Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0554
(769 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 118 1e-27
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 117 2e-27
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c... 26 5.2
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos... 26 6.8
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom... 26 6.8
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc... 25 9.0
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 118 bits (283), Expect = 1e-27
Identities = 50/83 (60%), Positives = 69/83 (83%)
Frame = +3
Query: 510 LPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLI 689
+PLVV D VQ KTK+AV L+ +KA+ D++KV S++LRAGKGK+RNRR +QR+GPL+
Sbjct: 150 VPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLRNRRHVQRRGPLV 209
Query: 690 IFNKDQGLTRAFRNIPGVELLNV 758
+FN+D G+ +AFRNIPGVE++NV
Sbjct: 210 VFNEDTGIVKAFRNIPGVEIVNV 232
Score = 109 bits (263), Expect = 3e-25
Identities = 51/87 (58%), Positives = 54/87 (62%)
Frame = +1
Query: 256 ESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXX 435
ESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH
Sbjct: 65 ESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAI 124
Query: 436 XXXXXXXXXXXXXQARGHIIEKIPGFP 516
ARGH IE+IP P
Sbjct: 125 ASAVAASGVPSLLLARGHRIEEIPEVP 151
Score = 84.2 bits (199), Expect = 2e-17
Identities = 39/65 (60%), Positives = 49/65 (75%)
Frame = +2
Query: 62 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 241
++ ARP VS+Y+ K +V LPFVFKAPIRPDLV VH +++KN RQPY VS++AG
Sbjct: 1 MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59
Query: 242 HQTSA 256
HQTSA
Sbjct: 60 HQTSA 64
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 117 bits (282), Expect = 2e-27
Identities = 50/83 (60%), Positives = 69/83 (83%)
Frame = +3
Query: 510 LPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLI 689
+PLVV D VQ KTK+AV L+ +KA+ D++KV S++LRAGKGK+RNRR +QR+GPL+
Sbjct: 150 VPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLRNRRHVQRRGPLV 209
Query: 690 IFNKDQGLTRAFRNIPGVELLNV 758
+FN+D G+ +AFRNIPGVE++NV
Sbjct: 210 VFNEDAGIVKAFRNIPGVEIVNV 232
Score = 109 bits (263), Expect = 3e-25
Identities = 51/87 (58%), Positives = 54/87 (62%)
Frame = +1
Query: 256 ESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXX 435
ESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH
Sbjct: 65 ESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAI 124
Query: 436 XXXXXXXXXXXXXQARGHIIEKIPGFP 516
ARGH IE+IP P
Sbjct: 125 SSAVAASGVPSLLLARGHRIEEIPEVP 151
Score = 85.0 bits (201), Expect = 1e-17
Identities = 40/65 (61%), Positives = 49/65 (75%)
Frame = +2
Query: 62 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 241
++ ARP VS+YS K +V LPFVFKAPIRPDLV VH +++KN RQPY VS++AG
Sbjct: 1 MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59
Query: 242 HQTSA 256
HQTSA
Sbjct: 60 HQTSA 64
>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 606
Score = 26.2 bits (55), Expect = 5.2
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -2
Query: 123 APCTVSLFSEYTDTKGRATDRLISLL 46
A C V ++SEYT G ++ L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515
>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 532
Score = 25.8 bits (54), Expect = 6.8
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 61 SIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGP 171
SI SP+ SVG + D + S + P+ I G + P
Sbjct: 312 SITSPSSSVGQIPQPTDHSALSPSKPMSISGTESPNP 348
>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 355
Score = 25.8 bits (54), Expect = 6.8
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 136 PVRIQGAHTSGPGQ*CSRFYVQELEAALLREQ 231
PV +QG HT G +F Q L A +L Q
Sbjct: 29 PVDVQGCHTLGERNDPKKFRFQTLVALMLSSQ 60
>SPBC19C2.11c |||mitochondrial outer membrane protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 9.0
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +3
Query: 684 LIIFNKDQGLTRAFRNIPGVELLNVNS 764
+++F+K +G+T FRN P +E + V+S
Sbjct: 134 VLVFSKQKGITVVFRNDP-LESVRVSS 159
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,009,464
Number of Sequences: 5004
Number of extensions: 59426
Number of successful extensions: 170
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -