Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0555
         (727 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g06570.2 68418.m00742 expressed protein similar to PrMC3 [Pin...    29   2.4  
At5g06570.1 68418.m00741 expressed protein similar to PrMC3 [Pin...    29   2.4  
At4g39950.1 68417.m05657 cytochrome P450 79B2, putative (CYP79B2...    29   2.4  
At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)...    28   5.5  
At3g47820.1 68416.m05211 armadillo/beta-catenin repeat family pr...    28   5.5  
At4g32320.1 68417.m04597 peroxidase family protein similar to L-...    28   7.2  
At3g13760.1 68416.m01736 DC1 domain-containing protein contains ...    28   7.2  
At2g20190.1 68415.m02361 CLIP-associating protein (CLASP) -relat...    28   7.2  

>At5g06570.2 68418.m00742 expressed protein similar to PrMC3 [Pinus
           radiata] GI:5487873
          Length = 329

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -2

Query: 708 SKMVFFPSSLILFNNGKCCSSKSLRLFMSLCLTIANKYNVSLVRPSH 568
           S     P  +     G C  S+S   F + CLT+A+  N  +V P +
Sbjct: 71  SNRTALPVVVFFHGGGFCFGSRSWPHFHNFCLTLASSLNALVVSPDY 117


>At5g06570.1 68418.m00741 expressed protein similar to PrMC3 [Pinus
           radiata] GI:5487873
          Length = 329

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -2

Query: 708 SKMVFFPSSLILFNNGKCCSSKSLRLFMSLCLTIANKYNVSLVRPSH 568
           S     P  +     G C  S+S   F + CLT+A+  N  +V P +
Sbjct: 71  SNRTALPVVVFFHGGGFCFGSRSWPHFHNFCLTLASSLNALVVSPDY 117


>At4g39950.1 68417.m05657 cytochrome P450 79B2, putative (CYP79B2)
           identical to cytochrome P450 (79B2) SP:O81346 from
           [Arabidopsis thaliana]
          Length = 541

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/68 (27%), Positives = 31/68 (45%)
 Frame = +3

Query: 321 NGVKTTIIYPATDKHIAKFSQQEVHIVLETPELYKKLTLPHLEKEQFNLQWVYNILEGKS 500
           NG KT +I P  D+   K  ++ V   L  P  ++ L     E+      WVYN+++   
Sbjct: 137 NGYKTCVITPFGDQF--KKMRKVVMTELVCPARHRWLHQKRSEENDHLTAWVYNMVKNSG 194

Query: 501 EQEELYMT 524
             +  +MT
Sbjct: 195 SVDFRFMT 202


>At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)
           identical to SP|O65607 DNA mismatch repair protein MSH3
           (AtMsh3) {Arabidopsis thaliana}
          Length = 1081

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = -3

Query: 410 SFQHNMNFLLAKFGNMLISGWVDY--CSFHTVYSRRRETLEVSVNIVLEKRFQLVS 249
           S  HNMN  L  +G+ L+  WV +  C  + + +R     E+S  +      QL S
Sbjct: 444 SLFHNMNHTLTVYGSRLLRHWVTHPLCDRNLISARLDAVSEISACMGSHSSSQLSS 499


>At3g47820.1 68416.m05211 armadillo/beta-catenin repeat family
           protein / U-box domain-containing protein contains Pfam
           domain, PF00514: Armadillo/beta-catenin-like repeats and
           Pfam, PF04564: U-box domain
          Length = 509

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +1

Query: 331 KLQ*STQP-LISILPNLASKKFILCW 405
           KL   TQP L +++PNLA K  IL W
Sbjct: 51  KLHDGTQPDLSTVIPNLAMKSTILSW 76


>At4g32320.1 68417.m04597 peroxidase family protein similar to
           L-ascorbate peroxidase [Arabidopsis thaliana]
           gi|1523789|emb|CAA66925; contains Pfam profile PF00141:
           Peroxidase
          Length = 329

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +3

Query: 258 LKTF-FENDIYGNFECFPPSTINGVKTTIIYPATDKHIAKFSQ 383
           +KTF F  D + +F+ F     +  KT ++ PAT+KH+ + S+
Sbjct: 9   VKTFLFRCDSFSSFK-FKCKFESPAKTRLLSPATEKHVVRSSR 50


>At3g13760.1 68416.m01736 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 652

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = -1

Query: 595 QCLFGKTVPLQIGEEHKSFLFTFIVMYNSSCSLLPSRMLYTHC 467
           +CLFG TV +Q G        T  V  NS  S L  R  +  C
Sbjct: 569 ECLFGSTVYMQPGSRFNYVYGTVEVFRNSHNSRLVCRKCFHSC 611


>At2g20190.1 68415.m02361 CLIP-associating protein (CLASP) -related
            similar to CLIP-associating protein CLASP2 (GI:13508651)
            [Rattus norvegicus]
          Length = 1439

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +3

Query: 405  ETPELYKKLTLPHLEKEQFNLQWVYNILEGKSEQE 509
            E  E+   L+ PHLEK   NL  V + LEG+ E E
Sbjct: 1148 ENIEILDDLSPPHLEKNGLNLTSV-DSLEGRHENE 1181


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,769,325
Number of Sequences: 28952
Number of extensions: 338744
Number of successful extensions: 851
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)