Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0548
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po...    27   2.8  
SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S...    27   2.8  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   5.0  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    26   5.0  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   8.7  

>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 401

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -2

Query: 201 CYILVLPRTALHVHHMKAR*HISSCALITEYSTGVH 94
           CY+    +  + + H K R  +  C  + +YSTG H
Sbjct: 223 CYVSQNFKEDMEICHEKPRSKLEICYALPDYSTGKH 258


>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
           Spo6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = -1

Query: 352 TVVPSNSICNSGSRSLCIELIKEWSTDVGTS*RRSYYPETSLEYF 218
           T++ S+S+ N+ +   C++ + +     GTS +  Y P  ++EYF
Sbjct: 208 TLLNSDSLVNTSAS--CLQSLLDGEKVYGTSDKDFYVPSKNVEYF 250


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = -2

Query: 102 GVHEPKRAGTSQGMKVACLATLPLHEPRASHS 7
           G+  PK AG      V   A  P+  PR  HS
Sbjct: 661 GIDPPKEAGAGATADVESAANSPITPPRTWHS 692


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 439 DRRKKPLQPSQEWTP*WNPLALSPQTRHRTVV 344
           D  KK  QPSQ WT  + P +L     ++ VV
Sbjct: 349 DSNKKESQPSQIWTSKYAPTSLKDICGNKGVV 380


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +3

Query: 288  LMSSMHKEREPELHIEFDGTTVLCRVCGDKASGFHYGVHSCEGC 419
            + S M  +    +H+E D T+ LC +C  + S   +    C  C
Sbjct: 2533 VFSWMLPDTTSNVHLEKDNTSELCSLCDSRFSLMEWR-SQCRAC 2575


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,539,545
Number of Sequences: 5004
Number of extensions: 50001
Number of successful extensions: 142
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)