Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0551
         (738 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    25   0.56 
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    25   0.56 
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    25   0.74 
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    24   1.7  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    23   4.0  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   6.9  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    22   6.9  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   6.9  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   6.9  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    21   9.1  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   9.1  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   9.1  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 25.4 bits (53), Expect = 0.56
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 571 VLYNSLLHGWYSIQRNEVHNVLCRG 645
           +LY S LH W +I + E  N   +G
Sbjct: 251 ILYKSTLHCWATIYKTEGGNAFFKG 275


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 25.4 bits (53), Expect = 0.56
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 571 VLYNSLLHGWYSIQRNEVHNVLCRG 645
           +LY S LH W +I + E  N   +G
Sbjct: 251 ILYKSTLHCWATIYKTEGGNAFFKG 275


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 25.0 bits (52), Expect = 0.74
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -3

Query: 655 HHVPHGTERYEPHYVEWNTSHEVNYCREQ-YVTKQLYWKL*DCE 527
           HH    TE+     +E + S EVN  +E+ ++  +L   L +CE
Sbjct: 66  HHCNQDTEKLNQLEIESDNSKEVNDKKEENFIVDRLRNDLFECE 109


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +1

Query: 112 SNTASMCSLSSQLSGINNSSAWMKIQKPSDYDISYST 222
           +NT  MCS    +  +N S    ++  P D  ++ ST
Sbjct: 148 NNTQPMCSPKLHVFDLNTSHQLKQVVMPHDIAVNAST 184


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 459 QEVKLVKKEYFNCWYSLLHTTPRSQS 536
           Q   L+ +    CW SLL  +P +Q+
Sbjct: 328 QFFNLIDQNAVGCWNSLLPYSPENQA 353


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = -3

Query: 517 VWSKLYQQLKYSFFTNLTSCG*TKTGTMICVYAKNITIPTHSFKWLNISVPSLAIL 350
           V   L+ Q+ Y+   +L  CG   T TMI     N+ +   S K L+I+   + I+
Sbjct: 119 VLGPLFCQI-YAMLGSLFGCGSIWTMTMIAFDRYNVIVKGLSGKPLSINGALIRII 173


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = -3

Query: 517 VWSKLYQQLKYSFFTNLTSCG*TKTGTMICVYAKNITIPTHSFKWLNISVPSLAIL 350
           V   L+ Q+ Y+   +L  CG   T TMI     N+ +   S K L+I+   + I+
Sbjct: 85  VLGPLFCQI-YAMLGSLFGCGSIWTMTMIAFDRYNVIVKGLSGKPLSINGALIRII 139


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 10/46 (21%), Positives = 19/46 (41%)
 Frame = +1

Query: 55  PETEIMLTNEKCVYKVQSYSNTASMCSLSSQLSGINNSSAWMKIQK 192
           P   +  +  KC + + SY      CSL       N ++  + ++K
Sbjct: 59  PRYPLPYSGSKCTWTITSYHRINLKCSLVEFSENKNCNAGSLTVKK 104


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 330 LIGACFYNMANDGTEMFNHLKLCV 401
           ++G C+Y ++    E  +H  LCV
Sbjct: 319 ILGDCYYCISGAPIERPDHAVLCV 342


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +3

Query: 381 NHLKLCVGIVIFFAYTQIMVPVLVYPQEVKLVKKEY 488
           NH   C    I  A T I      YP E +L+ + Y
Sbjct: 63  NHCNRCTSRQIGIANTLIPFMQQNYPYEWQLILRRY 98


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 598 WYSIQRNEVHNVLCRGEHGVF 660
           WY I RN  + +  R + G+F
Sbjct: 282 WYWIDRNSAYKIDQRIQKGLF 302


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -3

Query: 487 YSFFTNLTSCG*TKTGTMICVYAKNITIPTHSFKWLNISVPSLAIL 350
           Y+   +L  CG   T TMI     N+ +   S K L+I+   + I+
Sbjct: 4   YAMLGSLFGCGSIWTMTMIAFDRYNVIVKGLSGKPLSINGALIRII 49


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,918
Number of Sequences: 438
Number of extensions: 4729
Number of successful extensions: 21
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)