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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0554
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   118   1e-27
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   117   2e-27
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    26   5.2  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    26   6.8  
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    26   6.8  
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc...    25   9.0  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  118 bits (283), Expect = 1e-27
 Identities = 50/83 (60%), Positives = 69/83 (83%)
 Frame = +3

Query: 510 LPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLI 689
           +PLVV D VQ   KTK+AV  L+ +KA+ D++KV  S++LRAGKGK+RNRR +QR+GPL+
Sbjct: 150 VPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLRNRRHVQRRGPLV 209

Query: 690 IFNKDQGLTRAFRNIPGVELLNV 758
           +FN+D G+ +AFRNIPGVE++NV
Sbjct: 210 VFNEDTGIVKAFRNIPGVEIVNV 232



 Score =  109 bits (263), Expect = 3e-25
 Identities = 51/87 (58%), Positives = 54/87 (62%)
 Frame = +1

Query: 256 ESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXX 435
           ESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH            
Sbjct: 65  ESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAI 124

Query: 436 XXXXXXXXXXXXXQARGHIIEKIPGFP 516
                         ARGH IE+IP  P
Sbjct: 125 ASAVAASGVPSLLLARGHRIEEIPEVP 151



 Score = 84.2 bits (199), Expect = 2e-17
 Identities = 39/65 (60%), Positives = 49/65 (75%)
 Frame = +2

Query: 62  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 241
           ++ ARP VS+Y+ K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 242 HQTSA 256
           HQTSA
Sbjct: 60  HQTSA 64


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  117 bits (282), Expect = 2e-27
 Identities = 50/83 (60%), Positives = 69/83 (83%)
 Frame = +3

Query: 510 LPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLI 689
           +PLVV D VQ   KTK+AV  L+ +KA+ D++KV  S++LRAGKGK+RNRR +QR+GPL+
Sbjct: 150 VPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLRNRRHVQRRGPLV 209

Query: 690 IFNKDQGLTRAFRNIPGVELLNV 758
           +FN+D G+ +AFRNIPGVE++NV
Sbjct: 210 VFNEDAGIVKAFRNIPGVEIVNV 232



 Score =  109 bits (263), Expect = 3e-25
 Identities = 51/87 (58%), Positives = 54/87 (62%)
 Frame = +1

Query: 256 ESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXX 435
           ESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH            
Sbjct: 65  ESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAI 124

Query: 436 XXXXXXXXXXXXXQARGHIIEKIPGFP 516
                         ARGH IE+IP  P
Sbjct: 125 SSAVAASGVPSLLLARGHRIEEIPEVP 151



 Score = 85.0 bits (201), Expect = 1e-17
 Identities = 40/65 (61%), Positives = 49/65 (75%)
 Frame = +2

Query: 62  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 241
           ++ ARP VS+YS K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 242 HQTSA 256
           HQTSA
Sbjct: 60  HQTSA 64


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 123 APCTVSLFSEYTDTKGRATDRLISLL 46
           A C V ++SEYT   G ++  L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 61  SIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGP 171
           SI SP+ SVG   +  D +  S + P+ I G  +  P
Sbjct: 312 SITSPSSSVGQIPQPTDHSALSPSKPMSISGTESPNP 348


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 136 PVRIQGAHTSGPGQ*CSRFYVQELEAALLREQ 231
           PV +QG HT G      +F  Q L A +L  Q
Sbjct: 29  PVDVQGCHTLGERNDPKKFRFQTLVALMLSSQ 60


>SPBC19C2.11c |||mitochondrial outer membrane protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = +3

Query: 684 LIIFNKDQGLTRAFRNIPGVELLNVNS 764
           +++F+K +G+T  FRN P +E + V+S
Sbjct: 134 VLVFSKQKGITVVFRNDP-LESVRVSS 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,009,464
Number of Sequences: 5004
Number of extensions: 59426
Number of successful extensions: 170
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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