Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0553
(751 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g36485.1 68415.m04478 expressed protein 50 2e-06
At4g04885.1 68417.m00711 pre-mRNA cleavage complex-related conta... 37 0.016
At5g23140.1 68418.m02706 ATP-dependent Clp protease proteolytic ... 32 0.35
At5g13740.1 68418.m01599 sugar transporter family protein contai... 31 1.1
At5g24280.1 68418.m02856 expressed protein ; expression supporte... 29 3.3
At1g34110.1 68414.m04230 leucine-rich repeat transmembrane prote... 29 3.3
At3g59030.1 68416.m06579 transparent testa 12 protein (TT12) / m... 29 4.4
At1g09130.1 68414.m01017 ATP-dependent Clp protease proteolytic ... 29 4.4
>At2g36485.1 68415.m04478 expressed protein
Length = 158
Score = 49.6 bits (113), Expect = 2e-06
Identities = 23/53 (43%), Positives = 35/53 (66%)
Frame = +1
Query: 268 EISEEYASSLADLTVNSKPLINMLTILAEENIEHAGVIVETVEKHLEKVNFHF 426
E+ +Y S+LA+LT NSKP+I LTI+A EN+ A +V + ++ +VN F
Sbjct: 88 ELVNQYKSALAELTFNSKPIITNLTIIAGENVHAAKAVVTAICNNILEVNTQF 140
>At4g04885.1 68417.m00711 pre-mRNA cleavage complex-related contains
weak similarity to Pre-mRNA cleavage complex II protein
Pcf11 (Fragment) (Swiss-Prot:O94913) [Homo sapiens]
Length = 808
Score = 36.7 bits (81), Expect = 0.016
Identities = 19/42 (45%), Positives = 24/42 (57%)
Frame = +1
Query: 268 EISEEYASSLADLTVNSKPLINMLTILAEENIEHAGVIVETV 393
EI + Y L +LT NSKP+I LTI+A E EH I +
Sbjct: 64 EIVQLYEVVLGELTFNSKPIITDLTIIAGEQREHGEGIANAI 105
>At5g23140.1 68418.m02706 ATP-dependent Clp protease proteolytic
subunit, putative nClpP2/nClpP7; similar to SP:Q9X6W8
ATP-dependent Clp protease proteolytic subunit (EC
3.4.21.92) (Endopeptidase Clp) from [Azospirillum
brasilense]
Length = 241
Score = 32.3 bits (70), Expect = 0.35
Identities = 13/57 (22%), Positives = 32/57 (56%)
Frame = +1
Query: 250 AVIMSKEISEEYASSLADLTVNSKPLINMLTILAEENIEHAGVIVETVEKHLEKVNF 420
A +M + S Y+ D+T+++K ++ + L E ++H G ++ V ++++ +F
Sbjct: 147 ATVMIHQPSGGYSGQAKDITIHTKQIVRVWDALNELYVKHTGQPLDVVANNMDRDHF 203
>At5g13740.1 68418.m01599 sugar transporter family protein contains
Pfam profile PF00083: major facilitator superfamily
protein
Length = 486
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = -3
Query: 416 FTFSKCFSTVSTITPACSIFSSARIVSIFINGLLLTVRSAKLDAYSSEISFDMMTAA-HD 240
F+ F P +I + A +V++ + T+ + KLD+ S + S+D++ AA H+
Sbjct: 200 FSQESLFGRFRYALPCFTISAFALLVTVLCCFIPETLHNHKLDSLSHDDSYDILEAASHE 259
Query: 239 GMPNT 225
P+T
Sbjct: 260 SSPST 264
>At5g24280.1 68418.m02856 expressed protein ; expression supported by
MPSS
Length = 1634
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/70 (22%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = -2
Query: 456 NNSSRVYFLLKMEIHLLQMLFHGFNDNPSV-FDILFRKNCEHIYQWLAVDGQIRQTGRIF 280
+N ++++ +K+ I +Q LF G+N++ + D+L + I W+ ++ ++ G I
Sbjct: 1029 SNRNQLFLRIKLTIIFMQ-LFDGYNNHVAEGTDVLIHIDGYRIEDWMGINRKVDSRGCIN 1087
Query: 279 LGDFFRHDDG 250
L + +G
Sbjct: 1088 LSGILKVTEG 1097
>At1g34110.1 68414.m04230 leucine-rich repeat transmembrane protein
kinase, putative contains similarity to receptor protein
kinase-like protein GI:10177178 from [Arabidopsis
thaliana]
Length = 1045
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = -3
Query: 587 LGDACSCLTGYKRGLTKLNRCHHSLSHWCASTPTTFSNIVNVWTITLQE 441
LG G+ + LT L LS S P+TF N+VN+ T+ L +
Sbjct: 181 LGGPIPAQLGFLKNLTTLGFAASGLS---GSIPSTFGNLVNLQTLALYD 226
>At3g59030.1 68416.m06579 transparent testa 12 protein (TT12) /
multidrug transporter-like protein similar to ripening
regulated protein DDTFR18 [Lycopersicon esculentum]
GI:12231296, putative multidrug efflux protein NorM -
Vibrio parahaemolyticus, EMBL:AB010463; contains Pfam
profile PF01554: Uncharacterized membrane protein
family; identical to cDNA multidrug transporter-like
protein (tt12) GI:13624642, SP|Q9LYT3 TRANSPARENT TESTA
12 protein {Arabidopsis thaliana}, multidrug
transporter-like protein [Arabidopsis thaliana]
GI:13624643
Length = 507
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -3
Query: 473 IVNVWTITLQE--CIFC*KWKFTFSKCFSTVSTITPACSIFSSARIVSIFINGL 318
+VN+ T+ + C+ ++ SK F++ + + A S VSIF+NG+
Sbjct: 357 VVNITTVLISSVLCVIVLVFRVGLSKAFTSDAEVIAAVSDLFPLLAVSIFLNGI 410
>At1g09130.1 68414.m01017 ATP-dependent Clp protease proteolytic
subunit, putative similar to nClpP5 GI:5360595 from
[Arabidopsis thaliana]
Length = 330
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +1
Query: 229 FGMPSWAAVIMSKEISEEYASSLADLTVNSKPLINMLTILAEENIEHAGVIVETV 393
F MP A+I + +D+ + +K +I IL E +H G VETV
Sbjct: 224 FMMPHAKAMIQQPRVPSSGLMPASDVLIRAKEVITNRDILVELLSKHTGNSVETV 278
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,795,920
Number of Sequences: 28952
Number of extensions: 371587
Number of successful extensions: 871
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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