Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0549
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    26   5.3  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      26   5.3  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    25   7.0  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    25   7.0  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   9.3  
SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c...    25   9.3  

>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
 Frame = -2

Query: 276 KLFNINQFISRSPN---ICIYVTHNLNYQ 199
           KLF+  + +S S N   IC++  H+ NYQ
Sbjct: 359 KLFSCGRIVSVSKNCADICVWDLHDTNYQ 387


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 461 YWEVFFFFYIKHFKR 417
           YW  FFFF+  H +R
Sbjct: 76  YWFFFFFFFFSHCRR 90


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = -2

Query: 453 SFFFFLHKTFQKKSTEMFR---RFCPTICLINNL 361
           +F+ +L   F+++   M R   R C T+CLI+ L
Sbjct: 496 NFWVYLQNVFREEKFFMVRIVFRACSTVCLIDKL 529


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = -2

Query: 426  FQKKSTEMFRRFCPTICLINNLSHQ*SINTKYKKKTSYKIFEKLYRSPNEKLFNI 262
            FQ+   E+F  F P++ L NN S+   +  K  K+    + EK   S   ++  I
Sbjct: 1082 FQRDLIEIFELFVPSVTLRNNPSYIKELKEKEYKRLK-GVIEKCLSSVASRINQI 1135


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -2

Query: 315  YKIFEKLYRSPNEKLFNINQFISRSPNICIYVTHN-LNYQH*LSIRKSFIKSSLGVW 148
            +++ EK+ +S    L    QF+       IY   N +N+Q+ L      IKS+L VW
Sbjct: 2755 HQLPEKVNQSHYSLLHLFQQFVELQEAATIYSHLNAINFQN-LPTNVQLIKSALQVW 2810


>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 959

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 432 YVKKKKNFPIGRFGLRLCFNVI 497
           YV+KK   PIG F  RL   V+
Sbjct: 339 YVRKKFGVPIGNFFSRLSLTVV 360


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,604,620
Number of Sequences: 5004
Number of extensions: 54688
Number of successful extensions: 134
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)