Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0553
(751 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 52 9e-08
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr... 28 1.6
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 26 6.6
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ... 26 6.6
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 26 6.6
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 6.6
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 52.0 bits (119), Expect = 9e-08
Identities = 23/44 (52%), Positives = 33/44 (75%)
Frame = +1
Query: 280 EYASSLADLTVNSKPLINMLTILAEENIEHAGVIVETVEKHLEK 411
+Y S+L DLT NSKP+I+ LT +A+EN +A IV +EKH++K
Sbjct: 7 DYLSALEDLTFNSKPIIHTLTYIAQENEPYAISIVNAIEKHIQK 50
>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 904
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -2
Query: 474 YSERVDNNSSRVYFLLKMEIHLLQMLFHGFNDNPSV 367
Y+E V + + + LK + H + M+ G ND+PS+
Sbjct: 715 YAEAVPSQKAEIIQKLKDQKHCVAMVGDGINDSPSL 750
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.8 bits (54), Expect = 6.6
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 5/104 (4%)
Frame = -2
Query: 474 YSERVD-NNSSRV-YFLLKMEIHLLQMLFH---GFNDNPSVFDILFRKNCEHIYQWLAVD 310
++ RV NNS+ + +F K + LF GF+ PSV D++ R+ ++ A D
Sbjct: 1282 FANRVSFNNSTAIPFFSTKSVLWYCNRLFQELEGFSSIPSVIDLVLRRLAIQLH--FATD 1339
Query: 309 GQIRQTGRIFLGDFFRHDDGRPRWHAKHELLASTAHQLLNITRT 178
+++ T L F D + ++ A QLL+I T
Sbjct: 1340 EELQVTISFRLCAFLCFSDPFITSNYLVMIVLRIARQLLSIPCT 1383
>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 501
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 241 SWAAVIMSKEISEEYASSLADLTVNSKP 324
+W A+ S ISE Y SS+++ T++ P
Sbjct: 35 NWLAITHSLPISEWYKSSISEWTLDYPP 62
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -2
Query: 252 GRPRWHAKHELLASTAHQLLNITRTVQ 172
G+P H++ +L STA++LL + T +
Sbjct: 1300 GKPIKHSRSPILHSTAYELLGLPHTYE 1326
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.8 bits (54), Expect = 6.6
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = -3
Query: 500 ASTPTTFSNIVNVWTITLQECIFC*KWKFTFSKCFSTVSTITPACSIFSSARIVS 336
+STP T S +VN T + T S +T ++IT + + SS I S
Sbjct: 2384 SSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTSITSSSVLNSSTPITS 2438
Score = 25.8 bits (54), Expect = 6.6
Identities = 23/93 (24%), Positives = 40/93 (43%)
Frame = -3
Query: 500 ASTPTTFSNIVNVWTITLQECIFC*KWKFTFSKCFSTVSTITPACSIFSSARIVSIFING 321
+STP T S +VN T + T S ++ + IT + + SS I S +
Sbjct: 2492 SSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNSSTPITSSSVLNSSTPITSSTVVN 2551
Query: 320 LLLTVRSAKLDAYSSEISFDMMTAAHDGMPNTN 222
+ S+ + S+ I+ +TA + P T+
Sbjct: 2552 TSTPITSSTVVNSSTPIT--SLTALNSSTPITS 2582
Score = 25.4 bits (53), Expect = 8.7
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = -3
Query: 500 ASTPTTFSNIVNVWTITLQECIFC*KWKFTFSKCFSTVSTITPACSIFSSARIVS 336
+STP T S +VN T + T S +T + IT + + SS I S
Sbjct: 476 SSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITS 530
Score = 25.4 bits (53), Expect = 8.7
Identities = 24/92 (26%), Positives = 38/92 (41%)
Frame = -3
Query: 497 STPTTFSNIVNVWTITLQECIFC*KWKFTFSKCFSTVSTITPACSIFSSARIVSIFINGL 318
STP T S +VN T + T S +T + IT + + SS I S +
Sbjct: 837 STPITSSTVVNSSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVNT 896
Query: 317 LLTVRSAKLDAYSSEISFDMMTAAHDGMPNTN 222
+ S+ + S+ I+ TA + P T+
Sbjct: 897 STPITSSTVVNSSTPIT--SSTALNTSTPITS 926
Score = 25.4 bits (53), Expect = 8.7
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = -3
Query: 500 ASTPTTFSNIVNVWTITLQECIFC*KWKFTFSKCFSTVSTITPACSIFSSARIVS 336
+STP T S +VN T + T S +T + IT + + SS I S
Sbjct: 884 SSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITS 938
Score = 25.4 bits (53), Expect = 8.7
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = -3
Query: 500 ASTPTTFSNIVNVWTITLQECIFC*KWKFTFSKCFSTVSTITPACSIFSSARIVS 336
+STP T S +VN T + T S +T + IT + + SS I S
Sbjct: 1040 SSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITS 1094
Score = 25.4 bits (53), Expect = 8.7
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = -3
Query: 500 ASTPTTFSNIVNVWTITLQECIFC*KWKFTFSKCFSTVSTITPACSIFSSARIVS 336
+STP T S +VN T + T S +T + IT + + SS I S
Sbjct: 1436 SSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITS 1490
Score = 25.4 bits (53), Expect = 8.7
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = -3
Query: 500 ASTPTTFSNIVNVWTITLQECIFC*KWKFTFSKCFSTVSTITPACSIFSSARIVS 336
+STP T S +VN T + T S +T + IT + + SS I S
Sbjct: 1556 SSTPITSSTVVNTSTPITSSSVVNSSTPITSSTALNTSTPITSSSVLNSSTPITS 1610
Score = 25.4 bits (53), Expect = 8.7
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = -3
Query: 500 ASTPTTFSNIVNVWTITLQECIFC*KWKFTFSKCFSTVSTITPACSIFSSARIVS 336
+STP T S +VN T + T S +T + IT + + SS I S
Sbjct: 1664 SSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITS 1718
Score = 25.4 bits (53), Expect = 8.7
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = -3
Query: 500 ASTPTTFSNIVNVWTITLQECIFC*KWKFTFSKCFSTVSTITPACSIFSSARIVS 336
+STP T S +VN T + T S +T + IT + + SS I S
Sbjct: 1820 SSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITS 1874
Score = 25.4 bits (53), Expect = 8.7
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = -3
Query: 500 ASTPTTFSNIVNVWTITLQECIFC*KWKFTFSKCFSTVSTITPACSIFSSARIVS 336
+STP T S +VN T + T S +T + IT + + SS I S
Sbjct: 2012 SSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITS 2066
Score = 25.4 bits (53), Expect = 8.7
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = -3
Query: 500 ASTPTTFSNIVNVWTITLQECIFC*KWKFTFSKCFSTVSTITPACSIFSSARIVS 336
+STP T S +VN T + T S +T + IT + + SS I S
Sbjct: 2276 SSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITS 2330
Score = 25.4 bits (53), Expect = 8.7
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = -3
Query: 500 ASTPTTFSNIVNVWTITLQECIFC*KWKFTFSKCFSTVSTITPACSIFSSARIVS 336
+STP T S +VN T + T S +T + IT + ++ +S I S
Sbjct: 2324 SSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTALNTSTSITS 2378
Score = 25.4 bits (53), Expect = 8.7
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = -3
Query: 500 ASTPTTFSNIVNVWTITLQECIFC*KWKFTFSKCFSTVSTITPACSIFSSARIVS 336
+STP T S +VN T + T S +T + IT + + SS I S
Sbjct: 2588 SSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITS 2642
Score = 25.4 bits (53), Expect = 8.7
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = -3
Query: 500 ASTPTTFSNIVNVWTITLQECIFC*KWKFTFSKCFSTVSTITPACSIFSSARIVS 336
+STP T S +VN T + T S +T + IT + + SS I S
Sbjct: 2660 SSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITS 2714
Score = 25.4 bits (53), Expect = 8.7
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = -3
Query: 500 ASTPTTFSNIVNVWTITLQECIFC*KWKFTFSKCFSTVSTITPACSIFSSARIVS 336
+STP T S +VN T + T S +T + IT + + SS I S
Sbjct: 2684 SSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITS 2738
Score = 25.4 bits (53), Expect = 8.7
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = -3
Query: 500 ASTPTTFSNIVNVWTITLQECIFC*KWKFTFSKCFSTVSTITPACSIFSSARIVS 336
+STP T S +VN T + T S +T + IT + + SS I S
Sbjct: 2888 SSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITS 2942
Score = 25.4 bits (53), Expect = 8.7
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = -3
Query: 500 ASTPTTFSNIVNVWTITLQECIFC*KWKFTFSKCFSTVSTITPACSIFSSARIVS 336
+STP T S +VN T + T S +T + IT + + SS I S
Sbjct: 2912 SSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITS 2966
Score = 25.4 bits (53), Expect = 8.7
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = -3
Query: 500 ASTPTTFSNIVNVWTITLQECIFC*KWKFTFSKCFSTVSTITPACSIFSSARIVS 336
+STP T S +VN T + T S +T + IT + + SS I S
Sbjct: 2984 SSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITS 3038
Score = 25.4 bits (53), Expect = 8.7
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = -3
Query: 500 ASTPTTFSNIVNVWTITLQECIFC*KWKFTFSKCFSTVSTITPACSIFSSARIVS 336
+STP T S +VN T + T S +T + IT + + SS I S
Sbjct: 3008 SSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSTVLNSSTPITS 3062
Score = 25.4 bits (53), Expect = 8.7
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = -3
Query: 500 ASTPTTFSNIVNVWTITLQECIFC*KWKFTFSKCFSTVSTITPACSIFSSARIVS 336
+STP T S +VN T + T S +T + IT + + SS I S
Sbjct: 3248 SSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITS 3302
Score = 25.4 bits (53), Expect = 8.7
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = -3
Query: 500 ASTPTTFSNIVNVWTITLQECIFC*KWKFTFSKCFSTVSTITPACSIFSSARIVS 336
+STP T S +VN T + T S +T + IT + + SS I S
Sbjct: 3272 SSTPITSSTVVNTSTPITSSTVVNSSTPITSSTTLNTSTPITSSSVLNSSTAITS 3326
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,290,975
Number of Sequences: 5004
Number of extensions: 73626
Number of successful extensions: 236
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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