Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0552
(650 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g36070.1 68415.m04429 mitochondrial import inner membrane tra... 42 3e-04
At2g36640.1 68415.m04494 late embryogenesis abundant protein (EC... 39 0.003
At4g34430.4 68417.m04893 DNA-binding family protein contains Pfa... 33 0.12
At4g34430.3 68417.m04892 DNA-binding family protein contains Pfa... 33 0.12
At4g34430.2 68417.m04891 DNA-binding family protein contains Pfa... 33 0.12
At4g34430.1 68417.m04890 DNA-binding family protein contains Pfa... 33 0.12
At1g09080.1 68414.m01013 luminal binding protein 3 (BiP-3) (BP3)... 33 0.22
At5g20490.1 68418.m02435 myosin, putative similar to myosin (GI:... 32 0.29
At3g15670.1 68416.m01986 late embryogenesis abundant protein, pu... 32 0.29
At1g01950.1 68414.m00113 armadillo/beta-catenin repeat family pr... 32 0.29
At2g20510.1 68415.m02395 mitochondrial import inner membrane tra... 31 0.50
At3g09980.1 68416.m01198 expressed protein contains Pfam profile... 31 0.66
At2g35070.1 68415.m04302 expressed protein 31 0.66
At2g19410.1 68415.m02264 protein kinase family protein contains ... 31 0.88
At4g27595.1 68417.m03964 protein transport protein-related low s... 30 1.2
At5g46070.1 68418.m05665 guanylate-binding family protein contai... 30 1.5
At5g20440.1 68418.m02430 mob1/phocein family protein contains Pf... 30 1.5
At1g72100.1 68414.m08334 late embryogenesis abundant domain-cont... 30 1.5
At3g50370.1 68416.m05508 expressed protein 29 2.0
At2g48160.1 68415.m06031 PWWP domain-containing protein 29 2.7
At2g32240.1 68415.m03940 expressed protein contains Pfam profile... 29 2.7
At2g27170.1 68415.m06029 structural maintenance of chromosomes (... 29 2.7
At1g79830.1 68414.m09326 expressed protein weak similarity to TA... 29 2.7
At1g70920.1 68414.m08183 homeobox-leucine zipper protein, putati... 29 2.7
At4g32160.1 68417.m04574 phox (PX) domain-containing protein con... 29 3.5
At4g21020.1 68417.m03041 late embryogenesis abundant domain-cont... 28 4.7
At3g58840.1 68416.m06558 expressed protein 28 4.7
At3g55050.2 68416.m06114 serine/threonine protein phosphatase 2C... 28 4.7
At3g55050.1 68416.m06113 serine/threonine protein phosphatase 2C... 28 4.7
At3g12360.1 68416.m01541 ankyrin repeat family protein contains ... 28 4.7
At2g26570.1 68415.m03187 expressed protein contains Pfam profile... 28 4.7
At1g62380.1 68414.m07038 1-aminocyclopropane-1-carboxylate oxida... 28 4.7
At1g45545.1 68414.m05199 hypothetical protein contains Pfam prof... 28 4.7
At5g61920.1 68418.m07773 hypothetical protein 28 6.2
At5g55140.1 68418.m06875 ribosomal protein L30 family protein co... 28 6.2
At5g07780.1 68418.m00890 formin homology 2 domain-containing pro... 28 6.2
At3g49170.1 68416.m05374 pentatricopeptide (PPR) repeat-containi... 28 6.2
At3g09550.1 68416.m01134 ankyrin repeat family protein contains ... 28 6.2
At2g36410.2 68415.m04470 expressed protein contains Pfam profile... 28 6.2
At2g36410.1 68415.m04469 expressed protein contains Pfam profile... 28 6.2
At2g19950.1 68415.m02332 expressed protein contains 2 transmembr... 28 6.2
At5g40450.1 68418.m04905 expressed protein 27 8.2
At3g59080.1 68416.m06586 aspartyl protease family protein contai... 27 8.2
At3g50100.1 68416.m05477 exonuclease family protein contains exo... 27 8.2
At3g46990.1 68416.m05103 hypothetical protein contains Pfam prof... 27 8.2
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu... 27 8.2
At1g19700.1 68414.m02457 homeobox-leucine zipper family protein ... 27 8.2
At1g01840.1 68414.m00103 expressed protein 27 8.2
>At2g36070.1 68415.m04429 mitochondrial import inner membrane
translocase subunit TIM44, putative contains similarity
to Swiss-Prot:O35857 import inner membrane translocase
subunit TIM44, mitochondrial precursor [Mus musculus];
contains Pfam domian PF04280: Mitochondrial import inner
membrane, translocase subunit TIM44
Length = 469
Score = 42.3 bits (95), Expect = 3e-04
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Frame = +1
Query: 187 LAHQ--VKGRTGLQQGLEGRLRVRAQQLNAFAKSLQGALGDANGKAKEALEQSRQNIERT 360
L HQ V R GL QG R + F+K ++G D+N + ++ +++ ++
Sbjct: 21 LVHQRRVGARLGLLQGNGFASHRRFSVFSEFSKKIRGE-ADSNPEFQKTVKEFKER---- 75
Query: 361 AEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSSNVQE 498
AEEL+ D++ EKL Q E++ +AKKVSS+V++
Sbjct: 76 AEELQGVKEDLKVRTKQTTEKLYKQGQGVWTEAESVAKKVSSSVKD 121
>At2g36640.1 68415.m04494 late embryogenesis abundant protein
(ECP63) / LEA protein nearly identical to to LEA protein
in group 3 [Arabidopsis thaliana] GI:1526424; contains
Pfam profile PF02987: Late embryogenesis abundant
protein
Length = 448
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/76 (23%), Positives = 39/76 (51%)
Frame = +1
Query: 283 LQGALGDANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQ 462
L G +A GKA E + +++N+E+ E R+ ++ L+E+ A Q Q+++
Sbjct: 278 LSGKTEEAKGKAVETKDTAKENMEKAGEVTRQKMEEMRLEGKELKEEAGAKAQEASQKTR 337
Query: 463 KLAKKVSSNVQETNEN 510
+ + + +ET ++
Sbjct: 338 ESTESGAQKAEETKDS 353
>At4g34430.4 68417.m04893 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 986
Score = 33.5 bits (73), Expect = 0.12
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +1
Query: 277 KSLQGALGDANGKAKEALEQSRQNIERTAEELRK--AHPDVEKNATALREKLQAAVQNTV 450
K LQ L D N + E + S+ + ++A + + A DVE T EK V TV
Sbjct: 706 KELQEPLKDGNKLSSENKDASQSTVSQSAADASQPEASRDVEMKDTLQSEKDPEDVVKTV 765
Query: 451 QESQKLAKKVSSN 489
E +LAK+ +N
Sbjct: 766 GEKVQLAKEEGAN 778
>At4g34430.3 68417.m04892 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 983
Score = 33.5 bits (73), Expect = 0.12
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +1
Query: 277 KSLQGALGDANGKAKEALEQSRQNIERTAEELRK--AHPDVEKNATALREKLQAAVQNTV 450
K LQ L D N + E + S+ + ++A + + A DVE T EK V TV
Sbjct: 704 KELQEPLKDGNKLSSENKDASQSTVSQSAADASQPEASRDVEMKDTLQSEKDPEDVVKTV 763
Query: 451 QESQKLAKKVSSN 489
E +LAK+ +N
Sbjct: 764 GEKVQLAKEEGAN 776
>At4g34430.2 68417.m04891 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 985
Score = 33.5 bits (73), Expect = 0.12
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +1
Query: 277 KSLQGALGDANGKAKEALEQSRQNIERTAEELRK--AHPDVEKNATALREKLQAAVQNTV 450
K LQ L D N + E + S+ + ++A + + A DVE T EK V TV
Sbjct: 706 KELQEPLKDGNKLSSENKDASQSTVSQSAADASQPEASRDVEMKDTLQSEKDPEDVVKTV 765
Query: 451 QESQKLAKKVSSN 489
E +LAK+ +N
Sbjct: 766 GEKVQLAKEEGAN 778
>At4g34430.1 68417.m04890 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 985
Score = 33.5 bits (73), Expect = 0.12
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +1
Query: 277 KSLQGALGDANGKAKEALEQSRQNIERTAEELRK--AHPDVEKNATALREKLQAAVQNTV 450
K LQ L D N + E + S+ + ++A + + A DVE T EK V TV
Sbjct: 706 KELQEPLKDGNKLSSENKDASQSTVSQSAADASQPEASRDVEMKDTLQSEKDPEDVVKTV 765
Query: 451 QESQKLAKKVSSN 489
E +LAK+ +N
Sbjct: 766 GEKVQLAKEEGAN 778
>At1g09080.1 68414.m01013 luminal binding protein 3 (BiP-3) (BP3)
Similar to Arabidopsis luminal binding protein
(gb|D89342); contains Pfam domain PF00012: dnaK protein
Length = 678
Score = 32.7 bits (71), Expect = 0.22
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Frame = +1
Query: 235 GRLRVRAQQLNAFAKSLQGALGDANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATAL 414
G L+V+A+ + AK+ Q ++ N K + E+ + I R AEE + +++ A
Sbjct: 529 GILQVKAE--DKVAKTSQ-SITITNDKGRLTEEEIEEMI-REAEEFAEEDKIMKEKIDA- 583
Query: 415 REKLQAAVQN---TVQESQKLAKKVSSNVQETNE 507
R KL+ V N TV + +KLAKK+S +E E
Sbjct: 584 RNKLETYVYNMKSTVADKEKLAKKISDEDKEKME 617
>At5g20490.1 68418.m02435 myosin, putative similar to myosin
(GI:433663) [Arabidopsis thaliana]; myosin-like protein
my5, common sunflower, PIR:T14279
Length = 1545
Score = 32.3 bits (70), Expect = 0.29
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Frame = +1
Query: 322 EALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQ--ES-QKLAKKVSSNV 492
EAL+ S Q + AE LRKA + E + L +L+ A + Q ES Q+L +K+S++
Sbjct: 997 EALKASLQAERQAAENLRKAFSEAEARNSELATELENATRKADQLHESVQRLEEKLSNSE 1056
Query: 493 QE 498
E
Sbjct: 1057 SE 1058
>At3g15670.1 68416.m01986 late embryogenesis abundant protein,
putative / LEA protein, putative similar to SP|P13934
Late embryogenesis abundant protein 76 (LEA 76)
{Brassica napus}; contains Pfam profile PF02987: Late
embryogenesis abundant protein
Length = 225
Score = 32.3 bits (70), Expect = 0.29
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Frame = +1
Query: 286 QGALGDANGKAKEALEQSRQNIERTAEELR-KAHPDVEKNATALREKLQAAVQNTVQESQ 462
Q G A G ++ E+ R +TA+ + KAH + + QAA Q + +Q
Sbjct: 18 QEKTGQAMGTMRDKAEEGRDKTSQTAQTAQQKAHETAQSAKDKTSQTAQAAQQKAHETAQ 77
Query: 463 KLAKKVSSNVQETNE 507
+K S Q +
Sbjct: 78 SAKEKTSQTAQTAQQ 92
Score = 29.5 bits (63), Expect = 2.0
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Frame = +1
Query: 298 GDANGKAKEALEQSRQNIERTAEELR-KAHPDVEKNATALREKLQAAVQNTVQESQKLAK 474
G+ GKA+E Q+ + AEE R K + E Q+A T Q +Q +
Sbjct: 11 GETRGKAQEKTGQAMGTMRDKAEEGRDKTSQTAQTAQQKAHETAQSAKDKTSQTAQAAQQ 70
Query: 475 KVSSNVQETNE 507
K Q E
Sbjct: 71 KAHETAQSAKE 81
>At1g01950.1 68414.m00113 armadillo/beta-catenin repeat family
protein / kinesin motor family protein similar to
kinesin-like protein GB:CAB41097 GI:5541717 from
[Arabidopsis thaliana]; contains Pfam profiles PF00225:
Kinesin motor domain, PF00514:
Armadillo/beta-catenin-like repeat
Length = 894
Score = 32.3 bits (70), Expect = 0.29
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Frame = +1
Query: 229 LEGRLRVRAQ-QLNAFAKSLQGALGDANGKAKEALEQSRQNIERTAEELRKAHPDVEKNA 405
+E L+++ + + +K L+ L + + L+ ++ER + + +VEKN
Sbjct: 402 VENMLKIKEEFDYKSLSKKLEVQLDKVIAENERQLKAFDDDVERINRQAQNRISEVEKNF 461
Query: 406 TALREKLQAAVQNTVQES-QKLAKKVSSNVQETNEN 510
EK + Q ES +KL +K+ SN Q +EN
Sbjct: 462 AEALEKEKLKCQMEYMESVKKLEEKLISN-QRNHEN 496
>At2g20510.1 68415.m02395 mitochondrial import inner membrane
translocase subunit TIM44, putative contains similarity
to Swiss-Prot:O35857 import inner membrane translocase
subunit TIM44, mitochondrial precursor [Mus musculus];
contains Pfam domian PF04280: Mitochondrial import inner
membrane, translocase subunit TIM44
Length = 472
Score = 31.5 bits (68), Expect = 0.50
Identities = 18/81 (22%), Positives = 39/81 (48%)
Frame = +1
Query: 256 QQLNAFAKSLQGALGDANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAA 435
++ + F + + G+A+ + E++ + ++ EE + D++ EKL
Sbjct: 43 RRFSVFTEFSKNIRGEAHSNPE--FERTVKELKERTEEFKGVTEDLKVRTKQTTEKLYKQ 100
Query: 436 VQNTVQESQKLAKKVSSNVQE 498
E++ AKKVSS+V++
Sbjct: 101 ADGVWTEAESAAKKVSSSVKD 121
>At3g09980.1 68416.m01198 expressed protein contains Pfam profile
PF04949: Family of unknown function (DUF662)
Length = 178
Score = 31.1 bits (67), Expect = 0.66
Identities = 21/75 (28%), Positives = 39/75 (52%)
Frame = +1
Query: 247 VRAQQLNAFAKSLQGALGDANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKL 426
V ++QL A L G++ ++ +KE E SR + R ++EK +RE++
Sbjct: 19 VHSRQLGA---QLSGSMSFSSQMSKEDEEMSRTALSA----FRAKEEEIEKKKMEIRERV 71
Query: 427 QAAVQNTVQESQKLA 471
QA + +E+++LA
Sbjct: 72 QAQLGRVEEETKRLA 86
>At2g35070.1 68415.m04302 expressed protein
Length = 158
Score = 31.1 bits (67), Expect = 0.66
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +1
Query: 208 RTGLQQGLEGRLRVRAQQLNAFAKSLQGALGDANGKAKEALEQSRQ-NIERTAEELRKAH 384
+ G+ + LE + V + Q A ++ GK K + +S + R AEE RK
Sbjct: 30 KLGMVKALEA-INVPSTQAEALTGAITSGFESVMGKVKADIAKSEEYKSTRVAEEFRKMR 88
Query: 385 PDVEK 399
D+EK
Sbjct: 89 ADIEK 93
>At2g19410.1 68415.m02264 protein kinase family protein contains
Pfam profile: PF00069 Eukaryotic protein kinase domain
Length = 801
Score = 30.7 bits (66), Expect = 0.88
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 209 AQDFSKAWKDGSESVRNSSTPSPRVSRERSETRTARPRRL 328
A DF + W ++R+ + P PR S E R+A R L
Sbjct: 190 AHDFLRDWAASFHTLRSPTLPDPRQSTEAGTRRSASAREL 229
>At4g27595.1 68417.m03964 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 1212
Score = 30.3 bits (65), Expect = 1.2
Identities = 28/72 (38%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = +1
Query: 301 DANGKAKEAL---EQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLA 471
D K KE+L E QNI + AEELR D K E+L AA ++ V++ KL
Sbjct: 647 DQLSKVKESLVDKETKLQNIIQEAEELRVKEIDYLKKI----EELSAAKESLVEKETKLL 702
Query: 472 KKVSSNVQETNE 507
S VQE E
Sbjct: 703 ----STVQEAEE 710
>At5g46070.1 68418.m05665 guanylate-binding family protein contains
Pfam domains PF02263: Guanylate-binding protein,
N-terminal domain and PF02841: Guanylate-binding protein,
C-terminal domain
Length = 1060
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +1
Query: 343 QNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAK 474
+++E+ +E RKAH + A AL +LQAA + Q+LA+
Sbjct: 876 KSLEKLLDEERKAHIAANRRAEALSLELQAAQAHVDNLQQELAQ 919
>At5g20440.1 68418.m02430 mob1/phocein family protein contains Pfam
profile: PF03637 mob1/phocein family
Length = 217
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/51 (23%), Positives = 26/51 (50%)
Frame = +1
Query: 337 SRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSSN 489
S N+ RT ++ HP+ + + +RE + + ++E+ +L + V N
Sbjct: 9 SSNNVVRTVPSKKRKHPEYKSKGSQIRELISGIRSDNLREAVRLPQGVDIN 59
>At1g72100.1 68414.m08334 late embryogenesis abundant
domain-containing protein / LEA domain-containing
protein low similarity to embryogenic gene [Betula
pendula] GI:4539485; contains Pfam profile PF02987: Late
embryogenesis abundant protein
Length = 480
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +1
Query: 313 KAKEALEQSRQNIERTAEEL-RKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSSN 489
KA +A E+ R+ E + +KAH E+ +REK Q + +S+ ++V +
Sbjct: 233 KAHDAKEKVREKAHDVKETVAQKAHESKERAKDRVREKAQELKETATHKSKNAWERVKNG 292
Query: 490 VQE 498
+E
Sbjct: 293 ARE 295
>At3g50370.1 68416.m05508 expressed protein
Length = 2179
Score = 29.5 bits (63), Expect = 2.0
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = +1
Query: 331 EQSRQNIERTAEELRKAHPDVEKNATALRE--KLQAAVQNTVQESQKLAKK 477
EQ R R AEELRK+ + EK+ + E + QAA Q ++ +K++++
Sbjct: 531 EQERLEATRRAEELRKSKEE-EKHRLFMEEERRKQAAKQKLLELEEKISRR 580
>At2g48160.1 68415.m06031 PWWP domain-containing protein
Length = 1366
Score = 29.1 bits (62), Expect = 2.7
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = +1
Query: 4 PVRISSALSLSTAHH-GRQVR--SSLRLHRSGPRSDGATRRSRLLQGHRTPHQGVP 162
P+R++ LS ST H+ G + S ++L S P++DG+ + R H PH P
Sbjct: 1184 PLRMNPPLSGSTMHYQGPESSYISGVQLTNSIPQADGSNFQHRPYPSHPHPHPPPP 1239
>At2g32240.1 68415.m03940 expressed protein contains Pfam profile:
PF04508 viral A-type inclusion protein repeat
Length = 775
Score = 29.1 bits (62), Expect = 2.7
Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Frame = +1
Query: 217 LQQGLEGRLRVRAQ-QLNAFAKSLQGALGDANGKAKEALEQSRQNIERTAEELRKAHPDV 393
LQ E L QL + L+G +G + + + AL++ + IER ++
Sbjct: 328 LQSSSESELLAETNNQLKIKIQELEGLIGSGSVEKETALKRLEEAIERFNQK-------- 379
Query: 394 EKNATALREKLQAAVQNTVQESQKLAKKVSSNVQETNE 507
E ++ L EKL+ +N ++E +KLA + +S V +T +
Sbjct: 380 ETESSDLVEKLKTH-ENQIEEYKKLAHE-ASGVADTRK 415
>At2g27170.1 68415.m06029 structural maintenance of chromosomes
(SMC) family protein similar to basement
membrane-associated chondroitin proteoglycan Bamacan
[Rattus norvegicus] GI:1785540; contains Pfam profile
PF02463: RecF/RecN/SMC N terminal domain. No suitalble
start codon was identified.
Length = 1207
Score = 29.1 bits (62), Expect = 2.7
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Frame = +1
Query: 256 QQLNAFAKSLQGALGDAN-GKAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQA 432
QQL+ KSL+ + D A+E LEQ + +EE K + VEK A + L
Sbjct: 214 QQLDKQRKSLEYTIYDKELHDAREKLEQVEVARTKASEESTKMYDRVEK-AQDDSKSLDE 272
Query: 433 AVQNTVQESQKLAK-KVSSNVQET 501
+++ +E Q L K K + Q+T
Sbjct: 273 SLKELTKELQTLYKEKETVEAQQT 296
>At1g79830.1 68414.m09326 expressed protein weak similarity to TATA
element modulatory factor (TMF) (Swiss-Prot:P82094)
[Homo sapiens]
Length = 927
Score = 29.1 bits (62), Expect = 2.7
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Frame = +1
Query: 253 AQQLNAFAKSLQGALGDANGKAKEALEQ---SRQNIERTAEELRKAHPDVEK----NATA 411
A L A L+ + + K K+ L++ + I++ E + + D+E+ N++A
Sbjct: 722 ADTLEGRANQLEVEIRELRRKHKQELQEVLLHNELIQKDLEREKASRLDLERTARINSSA 781
Query: 412 LREKLQAAVQNTVQESQKLAKKVS 483
+ E+L A QN+ E+ K ++K S
Sbjct: 782 VSEQLPIARQNSAFENDKFSEKRS 805
>At1g70920.1 68414.m08183 homeobox-leucine zipper protein, putative
/ HD-ZIP transcription factor, putative similar to
homeodomain leucine zipper protein GI:5006851 from
[Oryza sativa]
Length = 206
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 554 HPGGDQEDPGGRQRQAVSVDIELSHLINISFI 649
H D + GGR+R+ + + E SHL+ SFI
Sbjct: 55 HVNEDDSNSGGRRRKKLRLTKEQSHLLEESFI 86
>At4g32160.1 68417.m04574 phox (PX) domain-containing protein
contains Pfam profile PF00787: PX domain
Length = 723
Score = 28.7 bits (61), Expect = 3.5
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
Frame = +1
Query: 262 LNAFAKSLQGALGDANGKAKEALEQS------RQN-IERTAEELRKAHPDVEKNATALRE 420
LN L+G L ++KE LEQ+ R N ++ EELR+ ++E + +
Sbjct: 428 LNKKVNDLEGELETTKQRSKENLEQAIMSERERFNQMQWDMEELRQKSYEMEMKLKSRED 487
Query: 421 ---KLQAAVQNTVQESQKLAKKVSSNVQETNE 507
+ VQ+T+ E L+K++ + Q+ +
Sbjct: 488 GSSHAEPTVQSTISEKHVLSKELDARKQQLED 519
>At4g21020.1 68417.m03041 late embryogenesis abundant
domain-containing protein / LEA domain-containing
protein low similarity to SP|P23283 Desiccation-related
protein {Craterostigma plantagineum}; contains Pfam
profile PF02987: Late embryogenesis abundant protein
Length = 266
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/69 (21%), Positives = 33/69 (47%)
Frame = +1
Query: 304 ANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVS 483
A A A E+++ ERT +++ + A +EK + ++T+ +++ A+
Sbjct: 114 AKDTAYNAKEKAKDYAERTKDKVNEGAYKAADKAEDTKEKAKDYAEDTMDNAKEKARHAK 173
Query: 484 SNVQETNEN 510
V+E E+
Sbjct: 174 EKVKEYGED 182
>At3g58840.1 68416.m06558 expressed protein
Length = 318
Score = 28.3 bits (60), Expect = 4.7
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = +1
Query: 313 KAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSS 486
KA + + + E+ AE LRK +VEK L K+ V+E ++ +KK+ S
Sbjct: 128 KALAEIVEKLEGCEKEAEGLRKDRAEVEKRVRDLERKIGVL---EVREMEEKSKKLRS 182
>At3g55050.2 68416.m06114 serine/threonine protein phosphatase 2C
(PP2C6) identical to Ser/Thr protein phosphatase 2C
(PP2C6) (GI:15020818) [Arabidopsis thaliana]; similar to
protein phosphatase 2C (GI:3608412) [Mesembryanthemum
crystallinum]; contains Pfam PF00481 : Protein
phosphatase 2C domain; contains TIGRFAM TIGR01573 :
CRISPR-associated protein Cas2
Length = 384
Score = 28.3 bits (60), Expect = 4.7
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +1
Query: 313 KAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKL 468
KA + + +IE EELR HPD + N L+ K+ V+ +Q S+ +
Sbjct: 188 KAVQLSTEHNASIESVREELRLLHPD-DPNIVVLKHKVW-RVKGIIQVSRSI 237
>At3g55050.1 68416.m06113 serine/threonine protein phosphatase 2C
(PP2C6) identical to Ser/Thr protein phosphatase 2C
(PP2C6) (GI:15020818) [Arabidopsis thaliana]; similar to
protein phosphatase 2C (GI:3608412) [Mesembryanthemum
crystallinum]; contains Pfam PF00481 : Protein
phosphatase 2C domain; contains TIGRFAM TIGR01573 :
CRISPR-associated protein Cas2
Length = 384
Score = 28.3 bits (60), Expect = 4.7
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +1
Query: 313 KAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKL 468
KA + + +IE EELR HPD + N L+ K+ V+ +Q S+ +
Sbjct: 188 KAVQLSTEHNASIESVREELRLLHPD-DPNIVVLKHKVW-RVKGIIQVSRSI 237
>At3g12360.1 68416.m01541 ankyrin repeat family protein contains
ankyrin repeat domains, Pfam:PF00023
Length = 590
Score = 28.3 bits (60), Expect = 4.7
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +1
Query: 247 VRAQQLNAFAKSLQGALGDANGKAKEALEQSRQ---NIERTAEELRKAHPDVEKNAT 408
+RA +LN L+ + LEQ+++ N+ ++ELRK H + NAT
Sbjct: 363 LRANELNQPRDELRSTVTQIKNDVHIQLEQTKRTNKNVHNISKELRKLHREGINNAT 419
>At2g26570.1 68415.m03187 expressed protein contains Pfam profile
PF05701: Plant protein of unknown function (DUF827);
weak similarity to merozoite surface protein 3 alpha
(GI:27596802) [Plasmodium vivax]
Length = 807
Score = 28.3 bits (60), Expect = 4.7
Identities = 20/67 (29%), Positives = 29/67 (43%)
Frame = +1
Query: 274 AKSLQGALGDANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQ 453
AKSL + KAKE EQ++ L A ++E A E+L A ++
Sbjct: 563 AKSLAEVAREELRKAKEEAEQAKAGASTMESRLFAAQKEIE--AAKASERLALAAIKALE 620
Query: 454 ESQKLAK 474
ES+ K
Sbjct: 621 ESESTLK 627
>At1g62380.1 68414.m07038 1-aminocyclopropane-1-carboxylate oxidase,
putative / ACC oxidase, putative nearly identical to ACC
oxidase (ACC ox1) GI:587086 from [Brassica oleracea]
Length = 320
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 122 DFFKDIEHHTKEFHKTL-EQQFNSLTKSKDAQDFSKAWKD 238
D IE TK+ +KT EQ+FN + KSK + +D
Sbjct: 47 DLMDKIEKMTKDHYKTCQEQKFNDMLKSKGLDNLETEVED 86
>At1g45545.1 68414.m05199 hypothetical protein contains Pfam profile
PF05701: Plant protein of unknown function (DUF827)
Length = 752
Score = 28.3 bits (60), Expect = 4.7
Identities = 18/63 (28%), Positives = 33/63 (52%)
Frame = +1
Query: 274 AKSLQGALGDANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQ 453
AKSL A + KAKE ++++ + +L ++ ++E A+ EKL A +Q
Sbjct: 512 AKSLAIAAREELRKAKEESDEAKTGLSAVERQLMESKKEME--ASRASEKLALAAIKALQ 569
Query: 454 ESQ 462
E++
Sbjct: 570 ETE 572
>At5g61920.1 68418.m07773 hypothetical protein
Length = 238
Score = 27.9 bits (59), Expect = 6.2
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Frame = +1
Query: 322 EALEQSRQNIERTAEELRKAHPDVEKNATALREKL------QAAVQNTVQESQKLAKKVS 483
E+LE S Q +ER EE ++ + E+ + EKL + + V+ +KL ++S
Sbjct: 170 ESLEASSQELERLKEEHQRLRKEFEEEKSGNVEKLAQLKGMERKIIGAVKAIEKLRSEIS 229
Query: 484 SNVQETNEN 510
+ + EN
Sbjct: 230 TARNKAVEN 238
>At5g55140.1 68418.m06875 ribosomal protein L30 family protein
contains similarity to 50S ribosomal protein L30
Length = 109
Score = 27.9 bits (59), Expect = 6.2
Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Frame = +1
Query: 217 LQQGLEGRLRVRAQQLNAFA--KSLQGALGDANGKAKEALEQSRQNIERTAEELRKAHPD 390
L +GL G ++ + L A + + L N + ++Q ++ + EE+ A +
Sbjct: 23 LVRGLPGTRKLHRRTLEAMGLRRCHRTVLHSNNSSIRGMIDQVKRMVVVETEEMYNARKE 82
Query: 391 VEKNATALREKLQAAVQNTVQESQKLA 471
E N ALR L + + +S ++
Sbjct: 83 AEANHKALRPPLVVSHSSPATDSSNMS 109
>At5g07780.1 68418.m00890 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 464
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -2
Query: 379 PCGAPRPCARCSASTVPKPPWPCRSRLRALPGDSW 275
P PRPC+R + P + RALPG W
Sbjct: 61 PPPLPRPCSRPPKTKCSLKPLHWVKKTRALPGSLW 95
>At3g49170.1 68416.m05374 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 850
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = -3
Query: 318 GLAVRVSERSLETLGEGVELLRTDSEPSFQALLKSCASFDLVSE 187
G A+RV E + + EGV+ +E ++ A+L +C+ LVSE
Sbjct: 554 GFAIRVLETFNQMIEEGVK----PNEVTYVAILSACSHVGLVSE 593
>At3g09550.1 68416.m01134 ankyrin repeat family protein contains
ankyrin repeat domains, Pfam:PF00023
Length = 436
Score = 27.9 bits (59), Expect = 6.2
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = +1
Query: 247 VRAQQLNAFAKSLQGALGDANGKAKEALEQSRQ---NIERTAEELRKAHPDVEKNAT 408
++A +LN L+ + + LEQ+R+ N++ A+ELRK H NAT
Sbjct: 206 LKANELNQPRDELRKTVTEIKKDVHTQLEQTRKTNKNVDGIAKELRKLHRAGINNAT 262
>At2g36410.2 68415.m04470 expressed protein contains Pfam profile
PF04949: Family of unknown function (DUF662)
Length = 192
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = +1
Query: 310 GKAKEALEQSRQNIERTAEEL---RKAHPDVEKNATALREKLQAAVQNTVQESQKLA 471
G + SR++ E T L R ++EK +RE++QA + QE+++L+
Sbjct: 45 GSLSFSSHMSREDEEMTRSALSAFRAKEDEIEKRRMEVRERIQAQLGRVEQETKRLS 101
>At2g36410.1 68415.m04469 expressed protein contains Pfam profile
PF04949: Family of unknown function (DUF662)
Length = 195
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = +1
Query: 310 GKAKEALEQSRQNIERTAEEL---RKAHPDVEKNATALREKLQAAVQNTVQESQKLA 471
G + SR++ E T L R ++EK +RE++QA + QE+++L+
Sbjct: 45 GSLSFSSHMSREDEEMTRSALSAFRAKEDEIEKRRMEVRERIQAQLGRVEQETKRLS 101
>At2g19950.1 68415.m02332 expressed protein contains 2 transmembrane
domains; weak similarity to HPSR2 - heavy chain
potential motor protein (GI:871048) [Giardia
intestinalis]
Length = 702
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +1
Query: 286 QGALGDANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATALREK 423
Q AL + + +AL + ER AEE R AH + K A RE+
Sbjct: 369 QAALNEGKLSSLQALREELATTERRAEEERSAH-NATKMAAMERER 413
>At5g40450.1 68418.m04905 expressed protein
Length = 2910
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/69 (23%), Positives = 34/69 (49%)
Frame = +1
Query: 301 DANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKV 480
D+NG E ++Q NI EE+ A P + ++ + + +++ + S++ +K V
Sbjct: 824 DSNGAEAEQIDQ---NITNETEEILVAKPVSLLDVKSVEQMQKPKLESPSEVSEETSKTV 880
Query: 481 SSNVQETNE 507
++E E
Sbjct: 881 DEKIEEKPE 889
>At3g59080.1 68416.m06586 aspartyl protease family protein contains
similarity to CND41, chloroplast nucleoid DNA binding
protein (GI:2541876) [Nicotiana tabacum]; contains Pfam
profile PF00026: Eukaryotic aspartyl protease
Length = 535
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 352 RCSASTVPKPPWPCRSRLRALPGDSW 275
RC+ + P PP PC+S ++ P W
Sbjct: 229 RCNLVSSPDPPMPCKSDNQSCPYYYW 254
>At3g50100.1 68416.m05477 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 406
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +1
Query: 256 QQLNAFAKSLQGA-LGDANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATALREK 423
Q L+ K LQ L NG KE L +N + ++ R++H D+ + T ++K
Sbjct: 11 QVLDELVKLLQSRDLRGENGNWKEFLHVYDKNADSPSDPSRRSHEDLVQFLTTFKKK 67
>At3g46990.1 68416.m05103 hypothetical protein contains Pfam profile
PF05340: Protein of unknown function (DUF740)
Length = 547
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = +2
Query: 152 KEFHKTLEQQFNSLTKSKDAQDFSKAWKDGSESVRNSSTPSPRVSRERSETRTARPRRLW 331
KE L ++ + T +K + S + G + R+SS PR+S + +PR W
Sbjct: 170 KEIASVLSRRLKNFTLNKRNDEKSDSRFAGIVNGRHSSDVDPRLSFDGGRISFEKPRSSW 229
Query: 332 N 334
+
Sbjct: 230 D 230
>At1g79280.1 68414.m09242 expressed protein weak similarity to
Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
Length = 2111
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/64 (23%), Positives = 34/64 (53%)
Frame = +1
Query: 316 AKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSSNVQ 495
AKE +E+ R +E + + + + N TAL++ +++A +N E++K + + + +
Sbjct: 970 AKEEIEKLRGEVESSKSHMLQYKSIAQVNETALKQ-MESAHENFRLEAEKRQRSLEAELV 1028
Query: 496 ETNE 507
E
Sbjct: 1029 SLRE 1032
>At1g19700.1 68414.m02457 homeobox-leucine zipper family protein
similar to BEL1-like homeodomain 1 (GI:13877517)
[Arabidopsis thaliana]; similar to homeodomain protein
GI:7239157 from (Malus domestica); contains weak hit to
Pfam profile PF00046: Homeobox domain
Length = 538
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/70 (21%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Frame = +1
Query: 235 GRLRVRAQQLNAFAKSLQGALG----DANGKAKEALEQSRQNIERTAEELRKAHPDVEKN 402
G+ +++ N+ +K ++G G D+NGK+ E R+ ++ +L +V+K
Sbjct: 193 GKKKMKVNDFNSGSKEIEGGGGELSSDSNGKSIELSTIEREELQNKKNKLLTMVDEVDKR 252
Query: 403 ATALREKLQA 432
+++A
Sbjct: 253 YNQYYHQMEA 262
>At1g01840.1 68414.m00103 expressed protein
Length = 152
Score = 27.5 bits (58), Expect = 8.2
Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 3/109 (2%)
Frame = +1
Query: 187 LAHQVKGRTGLQQGLE-GRLRVRAQQLNAFAKSLQGALGDANGKAKEALEQSRQNIERTA 363
+A Q+ G Q L+ LR+ Q+L+AF S+ A + + + E ++
Sbjct: 20 MAQQIGTTVGQNQLLQISSLRIAHQRLSAFLASIPTAEAEKSFSSVEPMQLGE------- 72
Query: 364 EELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKV--SSNVQETN 504
EE +A P E+ +A+ EK++ ++ +++L + + SS V ET+
Sbjct: 73 EEKGEAEPAEEERYSAI-EKVEEKMRECFIRNKRLKRPLSPSSAVVETS 120
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,911,447
Number of Sequences: 28952
Number of extensions: 191986
Number of successful extensions: 1061
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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