Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0554
         (769 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   111   4e-25
U00031-9|AAK18871.1|  470|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical p...    29   4.8  
AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical...    29   4.8  
Z19154-9|CAA79552.2|  559|Caenorhabditis elegans Hypothetical pr...    28   8.4  
AF016679-4|AAB66158.1|  430|Caenorhabditis elegans Hypothetical ...    28   8.4  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  111 bits (268), Expect = 4e-25
 Identities = 51/90 (56%), Positives = 57/90 (63%)
 Frame = +1

Query: 247 NQCESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXX 426
           +  ESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K +RRWH         
Sbjct: 61  HSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKR 120

Query: 427 XXXXXXXXXXXXXXXXQARGHIIEKIPGFP 516
                           QARGH+I+++   P
Sbjct: 121 YAVSSAIAASGIPALLQARGHVIDQVAEVP 150



 Score =  111 bits (266), Expect = 7e-25
 Identities = 49/85 (57%), Positives = 67/85 (78%)
 Frame = +3

Query: 504 SRLPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGP 683
           + +PLVV+DKV+   KTK+AV+FLRR   W+DI KVY S+R RAGKGK+RNR+  Q+ GP
Sbjct: 147 AEVPLVVSDKVESFRKTKEAVVFLRRSHLWADIEKVYNSKRNRAGKGKLRNRQHKQKLGP 206

Query: 684 LIIFNKDQGLTRAFRNIPGVELLNV 758
           ++I+ +D    RAFRNIPGV+++NV
Sbjct: 207 VVIYGQDAECARAFRNIPGVDVMNV 231



 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 31/62 (50%), Positives = 41/62 (66%)
 Frame = +2

Query: 71  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 250
           ARPLV+VY EK E  Q   + LP VF+ PIRPDLV+ +   + +N RQ + V+ +AG Q 
Sbjct: 3   ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQH 61

Query: 251 SA 256
           SA
Sbjct: 62  SA 63


>U00031-9|AAK18871.1|  470|Caenorhabditis elegans Hypothetical
           protein B0361.8 protein.
          Length = 470

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = -3

Query: 671 LDTTTVAHFTLTSTKTLRLVHLKDIRPCLEAPQEDDSLFGLVDLLDFVGYN 519
           L+  +VA   L  TKT+RL+ +  IRP      + + L  + + L+ +GYN
Sbjct: 265 LNIESVAESLLEDTKTVRLLSVGQIRPEKNHKLQLEVLHDVKEPLEKMGYN 315


>Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical
           protein H38K22.1 protein.
          Length = 1570

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +3

Query: 522 VADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQ-RLRAGKGKMRNRRRIQRKGPLIIFN 698
           V   V E+ KTK  VI  + LKA ++ +K  K + R++A K  M     +    P   F+
Sbjct: 413 VVTGVTEVAKTKLEVISDKMLKACAERMKDKKPKVRIQAIKRLMDLYNHVMTSSPQPFFS 472

Query: 699 KD 704
           KD
Sbjct: 473 KD 474


>AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical
           protein H38K22.1 protein.
          Length = 1570

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +3

Query: 522 VADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQ-RLRAGKGKMRNRRRIQRKGPLIIFN 698
           V   V E+ KTK  VI  + LKA ++ +K  K + R++A K  M     +    P   F+
Sbjct: 413 VVTGVTEVAKTKLEVISDKMLKACAERMKDKKPKVRIQAIKRLMDLYNHVMTSSPQPFFS 472

Query: 699 KD 704
           KD
Sbjct: 473 KD 474


>Z19154-9|CAA79552.2|  559|Caenorhabditis elegans Hypothetical
           protein C40H1.1 protein.
          Length = 559

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -1

Query: 355 HDTCYRRHPDRTYGYHHHGHAEFGQ-QHVRYPMIRTGLVTSLLAH 224
           H +C + + +  +   H G  E  + +   YPM+RTG  T LL H
Sbjct: 471 HASCLQYYCEGCWDRMHIGKNEDNKLEDQHYPMVRTGDQTRLLKH 515


>AF016679-4|AAB66158.1|  430|Caenorhabditis elegans Hypothetical
           protein T28C12.3 protein.
          Length = 430

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = -3

Query: 725 ESASQTLILVEDYEGSLTLDTTTVAHFTL 639
           E + + L++++ +E + TL  TTVA+F+L
Sbjct: 303 EDSVKELVILDQWEEAKTLSLTTVAYFSL 331


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,213,563
Number of Sequences: 27780
Number of extensions: 375732
Number of successful extensions: 1218
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1206
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)