Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0551
         (738 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26155| Best HMM Match : No HMM Matches (HMM E-Value=.)              53   3e-07
SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.74 
SB_6359| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.0  
SB_59432| Best HMM Match : MORN (HMM E-Value=9.3e-26)                  29   3.0  
SB_27050| Best HMM Match : Pkinase_Tyr (HMM E-Value=1e-06)             29   3.9  
SB_16306| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_54462| Best HMM Match : TPR_1 (HMM E-Value=3.9e-32)                 29   5.2  
SB_44530| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_52868| Best HMM Match : Homeobox (HMM E-Value=1.6e-23)              28   6.9  
SB_31135| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_15464| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_14976| Best HMM Match : rve (HMM E-Value=1.3e-38)                   28   9.1  

>SB_26155| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 815

 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 26/86 (30%), Positives = 45/86 (52%)
 Frame = +3

Query: 252 QRMLLQISRNRQGLWIQLLHHLMCGLLIGACFYNMANDGTEMFNHLKLCVGIVIFFAYTQ 431
           +R    I R+R    ++++     GLLIG  +  + ND  ++FN+       ++F  +T 
Sbjct: 541 KRAFQSILRDRVFTHLRVVSIAAVGLLIGLLYLGIGNDANKVFNNTGCLFFSLLFLMFTS 600

Query: 432 IMVPVLVYPQEVKLVKKEYFNCWYSL 509
           +M  VL +P E  +  +E+ N WYSL
Sbjct: 601 LMPTVLTFPMEKLVFIREHLNNWYSL 626



 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 19/55 (34%), Positives = 32/55 (58%)
 Frame = +2

Query: 506 LTPYYAALTVSKLPVQLFCNILFSTIVYFMAGIPFNVMRFITFCAVGNMVSLVSE 670
           L  YY A T++ +P Q+   +++ TIVYFM   P   +R+  F A+  +  LV++
Sbjct: 626 LKSYYLAKTMADVPFQILFPLIYCTIVYFMTEQPHEGLRYTQFVAITILTCLVAQ 680


>SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4247

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 435  MVPVLVYPQEVKLVKKEYFN-CWYSLLHTTPRSQSQSFQYN 554
            +VPVLV  Q + LV + YFN   Y     TP  Q  S +YN
Sbjct: 4111 LVPVLVSTQSLILVAEPYFNEPGYERSRGTPSGQQNSQEYN 4151


>SB_6359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 587 YFMAGIPFNVMRFITFCAVGNMVSLVSEESAWL 685
           +++ G+ F V+  + FC + N+ S   E+  WL
Sbjct: 160 FWVEGVQFVVLNSLYFCELSNLESFKQEQQEWL 192


>SB_59432| Best HMM Match : MORN (HMM E-Value=9.3e-26)
          Length = 1362

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -2

Query: 737 IADGPTAHPFVTLKTDPIAKPILRRLKTPCSPRHRTL 627
           ++  P +H  +TL+T+P  KP+LR  ++    + R+L
Sbjct: 643 VSTQPLSHDDITLETNPGRKPVLRHTRSCDDVKERSL 679


>SB_27050| Best HMM Match : Pkinase_Tyr (HMM E-Value=1e-06)
          Length = 571

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 601 YSIQRNEVHNVLCRGEHGVFSLRRIGLAIGSVFN 702
           Y++  N V N++ RGE+G F+    G+   S  N
Sbjct: 348 YTVNENYVKNIIKRGENGAFTFADAGILYPSPAN 381


>SB_16306| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 958

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/56 (30%), Positives = 32/56 (57%)
 Frame = +2

Query: 503 QLTPYYAALTVSKLPVQLFCNILFSTIVYFMAGIPFNVMRFITFCAVGNMVSLVSE 670
           +L+ YY A   S+LP+ +   I F  + Y+M G+  +V  F+T  +V  + S+ ++
Sbjct: 225 RLSAYYFAKLFSELPLVVCQPIGFMLVAYWMCGLNESV-AFLTHLSVLLLTSITAQ 279


>SB_54462| Best HMM Match : TPR_1 (HMM E-Value=3.9e-32)
          Length = 425

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +3

Query: 333 IGACFYNMANDGTEMFNHLK-LCV 401
           IGA FY++ +DG  M N+ K LC+
Sbjct: 147 IGAVFYSLGDDGQAMMNYKKALCI 170


>SB_44530| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = +1

Query: 166 SSAWMKIQKPSDYDISYSTSYF 231
           SS+W KI++P   D++ STSYF
Sbjct: 52  SSSW-KIERPEPLDLNQSTSYF 72


>SB_52868| Best HMM Match : Homeobox (HMM E-Value=1.6e-23)
          Length = 434

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 734 ADGPTAHPFVTLKTDPIAKPILRRLKTP 651
           A  PT HP +T  + P   P + R  TP
Sbjct: 205 ASTPTTHPHITHASTPTTHPYIARASTP 232



 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -2

Query: 734 ADGPTAHPFVTLKTDPIAKPILRRLKTPCSPRHRT 630
           A  PT HP +T  + P   P +    TP +  H T
Sbjct: 123 ASTPTTHPHITHASTPTTHPHITHASTPTTHPHIT 157


>SB_31135| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 9/42 (21%), Positives = 21/42 (50%)
 Frame = +3

Query: 387 LKLCVGIVIFFAYTQIMVPVLVYPQEVKLVKKEYFNCWYSLL 512
           +  C+G  ++   T ++ P ++      L  KE  +CW+ ++
Sbjct: 75  ISACIGYDVYQVMTDVVKPKIIVVAYESLKIKENLSCWFEIV 116


>SB_15464| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1042

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +2

Query: 536 SKLPVQLFCNILFSTIVYFMAGIPFNVMRFITFCAVGNMVSL 661
           +KL    F NILF   ++F  G+P  +M  +   AVG++ S+
Sbjct: 863 NKLHYATFINILF---IFFALGMPIILMNMLVGLAVGDIDSI 901


>SB_14976| Best HMM Match : rve (HMM E-Value=1.3e-38)
          Length = 1172

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -2

Query: 446 NWDHDLRVREEYHNSHTQLQVVKHLCSVVGHIIE 345
           NW+  L+++ + HN       VK LC     ++E
Sbjct: 39  NWEKTLKLKPQVHNVAVDTTSVKQLCEKYKEVLE 72


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,374,892
Number of Sequences: 59808
Number of extensions: 480620
Number of successful extensions: 1259
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1256
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)