Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0549
         (643 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0056 + 25461423-25461708,25461986-25462026,25466047-254660...    29   4.1  
07_01_0464 - 3504264-3504475,3504842-3505031,3505310-3505408,350...    27   9.6  
05_01_0315 - 2468267-2468293,2469021-2469070,2469159-2469234,246...    27   9.6  
02_05_0528 - 29782382-29782864,29782994-29783092,29783319-297833...    27   9.6  

>02_05_0056 +
           25461423-25461708,25461986-25462026,25466047-25466083,
           25466451-25466594,25466882-25466974,25467067-25467155,
           25467241-25467537,25467629-25467765,25467860-25467952,
           25468061-25468166,25468243-25468395
          Length = 491

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = -3

Query: 473 PEPAYWEVFFFFYIKHFKRKAQKCSEDF--VQQSA**TIYPINNQLIQNIKKKHPTKSSR 300
           P PA+ +  + F +  FKR  Q  S DF    +S      P  ++ I +  K+ P ++  
Sbjct: 165 PNPAFSDDAYIFLLNWFKRFPQYKSHDFYIAGESYAGHYVPQLSEKIFDGNKQGPKENYI 224

Query: 299 NFTGLLMKNYL 267
           NF G ++ N L
Sbjct: 225 NFKGFMIGNAL 235


>07_01_0464 - 3504264-3504475,3504842-3505031,3505310-3505408,
            3505561-3505653,3505926-3506891,3507267-3507485,
            3508038-3508247,3508371-3508630,3508956-3510737,
            3510796-3511009
          Length = 1414

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 240  PNICIYVTHNLNYQH*LSIRKSFIKSS 160
            P+IC  +  + NYQH L + +SF KS+
Sbjct: 1056 PSICNQLITSANYQHQLEMIRSFNKSN 1082


>05_01_0315 -
           2468267-2468293,2469021-2469070,2469159-2469234,
           2469498-2469575,2469967-2470048,2470146-2470238,
           2470564-2470673,2470831-2470893,2471293-2471344,
           2471421-2471545,2472681-2472794,2472917-2472961,
           2473278-2473337,2474725-2474778,2474944-2474992,
           2475071-2475252,2475349-2475404,2475491-2475584
          Length = 469

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = +3

Query: 312 CRMFFFYILY*LIIDGINCLSSRLLDKIFGTFLCFSFEMFYVKKKKNF 455
           C M    + Y +   GI  L SR+L K     L F F  FYV  KK++
Sbjct: 417 CLMVANLVGYVVGPSGIKLLMSRMLGKDALPVLAFIFISFYVGVKKSY 464


>02_05_0528 -
           29782382-29782864,29782994-29783092,29783319-29783387,
           29783781-29783888,29783965-29784274,29784772-29784812,
           29784886-29784942,29785290-29785448,29785587-29785655,
           29785728-29785877,29785967-29786098,29786347-29786433,
           29786516-29786686,29786760-29786960,29787348-29787416,
           29787510-29787618,29787887-29788005,29788676-29788780,
           29789377-29789755,29790022-29790150,29790223-29790402,
           29791310-29791469,29791604-29791744,29791832-29792021,
           29792100-29792161,29792879-29793107
          Length = 1335

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -2

Query: 300 KLYRSPNEKLFNINQFISRSPNICIYVTHNL 208
           +L  SP + + ++ QF+  +P  C Y  ++L
Sbjct: 95  ELQLSPGDSVIDVKQFLLDAPETCFYTCYDL 125


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,617,471
Number of Sequences: 37544
Number of extensions: 267273
Number of successful extensions: 418
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)