Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0551
(738 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0393 - 3062859-3062972,3063027-3063311,3063472-3063759,306... 42 5e-04
08_01_0442 + 3922402-3922707,3922940-3923816,3925741-3926831 31 0.72
10_08_0076 + 14685364-14686468,14686521-14686540,14686614-146867... 30 1.7
06_03_0710 + 23792138-23792293,23792974-23793257,23794344-237944... 30 1.7
11_01_0499 - 3834300-3835255,3836703-3837540,3837636-3837680 29 2.9
05_04_0148 - 18426903-18427106,18430516-18430594,18430752-184309... 29 2.9
11_04_0096 + 13435988-13436803,13436880-13437053,13437673-134378... 29 5.1
05_07_0173 + 28140484-28140869,28141079-28141481,28141719-281417... 29 5.1
09_04_0489 - 18031187-18031579,18032033-18034030,18034102-180342... 28 8.9
01_05_0658 - 24043655-24043945,24044003-24044257,24044359-240445... 28 8.9
>03_01_0393 -
3062859-3062972,3063027-3063311,3063472-3063759,
3063844-3064161,3064232-3064415,3064504-3064659,
3066394-3066620,3066734-3066804,3067090-3067534
Length = 695
Score = 41.9 bits (94), Expect = 5e-04
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +2
Query: 497 LVQLTPYYAALTVSKLPVQLFCNILFSTIVYFMAGIPFNVMRF 625
+ +L+ Y+ A T S LP+ LF ++F IVYFMAG+ F
Sbjct: 601 MYKLSAYFLARTTSDLPLDLFLPVIFMVIVYFMAGLKATAAHF 643
>08_01_0442 + 3922402-3922707,3922940-3923816,3925741-3926831
Length = 757
Score = 31.5 bits (68), Expect = 0.72
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 497 LVQLTPYYAALTVSKLPVQLFCNILFSTIVYFMAGI 604
+ +L+ Y+AA T + LP++L F I+Y+M G+
Sbjct: 577 MYRLSSYFAARTAADLPMELALPTAFVVILYWMGGL 612
>10_08_0076 +
14685364-14686468,14686521-14686540,14686614-14686749,
14687537-14687664,14687742-14687855
Length = 500
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +1
Query: 55 PETEIMLTNEKCVYKVQSYSNTASMCSLSSQLSGIN-NSSAWMKIQKPSDYDISYST 222
P ++ + + Y+ Q++ N + +S L+G+N + W S+YD+SYS+
Sbjct: 365 PPNHVLNLSHQVYYENQNF-NVLLLLIKNSDLTGVNLKKTGWQGPSLVSEYDVSYSS 420
>06_03_0710 +
23792138-23792293,23792974-23793257,23794344-23794499,
23795318-23795804,23795864-23796181,23796773-23797165,
23797752-23798021
Length = 687
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +2
Query: 497 LVQLTPYYAALTVSKLPVQLFCNILFSTIVYFMAGIPFNVMRFITFCAVGNMVSLVSE 670
+ +L+ YYA+ TV + +LF+ I+YFMA + V F ++ L S+
Sbjct: 505 MYRLSAYYASSTVCDAVPHVVYPVLFTAILYFMADLRRTVPCFCLTLLATLLIVLTSQ 562
>11_01_0499 - 3834300-3835255,3836703-3837540,3837636-3837680
Length = 612
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +2
Query: 506 LTPYYAALTVSKLPVQLFCNILFSTIVYFMAGIPFNVMRFITFCAVGNMVSLVSE 670
L+ Y+ + LP++L F+ IVY MAG+ + F AV LV+E
Sbjct: 449 LSSYFMSRMAGDLPMELALPAAFTVIVYLMAGLNPSPAAFALTLAVILSYVLVAE 503
>05_04_0148 -
18426903-18427106,18430516-18430594,18430752-18430935,
18431020-18431063,18432028-18432165,18432713-18434511
Length = 815
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +2
Query: 503 QLTPYYAALTVSKLPVQLFCNILFSTIVYFMAGIPFNVMRFITFCAVGNMVSLVS 667
+L+ Y A + P L ++LFS VYF+AG+ F F ++ L++
Sbjct: 473 RLSSYVVANALVFAPCLLAVSLLFSAPVYFLAGLRATTQAFACFALAVWLIVLMA 527
>11_04_0096 +
13435988-13436803,13436880-13437053,13437673-13437834,
13438548-13438690,13439059-13439134,13439231-13439403,
13439482-13439563,13439949-13440026,13440369-13440461,
13441026-13441187,13441225-13441530,13442265-13442369,
13443097-13443243
Length = 838
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +2
Query: 512 PYYAALTVSKLPVQLFCNILFSTIVYFMAG 601
P+YAA++ S +P +LF ST+ Y +AG
Sbjct: 101 PHYAAISESNVPAELFPQC--STVEYLLAG 128
>05_07_0173 + 28140484-28140869,28141079-28141481,28141719-28141781,
28142350-28142535,28144695-28145076,28145689-28145780,
28145988-28146737,28146969-28147100,28147149-28147247,
28147977-28148132,28150187-28150317,28150798-28151254,
28151327-28151668,28152137-28153001,28153112-28153170,
28153806-28154261,28154835-28154873,28155016-28155201
Length = 1727
Score = 28.7 bits (61), Expect = 5.1
Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 22/114 (19%)
Frame = +1
Query: 1 EPLPQMQLKVCYQAEDNAPETEIMLTNEK--------------CVY----KVQSYSNTAS 126
+PLP+++ CY+ E P ++ L EK C+ + + +S
Sbjct: 1332 KPLPKIESDFCYRREKGFPGIQVALNQEKNQTSNLMHALHDEECLIFTLAREMGSKDVSS 1391
Query: 127 MCSLSSQLSGINNSSAWMKIQKPSDYDISYSTSYFDQFSILLKG----CCCRSQ 276
+ LS +NNSS+ + S + SYS +D +I K CC+ +
Sbjct: 1392 QVESQNMLSYLNNSSSCRCLLSASHLERSYSGWPWDAMNIYAKQLPSLSCCKDE 1445
>09_04_0489 -
18031187-18031579,18032033-18034030,18034102-18034234,
18035360-18036108
Length = 1090
Score = 27.9 bits (59), Expect = 8.9
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = +1
Query: 43 EDNAPETEIM---LTNEKCVYKVQSYSNTASMCSLSSQLSGINNSSAWMKIQKPSDYDIS 213
EDNA E + +T+ + V++YSN + S L+ +NN+ I +DY
Sbjct: 789 EDNAKEQLVNPRNITSNDAGFDVEAYSNIFNGAITESSLAQLNNA-----INMKADYSSC 843
Query: 214 YSTS 225
YS S
Sbjct: 844 YSLS 847
>01_05_0658 - 24043655-24043945,24044003-24044257,24044359-24044530,
24044617-24044844,24045688-24045821,24045908-24045991,
24046202-24046492,24046571-24046903,24047002-24047246,
24047476-24047742,24048305-24048465,24048556-24048872,
24048966-24049247,24049325-24049626,24049699-24049789,
24049881-24049934,24050028-24050104,24050192-24050367,
24051331-24051540,24051626-24052029
Length = 1457
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 512 PYYAALTVSKLPVQLFCNILFSTIVYFMAGIPFNVMRFITF 634
PY + P L ++++S IVY M G + V +F +
Sbjct: 1271 PYAFGQVAIEFPYTLVQSVIYSIIVYSMIGFQWTVAKFFWY 1311
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,551,438
Number of Sequences: 37544
Number of extensions: 394183
Number of successful extensions: 983
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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