BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0549 (643 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb... 26 5.3 SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 5.3 SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 25 7.0 SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 25 7.0 SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 25 9.3 SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c... 25 9.3 >SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pombe|chr 2|||Manual Length = 440 Score = 25.8 bits (54), Expect = 5.3 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 3/29 (10%) Frame = -2 Query: 276 KLFNINQFISRSPN---ICIYVTHNLNYQ 199 KLF+ + +S S N IC++ H+ NYQ Sbjct: 359 KLFSCGRIVSVSKNCADICVWDLHDTNYQ 387 >SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual Length = 188 Score = 25.8 bits (54), Expect = 5.3 Identities = 8/15 (53%), Positives = 10/15 (66%) Frame = -3 Query: 461 YWEVFFFFYIKHFKR 417 YW FFFF+ H +R Sbjct: 76 YWFFFFFFFFSHCRR 90 >SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |Schizosaccharomyces pombe|chr 2|||Manual Length = 1944 Score = 25.4 bits (53), Expect = 7.0 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 3/34 (8%) Frame = -2 Query: 453 SFFFFLHKTFQKKSTEMFR---RFCPTICLINNL 361 +F+ +L F+++ M R R C T+CLI+ L Sbjct: 496 NFWVYLQNVFREEKFFMVRIVFRACSTVCLIDKL 529 >SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase Fab1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 1932 Score = 25.4 bits (53), Expect = 7.0 Identities = 16/55 (29%), Positives = 26/55 (47%) Frame = -2 Query: 426 FQKKSTEMFRRFCPTICLINNLSHQ*SINTKYKKKTSYKIFEKLYRSPNEKLFNI 262 FQ+ E+F F P++ L NN S+ + K K+ + EK S ++ I Sbjct: 1082 FQRDLIEIFELFVPSVTLRNNPSYIKELKEKEYKRLK-GVIEKCLSSVASRINQI 1135 >SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces pombe|chr 2|||Manual Length = 3699 Score = 25.0 bits (52), Expect = 9.3 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%) Frame = -2 Query: 315 YKIFEKLYRSPNEKLFNINQFISRSPNICIYVTHN-LNYQH*LSIRKSFIKSSLGVW 148 +++ EK+ +S L QF+ IY N +N+Q+ L IKS+L VW Sbjct: 2755 HQLPEKVNQSHYSLLHLFQQFVELQEAATIYSHLNAINFQN-LPTNVQLIKSALQVW 2810 >SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr 1|||Manual Length = 959 Score = 25.0 bits (52), Expect = 9.3 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = +3 Query: 432 YVKKKKNFPIGRFGLRLCFNVI 497 YV+KK PIG F RL V+ Sbjct: 339 YVRKKFGVPIGNFFSRLSLTVV 360 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,604,620 Number of Sequences: 5004 Number of extensions: 54688 Number of successful extensions: 134 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 130 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 134 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 287744314 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -