BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0555 (727 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_7588| Best HMM Match : DcpS (HMM E-Value=0) 79 4e-15 SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23) 31 0.95 SB_7377| Best HMM Match : ELO (HMM E-Value=3.6e-06) 29 2.9 SB_13432| Best HMM Match : Reticulon (HMM E-Value=5.1e-16) 29 3.8 SB_57163| Best HMM Match : 3HCDH_N (HMM E-Value=2.4) 28 8.9 SB_44254| Best HMM Match : Rho_N (HMM E-Value=5.7) 28 8.9 SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9 >SB_7588| Best HMM Match : DcpS (HMM E-Value=0) Length = 446 Score = 79.0 bits (186), Expect = 4e-15 Identities = 36/68 (52%), Positives = 49/68 (72%) Frame = +2 Query: 509 RIVHDNKSEKEGFVLLPDLKWDGLTKETLYLLAIVRQRDIKSLRDLDEQHLPLLKRIRDE 688 R+V ++ + GFVLLPD+KWD E LYL+AI +R IKSLRDL+E+H+PLLK I ++ Sbjct: 296 RVVFEDGDPETGFVLLPDMKWDQQQVENLYLIAICHKRGIKSLRDLNEEHIPLLKNILNK 355 Query: 689 GKKTILEK 712 G+ I K Sbjct: 356 GRDAIRTK 363 Score = 49.6 bits (113), Expect(2) = 7e-09 Identities = 24/51 (47%), Positives = 33/51 (64%) Frame = +3 Query: 255 QLKTFFENDIYGNFECFPPSTINGVKTTIIYPATDKHIAKFSQQEVHIVLE 407 +L ND+YG + +P T N +KTT+IYPAT +HIA S Q V+ +LE Sbjct: 241 KLSVDMRNDVYGQYIGYPAPTANTIKTTVIYPATAQHIA--STQWVYNILE 289 Score = 28.3 bits (60), Expect(2) = 7e-09 Identities = 11/16 (68%), Positives = 13/16 (81%) Frame = +3 Query: 468 QWVYNILEGKSEQEEL 515 QWVYNILE K+E E + Sbjct: 282 QWVYNILEKKAETERV 297 >SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23) Length = 1189 Score = 31.1 bits (67), Expect = 0.95 Identities = 16/35 (45%), Positives = 19/35 (54%) Frame = -1 Query: 154 QPHKLFSC*CYCSIFSPKQSLSILTDCHLDCCRFH 50 QPH C CS +P +L T CH+DCC FH Sbjct: 833 QPHTAAVCPQPCS--AP--TLCYHTGCHVDCCAFH 863 >SB_7377| Best HMM Match : ELO (HMM E-Value=3.6e-06) Length = 255 Score = 29.5 bits (63), Expect = 2.9 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%) Frame = +3 Query: 429 LTLPHL--EKEQFNLQWVYNILEGKSEQEELYMTIKV 533 LT PHL K+ FNLQW+ I G LY+ +++ Sbjct: 50 LTGPHLMKNKKAFNLQWIMVIYNGMMSLLNLYIFLEM 86 >SB_13432| Best HMM Match : Reticulon (HMM E-Value=5.1e-16) Length = 621 Score = 29.1 bits (62), Expect = 3.8 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Frame = -2 Query: 717 DIFSKMVFFPSSLILFNNGKCCSSKSLRLFMSLC-LTIANKYNVSLVRPSHFRSGRSTNP 541 +I + F + L++ + CCS S+ F S+ LT+A Y V + + + NP Sbjct: 381 EIKKTAIVFSTLLVVLISLSCCSLLSVITFFSMAVLTVALLYRVGMTVMGAIQKSGTENP 440 Query: 540 SFSLL 526 +LL Sbjct: 441 FKTLL 445 >SB_57163| Best HMM Match : 3HCDH_N (HMM E-Value=2.4) Length = 303 Score = 27.9 bits (59), Expect = 8.9 Identities = 14/45 (31%), Positives = 24/45 (53%) Frame = +2 Query: 572 DGLTKETLYLLAIVRQRDIKSLRDLDEQHLPLLKRIRDEGKKTIL 706 DG + + L + +RD LR L E + +R+R G+KT++ Sbjct: 137 DGRISDEEFRLILRGKRDTTRLRPLSELYTASHRRLRIYGRKTVI 181 >SB_44254| Best HMM Match : Rho_N (HMM E-Value=5.7) Length = 209 Score = 27.9 bits (59), Expect = 8.9 Identities = 15/41 (36%), Positives = 21/41 (51%) Frame = +1 Query: 124 NTNRKTACVVGKFKDKSGVALILFEKNAFKENDLSEEGYFS 246 N R C V + ++ LIL NAF +ND +EG+ S Sbjct: 43 NKGRMQVCTVLRSTERHCKKLILAHGNAFSKND-DDEGFIS 82 >SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 3176 Score = 27.9 bits (59), Expect = 8.9 Identities = 14/36 (38%), Positives = 21/36 (58%) Frame = -2 Query: 630 FMSLCLTIANKYNVSLVRPSHFRSGRSTNPSFSLLL 523 F +L L+I + + + P HF GR+ +PS S LL Sbjct: 3114 FSALSLSIGSASSSARSSPVHFNLGRAQSPSSSSLL 3149 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 22,207,423 Number of Sequences: 59808 Number of extensions: 471431 Number of successful extensions: 1057 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 986 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1057 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1937927537 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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