BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0555 (727 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.1 DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 5.1 DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 5.1 AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein. 21 9.0 AY661557-1|AAT74557.1| 411|Apis mellifera yellow-f-like protein... 21 9.0 >EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine receptor subunitalpha 6 transcript variant 1 protein. Length = 461 Score = 22.2 bits (45), Expect = 5.1 Identities = 7/26 (26%), Positives = 16/26 (61%) Frame = -1 Query: 526 IVMYNSSCSLLPSRMLYTHCKLNCSF 449 +V +N SC +P + + CK++ ++ Sbjct: 92 VVTHNGSCLYVPPGIFKSTCKIDITW 117 >DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine receptor alpha6subunit protein. Length = 529 Score = 22.2 bits (45), Expect = 5.1 Identities = 7/26 (26%), Positives = 16/26 (61%) Frame = -1 Query: 526 IVMYNSSCSLLPSRMLYTHCKLNCSF 449 +V +N SC +P + + CK++ ++ Sbjct: 160 VVTHNGSCLYVPPGIFKSTCKIDITW 185 >DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine receptor alpha6subunit protein. Length = 529 Score = 22.2 bits (45), Expect = 5.1 Identities = 7/26 (26%), Positives = 16/26 (61%) Frame = -1 Query: 526 IVMYNSSCSLLPSRMLYTHCKLNCSF 449 +V +N SC +P + + CK++ ++ Sbjct: 160 VVTHNGSCLYVPPGIFKSTCKIDITW 185 >AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein. Length = 996 Score = 21.4 bits (43), Expect = 9.0 Identities = 7/13 (53%), Positives = 10/13 (76%) Frame = +1 Query: 139 TACVVGKFKDKSG 177 T C +GKFK ++G Sbjct: 263 TECPIGKFKHEAG 275 >AY661557-1|AAT74557.1| 411|Apis mellifera yellow-f-like protein protein. Length = 411 Score = 21.4 bits (43), Expect = 9.0 Identities = 7/22 (31%), Positives = 12/22 (54%) Frame = -3 Query: 413 WSFQHNMNFLLAKFGNMLISGW 348 W HN + ++GN I+G+ Sbjct: 210 WRITHNFFYFDPRYGNYNINGF 231 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 209,243 Number of Sequences: 438 Number of extensions: 4586 Number of successful extensions: 7 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7 length of database: 146,343 effective HSP length: 56 effective length of database: 121,815 effective search space used: 22535775 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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