30 0.29
SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me... 29 0.51
SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41 |Schizosacch... 29 0.51
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 27 2.7
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|... 27 3.6
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr... 26 4.8
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch... 26 6.3
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 25 8.3
>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 304
Score = 69.3 bits (162), Expect = 5e-13
Identities = 31/69 (44%), Positives = 49/69 (71%), Gaps = 1/69 (1%)
Frame = +3
Query: 312 STINGVKTTIIYPATDKHIAKFSQQEVHIVLETPELYKKLTLPHLEKEQF-NLQWVYNIL 488
ST+ VK+T+I+PA++ H+ K+S Q+ +V ETPE+Y K+T P +E ++ +QWV NIL
Sbjct: 88 STLPSVKSTLIWPASETHVRKYSSQKKRMVCETPEMYLKVTKPFIETQRGPQIQWVENIL 147
Query: 489 EGKSEQEEL 515
K+E E +
Sbjct: 148 THKAEAERI 156
Score = 65.7 bits (153), Expect = 6e-12
Identities = 30/62 (48%), Positives = 42/62 (67%)
Frame = +2
Query: 503 ARRIVHDNKSEKEGFVLLPDLKWDGLTKETLYLLAIVRQRDIKSLRDLDEQHLPLLKRIR 682
A RIV ++ GF+++PDLKWD T L L+AIV DI S+RDL +H+PLL+ IR
Sbjct: 153 AERIVVEDPDPLNGFIVIPDLKWDRQTMSALNLMAIVHATDIASIRDLKYKHIPLLENIR 212
Query: 683 DE 688
++
Sbjct: 213 NK 214
Score = 36.3 bits (80), Expect = 0.004
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = +1
Query: 91 KDFVLEKILNNNTNRKTACVVGKFKDKSGVALILFEKNAFKENDL 225
K+F EKIL ++T K + GK +++ VAL+L EK AF N +
Sbjct: 13 KEFKFEKILKDDTKSKIITLYGKIRNE--VALLLLEKTAFDLNTI 55
>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 30.3 bits (65), Expect = 0.29
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +3
Query: 279 DIYGNFECFPPSTINGVKTTIIYPATDKHIAKFS 380
D+Y ++ S INGV ++IYPA + I+K S
Sbjct: 34 DVYRSYISSELSKINGVDVSLIYPALETSISKDS 67
>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
membrane translocase Oxa102|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 409
Score = 29.5 bits (63), Expect = 0.51
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = -3
Query: 215 SLKAFFSNRISATPLLSLNFPTTQAVFLLVLLFNIFS 105
S+K FF A+PL ++NFP A+F+ N+FS
Sbjct: 268 SMKKFFRFLCLASPLFTMNFP--MAIFMYWFPSNVFS 302
>SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 29.5 bits (63), Expect = 0.51
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +1
Query: 97 FVLEKILNNNTNRKTACVVGKFKDKSGVALILFEKNAFKENDLSEEGYFSK 249
FVLE+ L N KT G+ K+GV L+ K + N S E ++ K
Sbjct: 433 FVLERHLKKNQAIKTGKSCGRINTKNGVELVYPRK--YVSNGFSAEHWYRK 481
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/55 (23%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +3
Query: 306 PPSTINGVKTTIIYPATDKHIAKFSQQEVHIVLETPELYKKLTL-PHLEKEQFNL 467
PPS +N +T + + + + K++++++ + PE + L L P+ E + F +
Sbjct: 725 PPSQVNFSETLVNFSQPPRVLLKYNEKKLSLDSSAPENWISLCLQPYGESKDFEV 779
>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 595
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -3
Query: 233 SSLRSFSLKA-FFSNRISATPLLSLNFPTTQAVF 135
S L++++++ FFSN S+ L +FPT ++ F
Sbjct: 133 SKLQAYTMRTNFFSNGFSSNDLFPHSFPTWKSAF 166
>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 808
Score = 26.2 bits (55), Expect = 4.8
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 405 ETPELYKKLTLPHLEKEQFNLQWVYNILEGK 497
+ P Y LTLP+L E+ LQ++ + +G+
Sbjct: 253 DLPPAYSTLTLPNLPSEE-GLQFIQKVFKGE 282
>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 525
Score = 25.8 bits (54), Expect = 6.3
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -1
Query: 106 PKQSLSILTDCHLDCCRFHC 47
P LS+L D + CC ++C
Sbjct: 139 PNTLLSLLNDEEISCCEYYC 158
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +3
Query: 405 ETPELYKKLTLPHLEKEQFNLQWVYNILEGKSEQEELYMTIKVKRK 542
+TP LT +EK + L W + L+ S E + +++K K +
Sbjct: 812 KTPTSPAILTFNAIEKTKVELTWAHFELKVASHVEYMQLSVKAKAR 857
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,093,905
Number of Sequences: 5004
Number of extensions: 67632
Number of successful extensions: 216
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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