Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0554
(769 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S... 111 4e-25
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str... 111 4e-25
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr... 31 0.85
At1g57750.1 68414.m06552 cytochrome P450, putative similar to cy... 29 2.6
At2g44980.2 68415.m05601 transcription regulatory protein SNF2, ... 29 3.4
At2g44980.1 68415.m05600 transcription regulatory protein SNF2, ... 29 3.4
At2g43680.2 68415.m05430 calmodulin-binding family protein simil... 29 3.4
At2g43680.1 68415.m05429 calmodulin-binding family protein simil... 29 3.4
At2g35640.1 68415.m04371 hydroxyproline-rich glycoprotein family... 29 4.5
At4g39480.1 68417.m05585 cytochrome P450 family protein contains... 28 6.0
At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin; g... 28 7.9
At3g24650.1 68416.m03095 abscisic acid-insensitive protein 3 (AB... 28 7.9
>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
roibosomal protein L4, Arabidopsis thaliana,
EMBL:CAA79104
Length = 407
Score = 111 bits (268), Expect = 4e-25
Identities = 51/87 (58%), Positives = 54/87 (62%)
Frame = +1
Query: 256 ESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXX 435
ESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH
Sbjct: 71 ESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHAI 130
Query: 436 XXXXXXXXXXXXXQARGHIIEKIPGFP 516
ARGH IE +P P
Sbjct: 131 VSAIAATAVPALVMARGHKIENVPEMP 157
Score = 85.0 bits (201), Expect = 5e-17
Identities = 40/84 (47%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
Frame = +3
Query: 510 LPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLI 689
+PLVV+D + + KT A+ L+++ A+ D K S +R GKGKMRNRR I RKGPL+
Sbjct: 156 MPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLV 215
Query: 690 IFNKDQG-LTRAFRNIPGVELLNV 758
+F + + +AFRN+PGVEL +V
Sbjct: 216 VFGTEGAKIVKAFRNLPGVELCHV 239
Score = 72.9 bits (171), Expect = 2e-13
Identities = 37/66 (56%), Positives = 44/66 (66%), Gaps = 2/66 (3%)
Frame = +2
Query: 65 SVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEA 238
+ ARPLV+V + T Q LP V AP+RPD+VN VH +S NSRQPY VSK+A
Sbjct: 5 AAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKA 64
Query: 239 GHQTSA 256
GHQTSA
Sbjct: 65 GHQTSA 70
>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
similarity to 60S ribosomal protein L1 GB:P49691
Length = 406
Score = 111 bits (268), Expect = 4e-25
Identities = 51/87 (58%), Positives = 54/87 (62%)
Frame = +1
Query: 256 ESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXX 435
ESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH
Sbjct: 70 ESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHAI 129
Query: 436 XXXXXXXXXXXXXQARGHIIEKIPGFP 516
ARGH IE +P P
Sbjct: 130 VSAIAATAVPALVMARGHKIENVPEMP 156
Score = 83.8 bits (198), Expect = 1e-16
Identities = 39/84 (46%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
Frame = +3
Query: 510 LPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLI 689
+PLVV+D + + KT A+ L+++ A+ D K S +R GKGKMRNRR I RKGPL+
Sbjct: 155 MPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLV 214
Query: 690 IFNKD-QGLTRAFRNIPGVELLNV 758
++ + + +AFRN+PGVEL +V
Sbjct: 215 VYGTEGSKIVKAFRNLPGVELCHV 238
Score = 74.9 bits (176), Expect = 5e-14
Identities = 37/69 (53%), Positives = 48/69 (69%), Gaps = 2/69 (2%)
Frame = +2
Query: 56 MSLSVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 229
M+ + ARPLV++ + + T Q + LP V AP+RPD+VN VH +S NSRQPY VS
Sbjct: 1 MAAAAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 60
Query: 230 KEAGHQTSA 256
K+AGHQTSA
Sbjct: 61 KKAGHQTSA 69
>At5g17650.1 68418.m02069 glycine/proline-rich protein
glycine/proline-rich protein GPRP - Arabidopsis
thaliana, EMBL:X84315
Length = 173
Score = 31.1 bits (67), Expect = 0.85
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -1
Query: 358 HHDTCYRRHPDRTYGYHHHGHAEF 287
HH Y H YGY +HGH +F
Sbjct: 122 HHHGHYGHHHGHGYGYGYHGHGKF 145
>At1g57750.1 68414.m06552 cytochrome P450, putative similar to
cytochrome P450 GI:4688670 from [Catharanthus roseus]
Length = 497
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +2
Query: 80 LVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 226
LV +++ SE+++ PLPF K+P +PD++ H + NS+ C+
Sbjct: 351 LVYLHAALSESMR-LYPPLPFNHKSPAKPDVLPSGH-KVDANSKIVICI 397
>At2g44980.2 68415.m05601 transcription regulatory protein SNF2,
putative similar to SNF2P [Oryza sativa (japonica
cultivar-group)] GI:23193483; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain; CG donor site annotated
in one isoform based on protein alignments.
Length = 870
Score = 29.1 bits (62), Expect = 3.4
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 548 VDLLDFVGYNQGKPGIFSIMCPLA*T 471
+ L ++ + QG PG F ++CPL+ T
Sbjct: 88 ISFLSYLKFRQGLPGPFLVLCPLSVT 113
>At2g44980.1 68415.m05600 transcription regulatory protein SNF2,
putative similar to SNF2P [Oryza sativa (japonica
cultivar-group)] GI:23193483; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain; CG donor site annotated
in one isoform based on protein alignments.
Length = 851
Score = 29.1 bits (62), Expect = 3.4
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 548 VDLLDFVGYNQGKPGIFSIMCPLA*T 471
+ L ++ + QG PG F ++CPL+ T
Sbjct: 88 ISFLSYLKFRQGLPGPFLVLCPLSVT 113
>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 669
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +3
Query: 354 WWTYVRPHEALAALAPSRQPPTAESGLGSSRCC 452
WW +V LA+ APS P + L SR C
Sbjct: 465 WWNWVDRQNPLASPAPSYSQPQRDFRLTPSRLC 497
>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 668
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +3
Query: 354 WWTYVRPHEALAALAPSRQPPTAESGLGSSRCC 452
WW +V LA+ APS P + L SR C
Sbjct: 464 WWNWVDRQNPLASPAPSYSQPQRDFRLTPSRLC 496
>At2g35640.1 68415.m04371 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 340
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -3
Query: 383 GFVGANIRPPRHMLPKAP*PDLWVPPPRTRGIRATARPVPHDSHWFGDQP 234
GFV + P H +P L PPP++ + + P P S F +P
Sbjct: 174 GFVAPMMAQPMHQIPTTIVLSLPPPPPQSLSLSLPSPPQPPPSSSFHAEP 223
>At4g39480.1 68417.m05585 cytochrome P450 family protein contains
Pfam profile: PF00067 cytochrome P450
Length = 989
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 131 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 226
P+PF K+P +PD++ H + NSR +C+
Sbjct: 384 PVPFNHKSPAKPDVLPSGH-KVKANSRILFCL 414
>At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin;
glycine-rich protein 18 (GRP18) PMID:11431566;
Length = 228
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Frame = +1
Query: 205 LEAALLREQGGWSPNQCESWGTGRAVARIPRVRGGGTHRSGQ---GAFGNMCRGGRMFAP 375
+ AL+R + G P E + + + ++P G G G+ G FGN GG F
Sbjct: 76 MAVALIRRRMGAKPT-AEGTSSAQPLLKLPVYGGYGGFWGGKKFSGTFGNKPGGGNPFGD 134
Query: 376 TKPW 387
W
Sbjct: 135 ISKW 138
>At3g24650.1 68416.m03095 abscisic acid-insensitive protein 3 (ABI3)
identical to abscisic acid-insensitive protein 3
GI:16146 SP:Q01593 from [Arabidopsis thaliana], (Plant
Cell 4 (10), 1251-1261 (1992))
Length = 720
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = -3
Query: 383 GFVGANIRPPR-HMLPKAP*PDLWVPPPRTRGIRATARPVPHDSHW--FGD 240
G++ A PP+ LP P W PPP++ + P+P S + FGD
Sbjct: 370 GYMPAPNYPPQPEFLPLLESPPSWPPPPQSGPMPHQQFPMPPTSQYNQFGD 420
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,556,217
Number of Sequences: 28952
Number of extensions: 365085
Number of successful extensions: 1317
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1307
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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