Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0551
(738 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 30 0.30
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 29 0.91
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac... 27 3.7
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam... 27 3.7
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe... 26 6.4
SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|ch... 26 6.4
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 25 8.5
SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce... 25 8.5
SPCC613.03 |||conserved fungal protein|Schizosaccharomyces pombe... 25 8.5
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 25 8.5
>SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 320
Score = 30.3 bits (65), Expect = 0.30
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +1
Query: 526 AHSLKASSTTVL*HTVLYNSLLHGWYSIQRNEV 624
+HSLK ++L VL +SLLH WYS+ + +
Sbjct: 262 SHSLKLKDGSIL---VLRSSLLHQWYSLPKQSI 291
>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1396
Score = 28.7 bits (61), Expect = 0.91
Identities = 9/32 (28%), Positives = 21/32 (65%)
Frame = +3
Query: 327 LLIGACFYNMANDGTEMFNHLKLCVGIVIFFA 422
L++G+ FYN+ N+ +E+++ + ++F A
Sbjct: 444 LMLGSLFYNLRNESSELYSRGSVLSNAIVFTA 475
>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
Lac1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 26.6 bits (56), Expect = 3.7
Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Frame = +3
Query: 258 MLLQISRNRQGLWIQLLHHLMCGLLIGACFY-NMANDGTEMF-----NHLKLCVGIVIFF 419
++LQ+ + R+ ++HH++ LLIG +Y + G +F + + L + + +
Sbjct: 211 LILQLEKPRKDFKELVVHHIITLLLIGLSYYFHFTWIGLAVFITMDTSDIWLALSKCLNY 270
Query: 420 AYTQIMVPVLVYPQEVKLVKKEYFN 494
T I+ P+ V V + + Y N
Sbjct: 271 VNTVIVYPIFVIFVFVWIYMRHYLN 295
>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 26.6 bits (56), Expect = 3.7
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -2
Query: 413 YHNSHTQLQVVKHLCSVVGHIIE 345
YHN H Q+Q +LC + +I+
Sbjct: 487 YHNEHIQVQEDNYLCPIENSLID 509
>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +1
Query: 598 WYSIQRNEVHNVLCRGEHGVFSLRRIGLAIGSVFNVTNG 714
WYS V++ C + + L IG AIG + N G
Sbjct: 292 WYSFFPRYVYSTNCMNDSLLTRLEGIGNAIGRIGNAFRG 330
>SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 204
Score = 25.8 bits (54), Expect = 6.4
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 288 GLWIQLLHHLMCGLLIGACF 347
G+W+++ HHL GLL CF
Sbjct: 35 GVWVEIYHHLEKGLL-QQCF 53
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 25.4 bits (53), Expect = 8.5
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 601 YSIQRN-EVHNVLCRGEHGVFSLRRIGLAIGSVFNVTN 711
Y +Q N +HNV G+H F L G IG F ++N
Sbjct: 452 YGMQHNVTIHNVSTIGKHPSFPLSNNGELIGE-FTLSN 488
>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 344
Score = 25.4 bits (53), Expect = 8.5
Identities = 10/43 (23%), Positives = 23/43 (53%)
Frame = -1
Query: 369 FRRWPYYRSMLLSEARTSSDVIVGSKALAYSLRSAATSFEKYT 241
F W +YR ++S+ + + + K + Y+ + AT+F ++
Sbjct: 144 FHGW-HYRRYVVSQIERAGNCSLAKKEMEYTTSAIATNFSNFS 185
>SPCC613.03 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 189
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/48 (25%), Positives = 21/48 (43%)
Frame = +1
Query: 535 LKASSTTVL*HTVLYNSLLHGWYSIQRNEVHNVLCRGEHGVFSLRRIG 678
+K S+ L T+L+ S GW + H++ + F L +G
Sbjct: 1 MKFSTVGFLFSTILFKSAFAGWMDTHMKDEHHIDKYTDESFFRLHDLG 48
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 384 HLKLCVGIVIFFAYTQIMVPVLVYPQEVKLV 476
H + G++ F Y + PVLV P KLV
Sbjct: 1023 HKEEIFGVIGKFVYWAYVAPVLVSPDNFKLV 1053
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,148,250
Number of Sequences: 5004
Number of extensions: 66626
Number of successful extensions: 196
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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