Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0554
         (769 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)               118   7e-27
SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)              34   0.11 
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)               34   0.15 
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)                 30   1.8  
SB_31207| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_25421| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_37258| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)                   29   3.1  
SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)                  29   4.1  
SB_3342| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.5  
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)                     29   5.5  
SB_23808| Best HMM Match : zf-AN1 (HMM E-Value=5.5)                    28   7.2  
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_59069| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_34804| Best HMM Match : rve (HMM E-Value=1.2e-24)                   28   9.5  
SB_21446| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_5942| Best HMM Match : Sec7 (HMM E-Value=3.1e-09)                   28   9.5  
SB_23350| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score =  118 bits (283), Expect = 7e-27
 Identities = 55/87 (63%), Positives = 56/87 (64%)
 Frame = +1

Query: 256 ESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXX 435
           ESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK WR+WH            
Sbjct: 62  ESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRKWHTKVNVQQRRFAV 121

Query: 436 XXXXXXXXXXXXXQARGHIIEKIPGFP 516
                         ARGH IEKI   P
Sbjct: 122 CSALAASALPALIMARGHRIEKIAEVP 148



 Score =  107 bits (256), Expect = 1e-23
 Identities = 47/88 (53%), Positives = 67/88 (76%)
 Frame = +3

Query: 498 KDSRLPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRK 677
           K + +PLV++D ++ + KT  AV  L+ + A+ D+ K   S+++RAGKGKMRNRR + RK
Sbjct: 143 KIAEVPLVISDAIESVTKTSAAVKLLKAVNAYEDVEKCIDSKKIRAGKGKMRNRRTVMRK 202

Query: 678 GPLIIFNKDQGLTRAFRNIPGVELLNVN 761
           GPLII+N DQGL +AFRN+PGVEL +V+
Sbjct: 203 GPLIIYNNDQGLRQAFRNLPGVELQHVD 230



 Score = 77.8 bits (183), Expect = 9e-15
 Identities = 37/62 (59%), Positives = 47/62 (75%)
 Frame = +2

Query: 71  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 250
           ARP+++V++E  E+       LP VFKAPIRPDLVN VH +++KN RQPY V+K AGHQT
Sbjct: 2   ARPVITVFNENGESA--GQTTLPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNKLAGHQT 59

Query: 251 SA 256
           SA
Sbjct: 60  SA 61


>SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)
          Length = 628

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 19/54 (35%), Positives = 22/54 (40%)
 Frame = +1

Query: 232 GGWSPNQCESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 393
           GGW       WG G+    + R  GGG  R   G +G M  GG    P   W R
Sbjct: 14  GGWGQGPGGGWGRGQG-GGMGRGPGGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 66


>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
          Length = 1098

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 19/54 (35%), Positives = 22/54 (40%)
 Frame = +1

Query: 232 GGWSPNQCESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 393
           GGW       WG G+    + R  GGG  R   G +G M  GG    P   W R
Sbjct: 258 GGWGQGPGGGWGRGQGRG-MGRGPGGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 310


>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
          Length = 392

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = -3

Query: 362 RPPRHMLPKAP*PDLWVPPPRTRGIRATARPVPHDSH 252
           RPP H   + P PD WVP P  R        +P D H
Sbjct: 250 RPPPHHDMRGP-PDQWVPGPEQRRDNMRGPGMPPDMH 285


>SB_31207| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 194

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -3

Query: 665 TTTVAHFTLTSTKTLRLVHLKDIRPCLEAPQEDDSLFGLVDLLDFVGYNQ 516
           +T + HF     KT R +H+K        P E     GL+D+LD  G+ Q
Sbjct: 18  STVLHHFIDKHAKTPRFLHMKP-----NGPGEGGGSSGLLDMLDAAGFEQ 62


>SB_25421| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 501

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 317 WVPPPRTRGIRATARPVPHD 258
           W+PP RTR  R T  PV H+
Sbjct: 228 WMPPVRTRPARPTVMPVTHE 247


>SB_37258| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = -1

Query: 325 RTYGYHHHGHAEFGQQHVRYPMIRTGLVTS 236
           R  G H    A  G + VRYP IRTG +TS
Sbjct: 102 RGSGIHQIVRALIGYREVRYPTIRTGPLTS 131


>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
          Length = 453

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 358 HHDTCYRRHPDRTYGYHHHGHAEFGQQHVRY 266
           HH     RH  R + +HHH H E+ ++H RY
Sbjct: 325 HHQRHRHRHRHR-HRHHHHHHHEYNRRH-RY 353


>SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -1

Query: 367 TYVHHDTCYRRHPDRTYGYHHHGHA 293
           TY H DT  R+HPD     H   HA
Sbjct: 123 TYTHQDTQMRKHPDTQIYVHAPRHA 147


>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
          Length = 1080

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +1

Query: 244  PNQCESWGTGRAVARIPR-VRGGGTHRSGQGAFGNMCRGGR 363
            P   E   +G ++ R PR  RGGG    G G  G   RGGR
Sbjct: 982  PTPSEPSSSGSSIVRRPRRRRGGGGGGGGGGGGGGGRRGGR 1022


>SB_3342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 18/59 (30%), Positives = 32/59 (54%)
 Frame = -1

Query: 367 TYVHHDTCYRRHPDRTYGYHHHGHAEFGQQHVRYPMIRTGLVTSLLAHAVGLPRVLGHR 191
           +Y HH   +RRH      YHHH H +    H  + +I T L+ S+++ A+ +  ++ +R
Sbjct: 261 SYYHHHH-HRRHHLN--HYHHHYHLD---DHFIFIIIITTLIVSIISVAITVHILIPYR 313


>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
          Length = 612

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -1

Query: 358 HHDTCYRRHPDRTYGYHHHGHAEFGQQHVRYPMIR 254
           HH  CY  H    Y Y+ H H  + + H  YP  R
Sbjct: 20  HHYCCYCHH---RYCYYRHHHYCWYRHHYHYPCYR 51


>SB_23808| Best HMM Match : zf-AN1 (HMM E-Value=5.5)
          Length = 165

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = -3

Query: 740 TGDVAESASQTLILVEDYE--GSLTLDTTTVAHFTLTSTKTLRLVHLKDIRPCLEAPQED 567
           T   AE+A +    +E+    G +   +      T  STK LR + LKDI  C+E    +
Sbjct: 99  TSAAAEAALEPFQDIEETSALGQILPSSVDAVRLTKASTK-LRDIELKDIERCIEV---E 154

Query: 566 DSLFG 552
           D+ FG
Sbjct: 155 DTAFG 159


>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3486

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 138  GRGLAAPCTVSLFSEYTDTKGRATDRLI 55
            G+GL   C+V+L S Y  T+G+   RL+
Sbjct: 3163 GKGLTTWCSVNLDSVYLSTEGKEVYRLV 3190


>SB_59069| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 664

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
 Frame = -1

Query: 367 TYVHHDTCYRRHPDRTYGYH--HHGHAEFGQQHVRYPMIRT 251
           TY H DT   +HPD     H   H +A    +H  Y   RT
Sbjct: 323 TYTHQDTQMHKHPDTQMYVHAPRHANARGAPRHA-YARTRT 362


>SB_34804| Best HMM Match : rve (HMM E-Value=1.2e-24)
          Length = 1725

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +2

Query: 137  PFVFKAPIRPDLVNDVHVSMSKNSRQ--PYCVSKEAGHQTSANHGVPDVLLP 286
            PF F  P+R +L+N++H+ ++ ++ +  P+      G Q  AN GV    +P
Sbjct: 1264 PFYF--PLRLELINEIHLYITDDTGRTIPFLSGGFEGSQQVANPGVGLFTMP 1313


>SB_21446| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = -3

Query: 740 TGDVAESASQTLILVEDYE--GSLTLDTTTVAHFTLTSTKTLRLVHLKDIRPCLEAPQED 567
           T   AESA +    +E+    G +   +         STK LR + LKDI+ C+E    +
Sbjct: 97  TSAAAESALEPFQDIEETSALGQILPSSVDAVRLMKASTK-LRDIELKDIKRCIEV---E 152

Query: 566 DSLFG 552
           D+ FG
Sbjct: 153 DTAFG 157


>SB_5942| Best HMM Match : Sec7 (HMM E-Value=3.1e-09)
          Length = 304

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/45 (22%), Positives = 20/45 (44%)
 Frame = -1

Query: 364 YVHHDTCYRRHPDRTYGYHHHGHAEFGQQHVRYPMIRTGLVTSLL 230
           Y HH   +  H    + +HHH H       +    + T ++T+++
Sbjct: 158 YYHHHLLHHHHHHWHHHHHHHRHHHHSFTTIATTTVITTIITTVI 202


>SB_23350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 704

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -3

Query: 713 QTLILVEDYEGSLTLDTTTVAHFTLTSTKTL 621
           Q LIL+  Y   + L+T+++  F+L S KT+
Sbjct: 235 QELILIPYYTEKVALETSSLIEFSLLSAKTI 265


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,054,342
Number of Sequences: 59808
Number of extensions: 531394
Number of successful extensions: 1726
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1669
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)