Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0555
         (727 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7588| Best HMM Match : DcpS (HMM E-Value=0)                         79   4e-15
SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23)                   31   0.95 
SB_7377| Best HMM Match : ELO (HMM E-Value=3.6e-06)                    29   2.9  
SB_13432| Best HMM Match : Reticulon (HMM E-Value=5.1e-16)             29   3.8  
SB_57163| Best HMM Match : 3HCDH_N (HMM E-Value=2.4)                   28   8.9  
SB_44254| Best HMM Match : Rho_N (HMM E-Value=5.7)                     28   8.9  
SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_7588| Best HMM Match : DcpS (HMM E-Value=0)
          Length = 446

 Score = 79.0 bits (186), Expect = 4e-15
 Identities = 36/68 (52%), Positives = 49/68 (72%)
 Frame = +2

Query: 509 RIVHDNKSEKEGFVLLPDLKWDGLTKETLYLLAIVRQRDIKSLRDLDEQHLPLLKRIRDE 688
           R+V ++   + GFVLLPD+KWD    E LYL+AI  +R IKSLRDL+E+H+PLLK I ++
Sbjct: 296 RVVFEDGDPETGFVLLPDMKWDQQQVENLYLIAICHKRGIKSLRDLNEEHIPLLKNILNK 355

Query: 689 GKKTILEK 712
           G+  I  K
Sbjct: 356 GRDAIRTK 363



 Score = 49.6 bits (113), Expect(2) = 7e-09
 Identities = 24/51 (47%), Positives = 33/51 (64%)
 Frame = +3

Query: 255 QLKTFFENDIYGNFECFPPSTINGVKTTIIYPATDKHIAKFSQQEVHIVLE 407
           +L     ND+YG +  +P  T N +KTT+IYPAT +HIA  S Q V+ +LE
Sbjct: 241 KLSVDMRNDVYGQYIGYPAPTANTIKTTVIYPATAQHIA--STQWVYNILE 289



 Score = 28.3 bits (60), Expect(2) = 7e-09
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 468 QWVYNILEGKSEQEEL 515
           QWVYNILE K+E E +
Sbjct: 282 QWVYNILEKKAETERV 297


>SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23)
          Length = 1189

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -1

Query: 154 QPHKLFSC*CYCSIFSPKQSLSILTDCHLDCCRFH 50
           QPH    C   CS  +P  +L   T CH+DCC FH
Sbjct: 833 QPHTAAVCPQPCS--AP--TLCYHTGCHVDCCAFH 863


>SB_7377| Best HMM Match : ELO (HMM E-Value=3.6e-06)
          Length = 255

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +3

Query: 429 LTLPHL--EKEQFNLQWVYNILEGKSEQEELYMTIKV 533
           LT PHL   K+ FNLQW+  I  G      LY+ +++
Sbjct: 50  LTGPHLMKNKKAFNLQWIMVIYNGMMSLLNLYIFLEM 86


>SB_13432| Best HMM Match : Reticulon (HMM E-Value=5.1e-16)
          Length = 621

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = -2

Query: 717 DIFSKMVFFPSSLILFNNGKCCSSKSLRLFMSLC-LTIANKYNVSLVRPSHFRSGRSTNP 541
           +I    + F + L++  +  CCS  S+  F S+  LT+A  Y V +      +   + NP
Sbjct: 381 EIKKTAIVFSTLLVVLISLSCCSLLSVITFFSMAVLTVALLYRVGMTVMGAIQKSGTENP 440

Query: 540 SFSLL 526
             +LL
Sbjct: 441 FKTLL 445


>SB_57163| Best HMM Match : 3HCDH_N (HMM E-Value=2.4)
          Length = 303

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 572 DGLTKETLYLLAIVRQRDIKSLRDLDEQHLPLLKRIRDEGKKTIL 706
           DG   +  + L +  +RD   LR L E +    +R+R  G+KT++
Sbjct: 137 DGRISDEEFRLILRGKRDTTRLRPLSELYTASHRRLRIYGRKTVI 181


>SB_44254| Best HMM Match : Rho_N (HMM E-Value=5.7)
          Length = 209

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 124 NTNRKTACVVGKFKDKSGVALILFEKNAFKENDLSEEGYFS 246
           N  R   C V +  ++    LIL   NAF +ND  +EG+ S
Sbjct: 43  NKGRMQVCTVLRSTERHCKKLILAHGNAFSKND-DDEGFIS 82


>SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3176

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -2

Query: 630  FMSLCLTIANKYNVSLVRPSHFRSGRSTNPSFSLLL 523
            F +L L+I +  + +   P HF  GR+ +PS S LL
Sbjct: 3114 FSALSLSIGSASSSARSSPVHFNLGRAQSPSSSSLL 3149


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,207,423
Number of Sequences: 59808
Number of extensions: 471431
Number of successful extensions: 1057
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)