BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0549 (643 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 02_05_0056 + 25461423-25461708,25461986-25462026,25466047-254660... 29 4.1 07_01_0464 - 3504264-3504475,3504842-3505031,3505310-3505408,350... 27 9.6 05_01_0315 - 2468267-2468293,2469021-2469070,2469159-2469234,246... 27 9.6 02_05_0528 - 29782382-29782864,29782994-29783092,29783319-297833... 27 9.6 >02_05_0056 + 25461423-25461708,25461986-25462026,25466047-25466083, 25466451-25466594,25466882-25466974,25467067-25467155, 25467241-25467537,25467629-25467765,25467860-25467952, 25468061-25468166,25468243-25468395 Length = 491 Score = 28.7 bits (61), Expect = 4.1 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 2/71 (2%) Frame = -3 Query: 473 PEPAYWEVFFFFYIKHFKRKAQKCSEDF--VQQSA**TIYPINNQLIQNIKKKHPTKSSR 300 P PA+ + + F + FKR Q S DF +S P ++ I + K+ P ++ Sbjct: 165 PNPAFSDDAYIFLLNWFKRFPQYKSHDFYIAGESYAGHYVPQLSEKIFDGNKQGPKENYI 224 Query: 299 NFTGLLMKNYL 267 NF G ++ N L Sbjct: 225 NFKGFMIGNAL 235 >07_01_0464 - 3504264-3504475,3504842-3505031,3505310-3505408, 3505561-3505653,3505926-3506891,3507267-3507485, 3508038-3508247,3508371-3508630,3508956-3510737, 3510796-3511009 Length = 1414 Score = 27.5 bits (58), Expect = 9.6 Identities = 12/27 (44%), Positives = 18/27 (66%) Frame = -2 Query: 240 PNICIYVTHNLNYQH*LSIRKSFIKSS 160 P+IC + + NYQH L + +SF KS+ Sbjct: 1056 PSICNQLITSANYQHQLEMIRSFNKSN 1082 >05_01_0315 - 2468267-2468293,2469021-2469070,2469159-2469234, 2469498-2469575,2469967-2470048,2470146-2470238, 2470564-2470673,2470831-2470893,2471293-2471344, 2471421-2471545,2472681-2472794,2472917-2472961, 2473278-2473337,2474725-2474778,2474944-2474992, 2475071-2475252,2475349-2475404,2475491-2475584 Length = 469 Score = 27.5 bits (58), Expect = 9.6 Identities = 18/48 (37%), Positives = 23/48 (47%) Frame = +3 Query: 312 CRMFFFYILY*LIIDGINCLSSRLLDKIFGTFLCFSFEMFYVKKKKNF 455 C M + Y + GI L SR+L K L F F FYV KK++ Sbjct: 417 CLMVANLVGYVVGPSGIKLLMSRMLGKDALPVLAFIFISFYVGVKKSY 464 >02_05_0528 - 29782382-29782864,29782994-29783092,29783319-29783387, 29783781-29783888,29783965-29784274,29784772-29784812, 29784886-29784942,29785290-29785448,29785587-29785655, 29785728-29785877,29785967-29786098,29786347-29786433, 29786516-29786686,29786760-29786960,29787348-29787416, 29787510-29787618,29787887-29788005,29788676-29788780, 29789377-29789755,29790022-29790150,29790223-29790402, 29791310-29791469,29791604-29791744,29791832-29792021, 29792100-29792161,29792879-29793107 Length = 1335 Score = 27.5 bits (58), Expect = 9.6 Identities = 9/31 (29%), Positives = 18/31 (58%) Frame = -2 Query: 300 KLYRSPNEKLFNINQFISRSPNICIYVTHNL 208 +L SP + + ++ QF+ +P C Y ++L Sbjct: 95 ELQLSPGDSVIDVKQFLLDAPETCFYTCYDL 125 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,617,471 Number of Sequences: 37544 Number of extensions: 267273 Number of successful extensions: 418 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 416 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 418 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1584867848 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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