Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0550
         (738 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10740.1 68417.m01754 F-box family protein contains Pfam PF00...    32   0.35 
At5g01670.1 68418.m00083 aldose reductase, putative similar to a...    28   5.6  
At2g46495.1 68415.m05788 zinc finger (C3HC4-type RING finger) fa...    27   9.8  

>At4g10740.1 68417.m01754 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
           protein interaction domain
          Length = 427

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +1

Query: 127 KVGFVRTLITRERQDRFLWSLICCTHLSPSRIAE*RNNKIEKKMIGK 267
           + G VR L+ +E  D+  W L+C    S  +I +    K +KK+I K
Sbjct: 366 EAGCVRKLVLKESGDKSCWPLVCSYVPSTVQIKQHNRGKRQKKVIRK 412


>At5g01670.1 68418.m00083 aldose reductase, putative similar to
           aldose reductase [Hordeum vulgare][GI:728592], aldose
           reductase ALDRXV4 [Xerophyta viscosa][GI:4539944]
          Length = 322

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 160 ERQDRFLWSLICCTHLSPSRIAE*RNNKIEK 252
           ER+D F+ S + CT LSP R+     N +++
Sbjct: 79  ERRDLFVTSKLWCTELSPERVRPALQNTLKE 109


>At2g46495.1 68415.m05788 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 878

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +3

Query: 138 CSNTYNSRTAGPIFMVFDLLYTFVSVPN 221
           C    NSR+  P    FD+LYTF+S PN
Sbjct: 653 CPLCRNSRS--PFSPHFDILYTFLSCPN 678


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,812,333
Number of Sequences: 28952
Number of extensions: 263856
Number of successful extensions: 433
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)