BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0548 (616 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 27 2.8 SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S... 27 2.8 SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 5.0 SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 26 5.0 SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 8.7 >SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces pombe|chr 3|||Manual Length = 401 Score = 26.6 bits (56), Expect = 2.8 Identities = 11/36 (30%), Positives = 18/36 (50%) Frame = -2 Query: 201 CYILVLPRTALHVHHMKAR*HISSCALITEYSTGVH 94 CY+ + + + H K R + C + +YSTG H Sbjct: 223 CYVSQNFKEDMEICHEKPRSKLEICYALPDYSTGKH 258 >SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit Spo6|Schizosaccharomyces pombe|chr 2|||Manual Length = 474 Score = 26.6 bits (56), Expect = 2.8 Identities = 13/45 (28%), Positives = 26/45 (57%) Frame = -1 Query: 352 TVVPSNSICNSGSRSLCIELIKEWSTDVGTS*RRSYYPETSLEYF 218 T++ S+S+ N+ + C++ + + GTS + Y P ++EYF Sbjct: 208 TLLNSDSLVNTSAS--CLQSLLDGEKVYGTSDKDFYVPSKNVEYF 250 >SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual Length = 1611 Score = 25.8 bits (54), Expect = 5.0 Identities = 12/32 (37%), Positives = 14/32 (43%) Frame = -2 Query: 102 GVHEPKRAGTSQGMKVACLATLPLHEPRASHS 7 G+ PK AG V A P+ PR HS Sbjct: 661 GIDPPKEAGAGATADVESAANSPITPPRTWHS 692 >SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc1|Schizosaccharomyces pombe|chr 2|||Manual Length = 934 Score = 25.8 bits (54), Expect = 5.0 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = -1 Query: 439 DRRKKPLQPSQEWTP*WNPLALSPQTRHRTVV 344 D KK QPSQ WT + P +L ++ VV Sbjct: 349 DSNKKESQPSQIWTSKYAPTSLKDICGNKGVV 380 >SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosaccharomyces pombe|chr 2|||Manual Length = 2609 Score = 25.0 bits (52), Expect = 8.7 Identities = 12/44 (27%), Positives = 20/44 (45%) Frame = +3 Query: 288 LMSSMHKEREPELHIEFDGTTVLCRVCGDKASGFHYGVHSCEGC 419 + S M + +H+E D T+ LC +C + S + C C Sbjct: 2533 VFSWMLPDTTSNVHLEKDNTSELCSLCDSRFSLMEWR-SQCRAC 2575 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,539,545 Number of Sequences: 5004 Number of extensions: 50001 Number of successful extensions: 142 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 139 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 142 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 269634532 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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