BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0554 (769 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S... 111 4e-25 At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str... 111 4e-25 At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr... 31 0.85 At1g57750.1 68414.m06552 cytochrome P450, putative similar to cy... 29 2.6 At2g44980.2 68415.m05601 transcription regulatory protein SNF2, ... 29 3.4 At2g44980.1 68415.m05600 transcription regulatory protein SNF2, ... 29 3.4 At2g43680.2 68415.m05430 calmodulin-binding family protein simil... 29 3.4 At2g43680.1 68415.m05429 calmodulin-binding family protein simil... 29 3.4 At2g35640.1 68415.m04371 hydroxyproline-rich glycoprotein family... 29 4.5 At4g39480.1 68417.m05585 cytochrome P450 family protein contains... 28 6.0 At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin; g... 28 7.9 At3g24650.1 68416.m03095 abscisic acid-insensitive protein 3 (AB... 28 7.9 >At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S roibosomal protein L4, Arabidopsis thaliana, EMBL:CAA79104 Length = 407 Score = 111 bits (268), Expect = 4e-25 Identities = 51/87 (58%), Positives = 54/87 (62%) Frame = +1 Query: 256 ESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXX 435 ESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH Sbjct: 71 ESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHAI 130 Query: 436 XXXXXXXXXXXXXQARGHIIEKIPGFP 516 ARGH IE +P P Sbjct: 131 VSAIAATAVPALVMARGHKIENVPEMP 157 Score = 85.0 bits (201), Expect = 5e-17 Identities = 40/84 (47%), Positives = 57/84 (67%), Gaps = 1/84 (1%) Frame = +3 Query: 510 LPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLI 689 +PLVV+D + + KT A+ L+++ A+ D K S +R GKGKMRNRR I RKGPL+ Sbjct: 156 MPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLV 215 Query: 690 IFNKDQG-LTRAFRNIPGVELLNV 758 +F + + +AFRN+PGVEL +V Sbjct: 216 VFGTEGAKIVKAFRNLPGVELCHV 239 Score = 72.9 bits (171), Expect = 2e-13 Identities = 37/66 (56%), Positives = 44/66 (66%), Gaps = 2/66 (3%) Frame = +2 Query: 65 SVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEA 238 + ARPLV+V + T Q LP V AP+RPD+VN VH +S NSRQPY VSK+A Sbjct: 5 AAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKA 64 Query: 239 GHQTSA 256 GHQTSA Sbjct: 65 GHQTSA 70 >At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong similarity to 60S ribosomal protein L1 GB:P49691 Length = 406 Score = 111 bits (268), Expect = 4e-25 Identities = 51/87 (58%), Positives = 54/87 (62%) Frame = +1 Query: 256 ESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXX 435 ESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH Sbjct: 70 ESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHAI 129 Query: 436 XXXXXXXXXXXXXQARGHIIEKIPGFP 516 ARGH IE +P P Sbjct: 130 VSAIAATAVPALVMARGHKIENVPEMP 156 Score = 83.8 bits (198), Expect = 1e-16 Identities = 39/84 (46%), Positives = 57/84 (67%), Gaps = 1/84 (1%) Frame = +3 Query: 510 LPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLI 689 +PLVV+D + + KT A+ L+++ A+ D K S +R GKGKMRNRR I RKGPL+ Sbjct: 155 MPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLV 214 Query: 690 IFNKD-QGLTRAFRNIPGVELLNV 758 ++ + + +AFRN+PGVEL +V Sbjct: 215 VYGTEGSKIVKAFRNLPGVELCHV 238 Score = 74.9 bits (176), Expect = 5e-14 Identities = 37/69 (53%), Positives = 48/69 (69%), Gaps = 2/69 (2%) Frame = +2 Query: 56 MSLSVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 229 M+ + ARPLV++ + + T Q + LP V AP+RPD+VN VH +S NSRQPY VS Sbjct: 1 MAAAAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 60 Query: 230 KEAGHQTSA 256 K+AGHQTSA Sbjct: 61 KKAGHQTSA 69 >At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/proline-rich protein GPRP - Arabidopsis thaliana, EMBL:X84315 Length = 173 Score = 31.1 bits (67), Expect = 0.85 Identities = 11/24 (45%), Positives = 13/24 (54%) Frame = -1 Query: 358 HHDTCYRRHPDRTYGYHHHGHAEF 287 HH Y H YGY +HGH +F Sbjct: 122 HHHGHYGHHHGHGYGYGYHGHGKF 145 >At1g57750.1 68414.m06552 cytochrome P450, putative similar to cytochrome P450 GI:4688670 from [Catharanthus roseus] Length = 497 Score = 29.5 bits (63), Expect = 2.6 Identities = 16/49 (32%), Positives = 29/49 (59%) Frame = +2 Query: 80 LVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 226 LV +++ SE+++ PLPF K+P +PD++ H + NS+ C+ Sbjct: 351 LVYLHAALSESMR-LYPPLPFNHKSPAKPDVLPSGH-KVDANSKIVICI 397 >At2g44980.2 68415.m05601 transcription regulatory protein SNF2, putative similar to SNF2P [Oryza sativa (japonica cultivar-group)] GI:23193483; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF00176: SNF2 family N-terminal domain; CG donor site annotated in one isoform based on protein alignments. Length = 870 Score = 29.1 bits (62), Expect = 3.4 Identities = 10/26 (38%), Positives = 17/26 (65%) Frame = -3 Query: 548 VDLLDFVGYNQGKPGIFSIMCPLA*T 471 + L ++ + QG PG F ++CPL+ T Sbjct: 88 ISFLSYLKFRQGLPGPFLVLCPLSVT 113 >At2g44980.1 68415.m05600 transcription regulatory protein SNF2, putative similar to SNF2P [Oryza sativa (japonica cultivar-group)] GI:23193483; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF00176: SNF2 family N-terminal domain; CG donor site annotated in one isoform based on protein alignments. Length = 851 Score = 29.1 bits (62), Expect = 3.4 Identities = 10/26 (38%), Positives = 17/26 (65%) Frame = -3 Query: 548 VDLLDFVGYNQGKPGIFSIMCPLA*T 471 + L ++ + QG PG F ++CPL+ T Sbjct: 88 ISFLSYLKFRQGLPGPFLVLCPLSVT 113 >At2g43680.2 68415.m05430 calmodulin-binding family protein similar to SF16 protein [Helianthus annuus] GI:560150; contains Pfam profile PF00612: IQ calmodulin-binding motif Length = 669 Score = 29.1 bits (62), Expect = 3.4 Identities = 13/33 (39%), Positives = 16/33 (48%) Frame = +3 Query: 354 WWTYVRPHEALAALAPSRQPPTAESGLGSSRCC 452 WW +V LA+ APS P + L SR C Sbjct: 465 WWNWVDRQNPLASPAPSYSQPQRDFRLTPSRLC 497 >At2g43680.1 68415.m05429 calmodulin-binding family protein similar to SF16 protein [Helianthus annuus] GI:560150; contains Pfam profile PF00612: IQ calmodulin-binding motif Length = 668 Score = 29.1 bits (62), Expect = 3.4 Identities = 13/33 (39%), Positives = 16/33 (48%) Frame = +3 Query: 354 WWTYVRPHEALAALAPSRQPPTAESGLGSSRCC 452 WW +V LA+ APS P + L SR C Sbjct: 464 WWNWVDRQNPLASPAPSYSQPQRDFRLTPSRLC 496 >At2g35640.1 68415.m04371 hydroxyproline-rich glycoprotein family protein contains proline-rich extensin domains, INTERPRO:IPR002965 Length = 340 Score = 28.7 bits (61), Expect = 4.5 Identities = 15/50 (30%), Positives = 22/50 (44%) Frame = -3 Query: 383 GFVGANIRPPRHMLPKAP*PDLWVPPPRTRGIRATARPVPHDSHWFGDQP 234 GFV + P H +P L PPP++ + + P P S F +P Sbjct: 174 GFVAPMMAQPMHQIPTTIVLSLPPPPPQSLSLSLPSPPQPPPSSSFHAEP 223 >At4g39480.1 68417.m05585 cytochrome P450 family protein contains Pfam profile: PF00067 cytochrome P450 Length = 989 Score = 28.3 bits (60), Expect = 6.0 Identities = 12/32 (37%), Positives = 20/32 (62%) Frame = +2 Query: 131 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 226 P+PF K+P +PD++ H + NSR +C+ Sbjct: 384 PVPFNHKSPAKPDVLPSGH-KVKANSRILFCL 414 >At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin; glycine-rich protein 18 (GRP18) PMID:11431566; Length = 228 Score = 27.9 bits (59), Expect = 7.9 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 3/64 (4%) Frame = +1 Query: 205 LEAALLREQGGWSPNQCESWGTGRAVARIPRVRGGGTHRSGQ---GAFGNMCRGGRMFAP 375 + AL+R + G P E + + + ++P G G G+ G FGN GG F Sbjct: 76 MAVALIRRRMGAKPT-AEGTSSAQPLLKLPVYGGYGGFWGGKKFSGTFGNKPGGGNPFGD 134 Query: 376 TKPW 387 W Sbjct: 135 ISKW 138 >At3g24650.1 68416.m03095 abscisic acid-insensitive protein 3 (ABI3) identical to abscisic acid-insensitive protein 3 GI:16146 SP:Q01593 from [Arabidopsis thaliana], (Plant Cell 4 (10), 1251-1261 (1992)) Length = 720 Score = 27.9 bits (59), Expect = 7.9 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%) Frame = -3 Query: 383 GFVGANIRPPR-HMLPKAP*PDLWVPPPRTRGIRATARPVPHDSHW--FGD 240 G++ A PP+ LP P W PPP++ + P+P S + FGD Sbjct: 370 GYMPAPNYPPQPEFLPLLESPPSWPPPPQSGPMPHQQFPMPPTSQYNQFGD 420 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,556,217 Number of Sequences: 28952 Number of extensions: 365085 Number of successful extensions: 1317 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 1233 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1307 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1721869952 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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