Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0550
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ...    26   6.4  
SPAC11D3.09 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Manual    25   8.5  
SPBC19F8.06c |meu22||amino acid permease, unknown 11|Schizosacch...    25   8.5  

>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 215 DGDKCVQQIKDHKNR 171
           D DKC++++K HK R
Sbjct: 132 DSDKCLRRLKSHKER 146


>SPAC11D3.09 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 394

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 9/39 (23%), Positives = 20/39 (51%)
 Frame = +3

Query: 528 SNRFSSFGAYSIQTNKQNFPLYKISIDCINVPILNIDGS 644
           S R + +G Y++      F  +   +DC ++P+ + D +
Sbjct: 104 SRRLNLYGGYNVPMETNPFNNWAKIVDCGDIPLTSYDNA 142


>SPBC19F8.06c |meu22||amino acid permease, unknown
           11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 175 FLWSLICCTHLSPSRIAE*RNNKIEKKMIGKIF 273
           F+W  IC  H+   R  + +N K+E      IF
Sbjct: 430 FIWGSICLAHIQFRRAWKIQNRKLEDLPYRSIF 462


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,854,181
Number of Sequences: 5004
Number of extensions: 58184
Number of successful extensions: 125
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)