Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0548
(616 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0398 + 8559332-8559718,8561264-8561386,8561537-8561581,856... 29 3.9
01_06_0515 - 29959149-29959253,29959510-29959633,29959702-299597... 29 3.9
07_03_0419 - 17993478-17993777,17994045-17994195,17994799-179950... 28 5.1
02_03_0204 - 16369800-16371758,16372260-16372331 28 5.1
11_04_0282 - 15748713-15748764,15749213-15749293,15749439-157495... 28 6.8
04_04_1535 + 34205426-34205593,34205697-34206869 28 6.8
01_01_0233 - 1957104-1958041,1958213-1958467,1959420-1960136,196... 28 6.8
11_06_0623 - 25607386-25607569,25608040-25608182,25608262-256085... 27 8.9
09_01_0044 + 796237-796327,797025-797079,798129-798639 27 8.9
07_01_1207 + 11511754-11513865 27 8.9
>09_02_0398 +
8559332-8559718,8561264-8561386,8561537-8561581,
8562215-8562290,8562398-8562510,8562774-8562821,
8563101-8563229
Length = 306
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 249 LRRYDVPTSVDHSLMSSMHKEREPELHIEFDGTTVLCRVCGDKASGFHY 395
+RR + +DH++ M E L + V CR+CGD +SG +
Sbjct: 158 VRRTIFVSDIDHTVTEDMLAE----LFGSYCSVVVDCRICGDHSSGLRF 202
>01_06_0515 -
29959149-29959253,29959510-29959633,29959702-29959793,
29959921-29960003,29960573-29960654,29960707-29960784,
29960875-29960967,29961647-29961734,29961822-29961991
Length = 304
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +3
Query: 351 VLCRVCGDKAS-GFHYGVHSCEGCKGFFRRSI 443
+LC CG + FH H C+ CK + R I
Sbjct: 273 ILCNDCGATSEVQFHLIAHKCQKCKSYNTRQI 304
>07_03_0419 -
17993478-17993777,17994045-17994195,17994799-17995036,
17995133-17995343,17995440-17995618,17995735-17995833,
17996646-17997531
Length = 687
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -2
Query: 561 LLIPTAMHFFSRQYWHRFC*S*GYYTAGSSCRAGI 457
LL+P A W +C S G YTAGS +A +
Sbjct: 14 LLLPLAAIASGDPPWQHYCGSSGNYTAGSKYQANL 48
>02_03_0204 - 16369800-16371758,16372260-16372331
Length = 676
Score = 28.3 bits (60), Expect = 5.1
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = -1
Query: 604 RFLAFGYTTESHSISAHSDGDAFF 533
R++A GY +++HS+SA G+++F
Sbjct: 132 RWVAEGYISKTHSLSAEEVGESYF 155
>11_04_0282 -
15748713-15748764,15749213-15749293,15749439-15749522,
15749623-15749788,15751098-15751245
Length = 176
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -1
Query: 442 IDRRKKPLQPSQEWTP*WNPL 380
I R + L PSQ+W P W PL
Sbjct: 25 IIRLQHHLDPSQQWPPLWQPL 45
>04_04_1535 + 34205426-34205593,34205697-34206869
Length = 446
Score = 27.9 bits (59), Expect = 6.8
Identities = 20/75 (26%), Positives = 34/75 (45%)
Frame = -1
Query: 379 ALSPQTRHRTVVPSNSICNSGSRSLCIELIKEWSTDVGTS*RRSYYPETSLEYF*QQCSM 200
AL+ + + + S++ +S R C+EL++ DV R + P + +C+
Sbjct: 345 ALAKTGKLQNLSLSDNYFHSVGRRHCLELVRSKVLDV----RLNCIPNFPHQRPALECAR 400
Query: 199 LYISPPPHCTARTPH 155
Y PP HC PH
Sbjct: 401 FYADPPQHCPF-VPH 414
>01_01_0233 -
1957104-1958041,1958213-1958467,1959420-1960136,
1960728-1961403
Length = 861
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 432 RRSIQQKIQYRPCTKNQQCSILRINRIGASIAD*KNASPSE*AEMLCDSVVY 587
R I++ ++ C KN +C ++N KNASP E + +L DS+ Y
Sbjct: 795 RPPIKEVVEVLNCIKNGECPAEKMN---------KNASPKEDSHLLKDSLQY 837
>11_06_0623 -
25607386-25607569,25608040-25608182,25608262-25608513,
25609239-25609754
Length = 364
Score = 27.5 bits (58), Expect = 8.9
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +3
Query: 375 KASGFHYGVHSCEG 416
K SGF+YGV++C G
Sbjct: 303 KGSGFYYGVYNCSG 316
>09_01_0044 + 796237-796327,797025-797079,798129-798639
Length = 218
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/54 (25%), Positives = 21/54 (38%)
Frame = +1
Query: 451 RYNTGPARRTSSVVSSGLTESVPVLPTEKMHRRRNEQRCCAIRSCTQTRESAYP 612
R G R T++ S+ + PT + R + +RCC C T P
Sbjct: 130 RGKEGEGRVTATTSSAAPQPLISFHPTNRSGRGKGRRRCCRHSLCCSTATDLLP 183
>07_01_1207 + 11511754-11513865
Length = 703
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -1
Query: 616 CEDTRFLAFGYTTESHSISAHSDGDAFFQS 527
C + R L G H+ A DG+ FFQ+
Sbjct: 183 CAEARELVLGRAVHMHAAGAGMDGNLFFQN 212
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,617,917
Number of Sequences: 37544
Number of extensions: 368950
Number of successful extensions: 972
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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