BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0553 (751 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U23515-14|AAN65299.1| 285|Caenorhabditis elegans Hypothetical p... 42 5e-04 U23515-13|AAK21453.1| 823|Caenorhabditis elegans Hypothetical p... 42 5e-04 AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l... 32 0.50 Z81109-5|CAB03251.1| 588|Caenorhabditis elegans Hypothetical pr... 29 3.5 Z79598-4|CAB01868.2| 745|Caenorhabditis elegans Hypothetical pr... 28 6.2 >U23515-14|AAN65299.1| 285|Caenorhabditis elegans Hypothetical protein R144.2b protein. Length = 285 Score = 41.9 bits (94), Expect = 5e-04 Identities = 20/44 (45%), Positives = 31/44 (70%) Frame = +1 Query: 274 SEEYASSLADLTVNSKPLINMLTILAEENIEHAGVIVETVEKHL 405 + +Y +LA+L N+K IN+LTILA++ + A IVE +E+HL Sbjct: 8 ARDYRETLAELRNNNKTQINLLTILADDFKKAAPQIVEVIERHL 51 >U23515-13|AAK21453.1| 823|Caenorhabditis elegans Hypothetical protein R144.2a protein. Length = 823 Score = 41.9 bits (94), Expect = 5e-04 Identities = 20/44 (45%), Positives = 31/44 (70%) Frame = +1 Query: 274 SEEYASSLADLTVNSKPLINMLTILAEENIEHAGVIVETVEKHL 405 + +Y +LA+L N+K IN+LTILA++ + A IVE +E+HL Sbjct: 8 ARDYRETLAELRNNNKTQINLLTILADDFKKAAPQIVEVIERHL 51 >AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density lipoprotein receptorrelated protein 2 protein. Length = 2192 Score = 31.9 bits (69), Expect = 0.50 Identities = 16/56 (28%), Positives = 23/56 (41%) Frame = -1 Query: 298 PNWTHIPRRFLST**RPPTMACQTRTFSINCTSVVKYNTNCSTIKHCNVSHGTFLD 131 PNW H R L T P C R C V+ + C+ C +++GT + Sbjct: 1882 PNWCHNGGRCLDTPGYPGKCKCLPRFAGPRCDVPVQCDDYCTNNSKCTITNGTHFE 1937 >Z81109-5|CAB03251.1| 588|Caenorhabditis elegans Hypothetical protein R10D12.8 protein. Length = 588 Score = 29.1 bits (62), Expect = 3.5 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%) Frame = -2 Query: 606 KISRILIGRCL-LVFNWLQTRFDET*QVSPFLITLVCVNTDH 484 K+ +I +G L +FN+ Q++F E +S ++ + C NT H Sbjct: 316 KLFKIYLGHGLHCIFNFYQSKFREQSYLSTAIVLIGCFNTFH 357 >Z79598-4|CAB01868.2| 745|Caenorhabditis elegans Hypothetical protein C44H4.4 protein. Length = 745 Score = 28.3 bits (60), Expect = 6.2 Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 2/57 (3%) Frame = +3 Query: 48 RLLSITEKVCSALNKITRQIGVLFVYC--VSKNVPWLTLQCFIVEQFVLYLTTDVQL 212 + + I E V + + ++ + + +C V+ NVPW L+ ++ F+ + DV+L Sbjct: 37 QFIEINEDVLTEILELPSWLKIKRAFCTGVAVNVPWTKLKTCPIQIFIDEINVDVEL 93 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,155,996 Number of Sequences: 27780 Number of extensions: 412118 Number of successful extensions: 1011 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 955 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1011 length of database: 12,740,198 effective HSP length: 80 effective length of database: 10,517,798 effective search space used: 1777507862 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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