Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0553
         (751 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23515-14|AAN65299.1|  285|Caenorhabditis elegans Hypothetical p...    42   5e-04
U23515-13|AAK21453.1|  823|Caenorhabditis elegans Hypothetical p...    42   5e-04
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    32   0.50 
Z81109-5|CAB03251.1|  588|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z79598-4|CAB01868.2|  745|Caenorhabditis elegans Hypothetical pr...    28   6.2  

>U23515-14|AAN65299.1|  285|Caenorhabditis elegans Hypothetical
           protein R144.2b protein.
          Length = 285

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 20/44 (45%), Positives = 31/44 (70%)
 Frame = +1

Query: 274 SEEYASSLADLTVNSKPLINMLTILAEENIEHAGVIVETVEKHL 405
           + +Y  +LA+L  N+K  IN+LTILA++  + A  IVE +E+HL
Sbjct: 8   ARDYRETLAELRNNNKTQINLLTILADDFKKAAPQIVEVIERHL 51


>U23515-13|AAK21453.1|  823|Caenorhabditis elegans Hypothetical
           protein R144.2a protein.
          Length = 823

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 20/44 (45%), Positives = 31/44 (70%)
 Frame = +1

Query: 274 SEEYASSLADLTVNSKPLINMLTILAEENIEHAGVIVETVEKHL 405
           + +Y  +LA+L  N+K  IN+LTILA++  + A  IVE +E+HL
Sbjct: 8   ARDYRETLAELRNNNKTQINLLTILADDFKKAAPQIVEVIERHL 51


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
            lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 16/56 (28%), Positives = 23/56 (41%)
 Frame = -1

Query: 298  PNWTHIPRRFLST**RPPTMACQTRTFSINCTSVVKYNTNCSTIKHCNVSHGTFLD 131
            PNW H   R L T   P    C  R     C   V+ +  C+    C +++GT  +
Sbjct: 1882 PNWCHNGGRCLDTPGYPGKCKCLPRFAGPRCDVPVQCDDYCTNNSKCTITNGTHFE 1937


>Z81109-5|CAB03251.1|  588|Caenorhabditis elegans Hypothetical
           protein R10D12.8 protein.
          Length = 588

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -2

Query: 606 KISRILIGRCL-LVFNWLQTRFDET*QVSPFLITLVCVNTDH 484
           K+ +I +G  L  +FN+ Q++F E   +S  ++ + C NT H
Sbjct: 316 KLFKIYLGHGLHCIFNFYQSKFREQSYLSTAIVLIGCFNTFH 357


>Z79598-4|CAB01868.2|  745|Caenorhabditis elegans Hypothetical
           protein C44H4.4 protein.
          Length = 745

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +3

Query: 48  RLLSITEKVCSALNKITRQIGVLFVYC--VSKNVPWLTLQCFIVEQFVLYLTTDVQL 212
           + + I E V + + ++   + +   +C  V+ NVPW  L+   ++ F+  +  DV+L
Sbjct: 37  QFIEINEDVLTEILELPSWLKIKRAFCTGVAVNVPWTKLKTCPIQIFIDEINVDVEL 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,155,996
Number of Sequences: 27780
Number of extensions: 412118
Number of successful extensions: 1011
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)