BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0553 (751 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 52 9e-08 SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr... 28 1.6 SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 26 6.6 SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ... 26 6.6 SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 26 6.6 SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 6.6 >SPAC4G9.04c |||cleavage and polyadenylation specificity factor |Schizosaccharomyces pombe|chr 1|||Manual Length = 638 Score = 52.0 bits (119), Expect = 9e-08 Identities = 23/44 (52%), Positives = 33/44 (75%) Frame = +1 Query: 280 EYASSLADLTVNSKPLINMLTILAEENIEHAGVIVETVEKHLEK 411 +Y S+L DLT NSKP+I+ LT +A+EN +A IV +EKH++K Sbjct: 7 DYLSALEDLTFNSKPIIHTLTYIAQENEPYAISIVNAIEKHIQK 50 >SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr 2|||Manual Length = 904 Score = 27.9 bits (59), Expect = 1.6 Identities = 12/36 (33%), Positives = 21/36 (58%) Frame = -2 Query: 474 YSERVDNNSSRVYFLLKMEIHLLQMLFHGFNDNPSV 367 Y+E V + + + LK + H + M+ G ND+PS+ Sbjct: 715 YAEAVPSQKAEIIQKLKDQKHCVAMVGDGINDSPSL 750 >SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces pombe|chr 3|||Manual Length = 2812 Score = 25.8 bits (54), Expect = 6.6 Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 5/104 (4%) Frame = -2 Query: 474 YSERVD-NNSSRV-YFLLKMEIHLLQMLFH---GFNDNPSVFDILFRKNCEHIYQWLAVD 310 ++ RV NNS+ + +F K + LF GF+ PSV D++ R+ ++ A D Sbjct: 1282 FANRVSFNNSTAIPFFSTKSVLWYCNRLFQELEGFSSIPSVIDLVLRRLAIQLH--FATD 1339 Query: 309 GQIRQTGRIFLGDFFRHDDGRPRWHAKHELLASTAHQLLNITRT 178 +++ T L F D + ++ A QLL+I T Sbjct: 1340 EELQVTISFRLCAFLCFSDPFITSNYLVMIVLRIARQLLSIPCT 1383 >SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces pombe|chr 1|||Manual Length = 501 Score = 25.8 bits (54), Expect = 6.6 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = +1 Query: 241 SWAAVIMSKEISEEYASSLADLTVNSKP 324 +W A+ S ISE Y SS+++ T++ P Sbjct: 35 NWLAITHSLPISEWYKSSISEWTLDYPP 62 >SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1573 Score = 25.8 bits (54), Expect = 6.6 Identities = 10/27 (37%), Positives = 18/27 (66%) Frame = -2 Query: 252 GRPRWHAKHELLASTAHQLLNITRTVQ 172 G+P H++ +L STA++LL + T + Sbjct: 1300 GKPIKHSRSPILHSTAYELLGLPHTYE 1326 >SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||Manual Length = 3971 Score = 25.8 bits (54), Expect = 6.6 Identities = 17/55 (30%), Positives = 25/55 (45%) Frame = -3 Query: 500 ASTPTTFSNIVNVWTITLQECIFC*KWKFTFSKCFSTVSTITPACSIFSSARIVS 336 +STP T S +VN T + T S +T ++IT + + SS I S Sbjct: 2384 SSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTSITSSSVLNSSTPITS 2438 Score = 25.8 bits (54), Expect = 6.6 Identities = 23/93 (24%), Positives = 40/93 (43%) Frame = -3 Query: 500 ASTPTTFSNIVNVWTITLQECIFC*KWKFTFSKCFSTVSTITPACSIFSSARIVSIFING 321 +STP T S +VN T + T S ++ + IT + + SS I S + Sbjct: 2492 SSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNSSTPITSSSVLNSSTPITSSTVVN 2551 Query: 320 LLLTVRSAKLDAYSSEISFDMMTAAHDGMPNTN 222 + S+ + S+ I+ +TA + P T+ Sbjct: 2552 TSTPITSSTVVNSSTPIT--SLTALNSSTPITS 2582 Score = 25.4 bits (53), Expect = 8.7 Identities = 17/55 (30%), Positives = 24/55 (43%) Frame = -3 Query: 500 ASTPTTFSNIVNVWTITLQECIFC*KWKFTFSKCFSTVSTITPACSIFSSARIVS 336 +STP T S +VN T + T S +T + IT + + SS I S Sbjct: 476 SSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITS 530 Score = 25.4 bits (53), Expect = 8.7 Identities = 24/92 (26%), Positives = 38/92 (41%) Frame = -3 Query: 497 STPTTFSNIVNVWTITLQECIFC*KWKFTFSKCFSTVSTITPACSIFSSARIVSIFINGL 318 STP T S +VN T + T S +T + IT + + SS I S + Sbjct: 837 STPITSSTVVNSSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVNT 896 Query: 317 LLTVRSAKLDAYSSEISFDMMTAAHDGMPNTN 222 + S+ + S+ I+ TA + P T+ Sbjct: 897 STPITSSTVVNSSTPIT--SSTALNTSTPITS 926 Score = 25.4 bits (53), Expect = 8.7 Identities = 17/55 (30%), Positives = 24/55 (43%) Frame = -3 Query: 500 ASTPTTFSNIVNVWTITLQECIFC*KWKFTFSKCFSTVSTITPACSIFSSARIVS 336 +STP T S +VN T + T S +T + IT + + SS I S Sbjct: 884 SSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITS 938 Score = 25.4 bits (53), Expect = 8.7 Identities = 17/55 (30%), Positives = 24/55 (43%) Frame = -3 Query: 500 ASTPTTFSNIVNVWTITLQECIFC*KWKFTFSKCFSTVSTITPACSIFSSARIVS 336 +STP T S +VN T + T S +T + IT + + SS I S Sbjct: 1040 SSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITS 1094 Score = 25.4 bits (53), Expect = 8.7 Identities = 17/55 (30%), Positives = 24/55 (43%) Frame = -3 Query: 500 ASTPTTFSNIVNVWTITLQECIFC*KWKFTFSKCFSTVSTITPACSIFSSARIVS 336 +STP T S +VN T + T S +T + IT + + SS I S Sbjct: 1436 SSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITS 1490 Score = 25.4 bits (53), Expect = 8.7 Identities = 17/55 (30%), Positives = 24/55 (43%) Frame = -3 Query: 500 ASTPTTFSNIVNVWTITLQECIFC*KWKFTFSKCFSTVSTITPACSIFSSARIVS 336 +STP T S +VN T + T S +T + IT + + SS I S Sbjct: 1556 SSTPITSSTVVNTSTPITSSSVVNSSTPITSSTALNTSTPITSSSVLNSSTPITS 1610 Score = 25.4 bits (53), Expect = 8.7 Identities = 17/55 (30%), Positives = 24/55 (43%) Frame = -3 Query: 500 ASTPTTFSNIVNVWTITLQECIFC*KWKFTFSKCFSTVSTITPACSIFSSARIVS 336 +STP T S +VN T + T S +T + IT + + SS I S Sbjct: 1664 SSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITS 1718 Score = 25.4 bits (53), Expect = 8.7 Identities = 17/55 (30%), Positives = 24/55 (43%) Frame = -3 Query: 500 ASTPTTFSNIVNVWTITLQECIFC*KWKFTFSKCFSTVSTITPACSIFSSARIVS 336 +STP T S +VN T + T S +T + IT + + SS I S Sbjct: 1820 SSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITS 1874 Score = 25.4 bits (53), Expect = 8.7 Identities = 17/55 (30%), Positives = 24/55 (43%) Frame = -3 Query: 500 ASTPTTFSNIVNVWTITLQECIFC*KWKFTFSKCFSTVSTITPACSIFSSARIVS 336 +STP T S +VN T + T S +T + IT + + SS I S Sbjct: 2012 SSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITS 2066 Score = 25.4 bits (53), Expect = 8.7 Identities = 17/55 (30%), Positives = 24/55 (43%) Frame = -3 Query: 500 ASTPTTFSNIVNVWTITLQECIFC*KWKFTFSKCFSTVSTITPACSIFSSARIVS 336 +STP T S +VN T + T S +T + IT + + SS I S Sbjct: 2276 SSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITS 2330 Score = 25.4 bits (53), Expect = 8.7 Identities = 16/55 (29%), Positives = 25/55 (45%) Frame = -3 Query: 500 ASTPTTFSNIVNVWTITLQECIFC*KWKFTFSKCFSTVSTITPACSIFSSARIVS 336 +STP T S +VN T + T S +T + IT + ++ +S I S Sbjct: 2324 SSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTALNTSTSITS 2378 Score = 25.4 bits (53), Expect = 8.7 Identities = 17/55 (30%), Positives = 24/55 (43%) Frame = -3 Query: 500 ASTPTTFSNIVNVWTITLQECIFC*KWKFTFSKCFSTVSTITPACSIFSSARIVS 336 +STP T S +VN T + T S +T + IT + + SS I S Sbjct: 2588 SSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITS 2642 Score = 25.4 bits (53), Expect = 8.7 Identities = 17/55 (30%), Positives = 24/55 (43%) Frame = -3 Query: 500 ASTPTTFSNIVNVWTITLQECIFC*KWKFTFSKCFSTVSTITPACSIFSSARIVS 336 +STP T S +VN T + T S +T + IT + + SS I S Sbjct: 2660 SSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITS 2714 Score = 25.4 bits (53), Expect = 8.7 Identities = 17/55 (30%), Positives = 24/55 (43%) Frame = -3 Query: 500 ASTPTTFSNIVNVWTITLQECIFC*KWKFTFSKCFSTVSTITPACSIFSSARIVS 336 +STP T S +VN T + T S +T + IT + + SS I S Sbjct: 2684 SSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITS 2738 Score = 25.4 bits (53), Expect = 8.7 Identities = 17/55 (30%), Positives = 24/55 (43%) Frame = -3 Query: 500 ASTPTTFSNIVNVWTITLQECIFC*KWKFTFSKCFSTVSTITPACSIFSSARIVS 336 +STP T S +VN T + T S +T + IT + + SS I S Sbjct: 2888 SSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITS 2942 Score = 25.4 bits (53), Expect = 8.7 Identities = 17/55 (30%), Positives = 24/55 (43%) Frame = -3 Query: 500 ASTPTTFSNIVNVWTITLQECIFC*KWKFTFSKCFSTVSTITPACSIFSSARIVS 336 +STP T S +VN T + T S +T + IT + + SS I S Sbjct: 2912 SSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITS 2966 Score = 25.4 bits (53), Expect = 8.7 Identities = 17/55 (30%), Positives = 24/55 (43%) Frame = -3 Query: 500 ASTPTTFSNIVNVWTITLQECIFC*KWKFTFSKCFSTVSTITPACSIFSSARIVS 336 +STP T S +VN T + T S +T + IT + + SS I S Sbjct: 2984 SSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITS 3038 Score = 25.4 bits (53), Expect = 8.7 Identities = 17/55 (30%), Positives = 24/55 (43%) Frame = -3 Query: 500 ASTPTTFSNIVNVWTITLQECIFC*KWKFTFSKCFSTVSTITPACSIFSSARIVS 336 +STP T S +VN T + T S +T + IT + + SS I S Sbjct: 3008 SSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSTVLNSSTPITS 3062 Score = 25.4 bits (53), Expect = 8.7 Identities = 17/55 (30%), Positives = 24/55 (43%) Frame = -3 Query: 500 ASTPTTFSNIVNVWTITLQECIFC*KWKFTFSKCFSTVSTITPACSIFSSARIVS 336 +STP T S +VN T + T S +T + IT + + SS I S Sbjct: 3248 SSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITS 3302 Score = 25.4 bits (53), Expect = 8.7 Identities = 17/55 (30%), Positives = 24/55 (43%) Frame = -3 Query: 500 ASTPTTFSNIVNVWTITLQECIFC*KWKFTFSKCFSTVSTITPACSIFSSARIVS 336 +STP T S +VN T + T S +T + IT + + SS I S Sbjct: 3272 SSTPITSSTVVNTSTPITSSTVVNSSTPITSSTTLNTSTPITSSSVLNSSTAITS 3326 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,290,975 Number of Sequences: 5004 Number of extensions: 73626 Number of successful extensions: 236 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 169 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 234 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 357280532 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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