BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0554 (769 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 118 1e-27 SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 117 2e-27 SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c... 26 5.2 SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos... 26 6.8 SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom... 26 6.8 SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc... 25 9.0 >SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizosaccharomyces pombe|chr 2|||Manual Length = 363 Score = 118 bits (283), Expect = 1e-27 Identities = 50/83 (60%), Positives = 69/83 (83%) Frame = +3 Query: 510 LPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLI 689 +PLVV D VQ KTK+AV L+ +KA+ D++KV S++LRAGKGK+RNRR +QR+GPL+ Sbjct: 150 VPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLRNRRHVQRRGPLV 209 Query: 690 IFNKDQGLTRAFRNIPGVELLNV 758 +FN+D G+ +AFRNIPGVE++NV Sbjct: 210 VFNEDTGIVKAFRNIPGVEIVNV 232 Score = 109 bits (263), Expect = 3e-25 Identities = 51/87 (58%), Positives = 54/87 (62%) Frame = +1 Query: 256 ESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXX 435 ESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH Sbjct: 65 ESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAI 124 Query: 436 XXXXXXXXXXXXXQARGHIIEKIPGFP 516 ARGH IE+IP P Sbjct: 125 ASAVAASGVPSLLLARGHRIEEIPEVP 151 Score = 84.2 bits (199), Expect = 2e-17 Identities = 39/65 (60%), Positives = 49/65 (75%) Frame = +2 Query: 62 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 241 ++ ARP VS+Y+ K +V LPFVFKAPIRPDLV VH +++KN RQPY VS++AG Sbjct: 1 MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59 Query: 242 HQTSA 256 HQTSA Sbjct: 60 HQTSA 64 >SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizosaccharomyces pombe|chr 2|||Manual Length = 363 Score = 117 bits (282), Expect = 2e-27 Identities = 50/83 (60%), Positives = 69/83 (83%) Frame = +3 Query: 510 LPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLI 689 +PLVV D VQ KTK+AV L+ +KA+ D++KV S++LRAGKGK+RNRR +QR+GPL+ Sbjct: 150 VPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLRNRRHVQRRGPLV 209 Query: 690 IFNKDQGLTRAFRNIPGVELLNV 758 +FN+D G+ +AFRNIPGVE++NV Sbjct: 210 VFNEDAGIVKAFRNIPGVEIVNV 232 Score = 109 bits (263), Expect = 3e-25 Identities = 51/87 (58%), Positives = 54/87 (62%) Frame = +1 Query: 256 ESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXX 435 ESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH Sbjct: 65 ESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAI 124 Query: 436 XXXXXXXXXXXXXQARGHIIEKIPGFP 516 ARGH IE+IP P Sbjct: 125 SSAVAASGVPSLLLARGHRIEEIPEVP 151 Score = 85.0 bits (201), Expect = 1e-17 Identities = 40/65 (61%), Positives = 49/65 (75%) Frame = +2 Query: 62 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 241 ++ ARP VS+YS K +V LPFVFKAPIRPDLV VH +++KN RQPY VS++AG Sbjct: 1 MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59 Query: 242 HQTSA 256 HQTSA Sbjct: 60 HQTSA 64 >SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr 2|||Manual Length = 606 Score = 26.2 bits (55), Expect = 5.2 Identities = 10/26 (38%), Positives = 17/26 (65%) Frame = -2 Query: 123 APCTVSLFSEYTDTKGRATDRLISLL 46 A C V ++SEYT G ++ L++L+ Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515 >SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizosaccharomyces pombe|chr 1|||Manual Length = 532 Score = 25.8 bits (54), Expect = 6.8 Identities = 13/37 (35%), Positives = 19/37 (51%) Frame = +1 Query: 61 SIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGP 171 SI SP+ SVG + D + S + P+ I G + P Sbjct: 312 SITSPSSSVGQIPQPTDHSALSPSKPMSISGTESPNP 348 >SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pombe|chr 1|||Manual Length = 355 Score = 25.8 bits (54), Expect = 6.8 Identities = 13/32 (40%), Positives = 16/32 (50%) Frame = +1 Query: 136 PVRIQGAHTSGPGQ*CSRFYVQELEAALLREQ 231 PV +QG HT G +F Q L A +L Q Sbjct: 29 PVDVQGCHTLGERNDPKKFRFQTLVALMLSSQ 60 >SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosaccharomyces pombe|chr 2|||Manual Length = 452 Score = 25.4 bits (53), Expect = 9.0 Identities = 11/27 (40%), Positives = 20/27 (74%) Frame = +3 Query: 684 LIIFNKDQGLTRAFRNIPGVELLNVNS 764 +++F+K +G+T FRN P +E + V+S Sbjct: 134 VLVFSKQKGITVVFRNDP-LESVRVSS 159 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,009,464 Number of Sequences: 5004 Number of extensions: 59426 Number of successful extensions: 170 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 154 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 166 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 369323696 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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