BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0550 (738 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g10740.1 68417.m01754 F-box family protein contains Pfam PF00... 32 0.35 At5g01670.1 68418.m00083 aldose reductase, putative similar to a... 28 5.6 At2g46495.1 68415.m05788 zinc finger (C3HC4-type RING finger) fa... 27 9.8 >At4g10740.1 68417.m01754 F-box family protein contains Pfam PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box protein interaction domain Length = 427 Score = 32.3 bits (70), Expect = 0.35 Identities = 16/47 (34%), Positives = 25/47 (53%) Frame = +1 Query: 127 KVGFVRTLITRERQDRFLWSLICCTHLSPSRIAE*RNNKIEKKMIGK 267 + G VR L+ +E D+ W L+C S +I + K +KK+I K Sbjct: 366 EAGCVRKLVLKESGDKSCWPLVCSYVPSTVQIKQHNRGKRQKKVIRK 412 >At5g01670.1 68418.m00083 aldose reductase, putative similar to aldose reductase [Hordeum vulgare][GI:728592], aldose reductase ALDRXV4 [Xerophyta viscosa][GI:4539944] Length = 322 Score = 28.3 bits (60), Expect = 5.6 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = +1 Query: 160 ERQDRFLWSLICCTHLSPSRIAE*RNNKIEK 252 ER+D F+ S + CT LSP R+ N +++ Sbjct: 79 ERRDLFVTSKLWCTELSPERVRPALQNTLKE 109 >At2g46495.1 68415.m05788 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) Length = 878 Score = 27.5 bits (58), Expect = 9.8 Identities = 14/28 (50%), Positives = 17/28 (60%) Frame = +3 Query: 138 CSNTYNSRTAGPIFMVFDLLYTFVSVPN 221 C NSR+ P FD+LYTF+S PN Sbjct: 653 CPLCRNSRS--PFSPHFDILYTFLSCPN 678 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,812,333 Number of Sequences: 28952 Number of extensions: 263856 Number of successful extensions: 433 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 420 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 433 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1624036432 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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