Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0555
         (727 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.1  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   5.1  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   5.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   9.0  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   9.0  

>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = -1

Query: 526 IVMYNSSCSLLPSRMLYTHCKLNCSF 449
           +V +N SC  +P  +  + CK++ ++
Sbjct: 92  VVTHNGSCLYVPPGIFKSTCKIDITW 117


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = -1

Query: 526 IVMYNSSCSLLPSRMLYTHCKLNCSF 449
           +V +N SC  +P  +  + CK++ ++
Sbjct: 160 VVTHNGSCLYVPPGIFKSTCKIDITW 185


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = -1

Query: 526 IVMYNSSCSLLPSRMLYTHCKLNCSF 449
           +V +N SC  +P  +  + CK++ ++
Sbjct: 160 VVTHNGSCLYVPPGIFKSTCKIDITW 185


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 139 TACVVGKFKDKSG 177
           T C +GKFK ++G
Sbjct: 263 TECPIGKFKHEAG 275


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = -3

Query: 413 WSFQHNMNFLLAKFGNMLISGW 348
           W   HN  +   ++GN  I+G+
Sbjct: 210 WRITHNFFYFDPRYGNYNINGF 231


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,243
Number of Sequences: 438
Number of extensions: 4586
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)