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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0548
         (616 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0398 + 8559332-8559718,8561264-8561386,8561537-8561581,856...    29   3.9  
01_06_0515 - 29959149-29959253,29959510-29959633,29959702-299597...    29   3.9  
07_03_0419 - 17993478-17993777,17994045-17994195,17994799-179950...    28   5.1  
02_03_0204 - 16369800-16371758,16372260-16372331                       28   5.1  
11_04_0282 - 15748713-15748764,15749213-15749293,15749439-157495...    28   6.8  
04_04_1535 + 34205426-34205593,34205697-34206869                       28   6.8  
01_01_0233 - 1957104-1958041,1958213-1958467,1959420-1960136,196...    28   6.8  
11_06_0623 - 25607386-25607569,25608040-25608182,25608262-256085...    27   8.9  
09_01_0044 + 796237-796327,797025-797079,798129-798639                 27   8.9  
07_01_1207 + 11511754-11513865                                         27   8.9  

>09_02_0398 +
           8559332-8559718,8561264-8561386,8561537-8561581,
           8562215-8562290,8562398-8562510,8562774-8562821,
           8563101-8563229
          Length = 306

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +3

Query: 249 LRRYDVPTSVDHSLMSSMHKEREPELHIEFDGTTVLCRVCGDKASGFHY 395
           +RR    + +DH++   M  E    L   +    V CR+CGD +SG  +
Sbjct: 158 VRRTIFVSDIDHTVTEDMLAE----LFGSYCSVVVDCRICGDHSSGLRF 202


>01_06_0515 -
           29959149-29959253,29959510-29959633,29959702-29959793,
           29959921-29960003,29960573-29960654,29960707-29960784,
           29960875-29960967,29961647-29961734,29961822-29961991
          Length = 304

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +3

Query: 351 VLCRVCGDKAS-GFHYGVHSCEGCKGFFRRSI 443
           +LC  CG  +   FH   H C+ CK +  R I
Sbjct: 273 ILCNDCGATSEVQFHLIAHKCQKCKSYNTRQI 304


>07_03_0419 -
           17993478-17993777,17994045-17994195,17994799-17995036,
           17995133-17995343,17995440-17995618,17995735-17995833,
           17996646-17997531
          Length = 687

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 561 LLIPTAMHFFSRQYWHRFC*S*GYYTAGSSCRAGI 457
           LL+P A        W  +C S G YTAGS  +A +
Sbjct: 14  LLLPLAAIASGDPPWQHYCGSSGNYTAGSKYQANL 48


>02_03_0204 - 16369800-16371758,16372260-16372331
          Length = 676

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 10/24 (41%), Positives = 19/24 (79%)
 Frame = -1

Query: 604 RFLAFGYTTESHSISAHSDGDAFF 533
           R++A GY +++HS+SA   G+++F
Sbjct: 132 RWVAEGYISKTHSLSAEEVGESYF 155


>11_04_0282 -
           15748713-15748764,15749213-15749293,15749439-15749522,
           15749623-15749788,15751098-15751245
          Length = 176

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 442 IDRRKKPLQPSQEWTP*WNPL 380
           I R +  L PSQ+W P W PL
Sbjct: 25  IIRLQHHLDPSQQWPPLWQPL 45


>04_04_1535 + 34205426-34205593,34205697-34206869
          Length = 446

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 20/75 (26%), Positives = 34/75 (45%)
 Frame = -1

Query: 379 ALSPQTRHRTVVPSNSICNSGSRSLCIELIKEWSTDVGTS*RRSYYPETSLEYF*QQCSM 200
           AL+   + + +  S++  +S  R  C+EL++    DV    R +  P    +    +C+ 
Sbjct: 345 ALAKTGKLQNLSLSDNYFHSVGRRHCLELVRSKVLDV----RLNCIPNFPHQRPALECAR 400

Query: 199 LYISPPPHCTARTPH 155
            Y  PP HC    PH
Sbjct: 401 FYADPPQHCPF-VPH 414


>01_01_0233 -
           1957104-1958041,1958213-1958467,1959420-1960136,
           1960728-1961403
          Length = 861

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +3

Query: 432 RRSIQQKIQYRPCTKNQQCSILRINRIGASIAD*KNASPSE*AEMLCDSVVY 587
           R  I++ ++   C KN +C   ++N         KNASP E + +L DS+ Y
Sbjct: 795 RPPIKEVVEVLNCIKNGECPAEKMN---------KNASPKEDSHLLKDSLQY 837


>11_06_0623 -
           25607386-25607569,25608040-25608182,25608262-25608513,
           25609239-25609754
          Length = 364

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 375 KASGFHYGVHSCEG 416
           K SGF+YGV++C G
Sbjct: 303 KGSGFYYGVYNCSG 316


>09_01_0044 + 796237-796327,797025-797079,798129-798639
          Length = 218

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/54 (25%), Positives = 21/54 (38%)
 Frame = +1

Query: 451 RYNTGPARRTSSVVSSGLTESVPVLPTEKMHRRRNEQRCCAIRSCTQTRESAYP 612
           R   G  R T++  S+     +   PT +  R +  +RCC    C  T     P
Sbjct: 130 RGKEGEGRVTATTSSAAPQPLISFHPTNRSGRGKGRRRCCRHSLCCSTATDLLP 183


>07_01_1207 + 11511754-11513865
          Length = 703

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -1

Query: 616 CEDTRFLAFGYTTESHSISAHSDGDAFFQS 527
           C + R L  G     H+  A  DG+ FFQ+
Sbjct: 183 CAEARELVLGRAVHMHAAGAGMDGNLFFQN 212


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,617,917
Number of Sequences: 37544
Number of extensions: 368950
Number of successful extensions: 972
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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