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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0554
         (769 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...   111   4e-25
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...   111   4e-25
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr...    31   0.85 
At1g57750.1 68414.m06552 cytochrome P450, putative similar to cy...    29   2.6  
At2g44980.2 68415.m05601 transcription regulatory protein SNF2, ...    29   3.4  
At2g44980.1 68415.m05600 transcription regulatory protein SNF2, ...    29   3.4  
At2g43680.2 68415.m05430 calmodulin-binding family protein simil...    29   3.4  
At2g43680.1 68415.m05429 calmodulin-binding family protein simil...    29   3.4  
At2g35640.1 68415.m04371 hydroxyproline-rich glycoprotein family...    29   4.5  
At4g39480.1 68417.m05585 cytochrome P450 family protein contains...    28   6.0  
At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin; g...    28   7.9  
At3g24650.1 68416.m03095 abscisic acid-insensitive protein 3 (AB...    28   7.9  

>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score =  111 bits (268), Expect = 4e-25
 Identities = 51/87 (58%), Positives = 54/87 (62%)
 Frame = +1

Query: 256 ESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXX 435
           ESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH            
Sbjct: 71  ESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHAI 130

Query: 436 XXXXXXXXXXXXXQARGHIIEKIPGFP 516
                         ARGH IE +P  P
Sbjct: 131 VSAIAATAVPALVMARGHKIENVPEMP 157



 Score = 85.0 bits (201), Expect = 5e-17
 Identities = 40/84 (47%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
 Frame = +3

Query: 510 LPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLI 689
           +PLVV+D  + + KT  A+  L+++ A+ D  K   S  +R GKGKMRNRR I RKGPL+
Sbjct: 156 MPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLV 215

Query: 690 IFNKDQG-LTRAFRNIPGVELLNV 758
           +F  +   + +AFRN+PGVEL +V
Sbjct: 216 VFGTEGAKIVKAFRNLPGVELCHV 239



 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 37/66 (56%), Positives = 44/66 (66%), Gaps = 2/66 (3%)
 Frame = +2

Query: 65  SVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEA 238
           + ARPLV+V     +  T Q     LP V  AP+RPD+VN VH  +S NSRQPY VSK+A
Sbjct: 5   AAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKA 64

Query: 239 GHQTSA 256
           GHQTSA
Sbjct: 65  GHQTSA 70


>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score =  111 bits (268), Expect = 4e-25
 Identities = 51/87 (58%), Positives = 54/87 (62%)
 Frame = +1

Query: 256 ESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXX 435
           ESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH            
Sbjct: 70  ESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHAI 129

Query: 436 XXXXXXXXXXXXXQARGHIIEKIPGFP 516
                         ARGH IE +P  P
Sbjct: 130 VSAIAATAVPALVMARGHKIENVPEMP 156



 Score = 83.8 bits (198), Expect = 1e-16
 Identities = 39/84 (46%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
 Frame = +3

Query: 510 LPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLI 689
           +PLVV+D  + + KT  A+  L+++ A+ D  K   S  +R GKGKMRNRR I RKGPL+
Sbjct: 155 MPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLV 214

Query: 690 IFNKD-QGLTRAFRNIPGVELLNV 758
           ++  +   + +AFRN+PGVEL +V
Sbjct: 215 VYGTEGSKIVKAFRNLPGVELCHV 238



 Score = 74.9 bits (176), Expect = 5e-14
 Identities = 37/69 (53%), Positives = 48/69 (69%), Gaps = 2/69 (2%)
 Frame = +2

Query: 56  MSLSVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 229
           M+ + ARPLV++ +   +  T Q +   LP V  AP+RPD+VN VH  +S NSRQPY VS
Sbjct: 1   MAAAAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 60

Query: 230 KEAGHQTSA 256
           K+AGHQTSA
Sbjct: 61  KKAGHQTSA 69


>At5g17650.1 68418.m02069 glycine/proline-rich protein
           glycine/proline-rich protein GPRP - Arabidopsis
           thaliana, EMBL:X84315
          Length = 173

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 358 HHDTCYRRHPDRTYGYHHHGHAEF 287
           HH   Y  H    YGY +HGH +F
Sbjct: 122 HHHGHYGHHHGHGYGYGYHGHGKF 145


>At1g57750.1 68414.m06552 cytochrome P450, putative similar to
           cytochrome P450 GI:4688670 from [Catharanthus roseus]
          Length = 497

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/49 (32%), Positives = 29/49 (59%)
 Frame = +2

Query: 80  LVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 226
           LV +++  SE+++    PLPF  K+P +PD++   H  +  NS+   C+
Sbjct: 351 LVYLHAALSESMR-LYPPLPFNHKSPAKPDVLPSGH-KVDANSKIVICI 397


>At2g44980.2 68415.m05601 transcription regulatory protein SNF2,
           putative similar to SNF2P [Oryza sativa (japonica
           cultivar-group)] GI:23193483; contains Pfam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain; CG donor site annotated
           in one isoform based on protein alignments.
          Length = 870

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 548 VDLLDFVGYNQGKPGIFSIMCPLA*T 471
           +  L ++ + QG PG F ++CPL+ T
Sbjct: 88  ISFLSYLKFRQGLPGPFLVLCPLSVT 113


>At2g44980.1 68415.m05600 transcription regulatory protein SNF2,
           putative similar to SNF2P [Oryza sativa (japonica
           cultivar-group)] GI:23193483; contains Pfam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain; CG donor site annotated
           in one isoform based on protein alignments.
          Length = 851

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 548 VDLLDFVGYNQGKPGIFSIMCPLA*T 471
           +  L ++ + QG PG F ++CPL+ T
Sbjct: 88  ISFLSYLKFRQGLPGPFLVLCPLSVT 113


>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 669

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +3

Query: 354 WWTYVRPHEALAALAPSRQPPTAESGLGSSRCC 452
           WW +V     LA+ APS   P  +  L  SR C
Sbjct: 465 WWNWVDRQNPLASPAPSYSQPQRDFRLTPSRLC 497


>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 668

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +3

Query: 354 WWTYVRPHEALAALAPSRQPPTAESGLGSSRCC 452
           WW +V     LA+ APS   P  +  L  SR C
Sbjct: 464 WWNWVDRQNPLASPAPSYSQPQRDFRLTPSRLC 496


>At2g35640.1 68415.m04371 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 340

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = -3

Query: 383 GFVGANIRPPRHMLPKAP*PDLWVPPPRTRGIRATARPVPHDSHWFGDQP 234
           GFV   +  P H +P      L  PPP++  +   + P P  S  F  +P
Sbjct: 174 GFVAPMMAQPMHQIPTTIVLSLPPPPPQSLSLSLPSPPQPPPSSSFHAEP 223


>At4g39480.1 68417.m05585 cytochrome P450 family protein contains
           Pfam profile: PF00067 cytochrome P450
          Length = 989

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 131 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 226
           P+PF  K+P +PD++   H  +  NSR  +C+
Sbjct: 384 PVPFNHKSPAKPDVLPSGH-KVKANSRILFCL 414


>At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin;
           glycine-rich protein 18 (GRP18) PMID:11431566;
          Length = 228

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
 Frame = +1

Query: 205 LEAALLREQGGWSPNQCESWGTGRAVARIPRVRGGGTHRSGQ---GAFGNMCRGGRMFAP 375
           +  AL+R + G  P   E   + + + ++P   G G    G+   G FGN   GG  F  
Sbjct: 76  MAVALIRRRMGAKPT-AEGTSSAQPLLKLPVYGGYGGFWGGKKFSGTFGNKPGGGNPFGD 134

Query: 376 TKPW 387
              W
Sbjct: 135 ISKW 138


>At3g24650.1 68416.m03095 abscisic acid-insensitive protein 3 (ABI3)
           identical to abscisic acid-insensitive protein 3
           GI:16146 SP:Q01593 from [Arabidopsis thaliana], (Plant
           Cell 4 (10), 1251-1261 (1992))
          Length = 720

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = -3

Query: 383 GFVGANIRPPR-HMLPKAP*PDLWVPPPRTRGIRATARPVPHDSHW--FGD 240
           G++ A   PP+   LP    P  W PPP++  +     P+P  S +  FGD
Sbjct: 370 GYMPAPNYPPQPEFLPLLESPPSWPPPPQSGPMPHQQFPMPPTSQYNQFGD 420


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,556,217
Number of Sequences: 28952
Number of extensions: 365085
Number of successful extensions: 1317
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1307
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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