Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0553
         (751 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   3.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.1  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   5.3  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    22   5.3  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   9.3  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 250 PPTMACQTRTFSINCTSVVKYNTNCST 170
           PPT      + S++C   VK+   C+T
Sbjct: 145 PPTTCLVFSSGSVSCVPSVKHVAKCAT 171


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 317 LLTVRSAKLDAYSSEISFDMMTAAHDG 237
           L +   ++LD YSS +S   + A H G
Sbjct: 659 LASANISQLDPYSSLLSITNLAAEHSG 685


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 429 LKMEIHLLQMLFHGFNDNPSVFDILFRKN 343
           L M   +L +LFH     P++F  L R+N
Sbjct: 314 LYMVTVILGLLFHALITLPTIFWFLTRQN 342


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 306 DRQQQAIDKYAHNSCGREYRTR 371
           D+ +Q+   Y    C R YRT+
Sbjct: 27  DKHEQSDTLYVCEFCNRRYRTK 48


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = -3

Query: 422 WKFTFSKCFSTVSTITPA 369
           W+ T  KCF + + + P+
Sbjct: 371 WRLTCRKCFKSRTNLDPS 388


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,459
Number of Sequences: 438
Number of extensions: 4803
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)