BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0551 (738 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 30 0.30 SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 29 0.91 SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac... 27 3.7 SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam... 27 3.7 SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe... 26 6.4 SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|ch... 26 6.4 SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 25 8.5 SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce... 25 8.5 SPCC613.03 |||conserved fungal protein|Schizosaccharomyces pombe... 25 8.5 SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 25 8.5 >SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual Length = 320 Score = 30.3 bits (65), Expect = 0.30 Identities = 14/33 (42%), Positives = 21/33 (63%) Frame = +1 Query: 526 AHSLKASSTTVL*HTVLYNSLLHGWYSIQRNEV 624 +HSLK ++L VL +SLLH WYS+ + + Sbjct: 262 SHSLKLKDGSIL---VLRSSLLHQWYSLPKQSI 291 >SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1396 Score = 28.7 bits (61), Expect = 0.91 Identities = 9/32 (28%), Positives = 21/32 (65%) Frame = +3 Query: 327 LLIGACFYNMANDGTEMFNHLKLCVGIVIFFA 422 L++G+ FYN+ N+ +E+++ + ++F A Sbjct: 444 LMLGSLFYNLRNESSELYSRGSVLSNAIVFTA 475 >SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac1|Schizosaccharomyces pombe|chr 2|||Manual Length = 384 Score = 26.6 bits (56), Expect = 3.7 Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 6/85 (7%) Frame = +3 Query: 258 MLLQISRNRQGLWIQLLHHLMCGLLIGACFY-NMANDGTEMF-----NHLKLCVGIVIFF 419 ++LQ+ + R+ ++HH++ LLIG +Y + G +F + + L + + + Sbjct: 211 LILQLEKPRKDFKELVVHHIITLLLIGLSYYFHFTWIGLAVFITMDTSDIWLALSKCLNY 270 Query: 420 AYTQIMVPVLVYPQEVKLVKKEYFN 494 T I+ P+ V V + + Y N Sbjct: 271 VNTVIVYPIFVIFVFVWIYMRHYLN 295 >SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy |Schizosaccharomyces pombe|chr 1|||Manual Length = 543 Score = 26.6 bits (56), Expect = 3.7 Identities = 9/23 (39%), Positives = 14/23 (60%) Frame = -2 Query: 413 YHNSHTQLQVVKHLCSVVGHIIE 345 YHN H Q+Q +LC + +I+ Sbjct: 487 YHNEHIQVQEDNYLCPIENSLID 509 >SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe|chr 3|||Manual Length = 349 Score = 25.8 bits (54), Expect = 6.4 Identities = 13/39 (33%), Positives = 18/39 (46%) Frame = +1 Query: 598 WYSIQRNEVHNVLCRGEHGVFSLRRIGLAIGSVFNVTNG 714 WYS V++ C + + L IG AIG + N G Sbjct: 292 WYSFFPRYVYSTNCMNDSLLTRLEGIGNAIGRIGNAFRG 330 >SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|chr 3|||Manual Length = 204 Score = 25.8 bits (54), Expect = 6.4 Identities = 10/20 (50%), Positives = 14/20 (70%) Frame = +3 Query: 288 GLWIQLLHHLMCGLLIGACF 347 G+W+++ HHL GLL CF Sbjct: 35 GVWVEIYHHLEKGLL-QQCF 53 >SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 848 Score = 25.4 bits (53), Expect = 8.5 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Frame = +1 Query: 601 YSIQRN-EVHNVLCRGEHGVFSLRRIGLAIGSVFNVTN 711 Y +Q N +HNV G+H F L G IG F ++N Sbjct: 452 YGMQHNVTIHNVSTIGKHPSFPLSNNGELIGE-FTLSN 488 >SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces pombe|chr 3|||Manual Length = 344 Score = 25.4 bits (53), Expect = 8.5 Identities = 10/43 (23%), Positives = 23/43 (53%) Frame = -1 Query: 369 FRRWPYYRSMLLSEARTSSDVIVGSKALAYSLRSAATSFEKYT 241 F W +YR ++S+ + + + K + Y+ + AT+F ++ Sbjct: 144 FHGW-HYRRYVVSQIERAGNCSLAKKEMEYTTSAIATNFSNFS 185 >SPCC613.03 |||conserved fungal protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 189 Score = 25.4 bits (53), Expect = 8.5 Identities = 12/48 (25%), Positives = 21/48 (43%) Frame = +1 Query: 535 LKASSTTVL*HTVLYNSLLHGWYSIQRNEVHNVLCRGEHGVFSLRRIG 678 +K S+ L T+L+ S GW + H++ + F L +G Sbjct: 1 MKFSTVGFLFSTILFKSAFAGWMDTHMKDEHHIDKYTDESFFRLHDLG 48 >SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual Length = 1489 Score = 25.4 bits (53), Expect = 8.5 Identities = 12/31 (38%), Positives = 16/31 (51%) Frame = +3 Query: 384 HLKLCVGIVIFFAYTQIMVPVLVYPQEVKLV 476 H + G++ F Y + PVLV P KLV Sbjct: 1023 HKEEIFGVIGKFVYWAYVAPVLVSPDNFKLV 1053 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,148,250 Number of Sequences: 5004 Number of extensions: 66626 Number of successful extensions: 196 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 190 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 196 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 349251756 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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