Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0548
(616 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12110| Best HMM Match : No HMM Matches (HMM E-Value=.) 77 9e-15
SB_18088| Best HMM Match : zf-C4 (HMM E-Value=7.56701e-44) 73 2e-13
SB_12318| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 2e-12
SB_58028| Best HMM Match : zf-C4 (HMM E-Value=0) 65 4e-11
SB_14472| Best HMM Match : No HMM Matches (HMM E-Value=.) 65 5e-11
SB_56305| Best HMM Match : zf-C4 (HMM E-Value=0) 64 9e-11
SB_20447| Best HMM Match : zf-C4 (HMM E-Value=2.09999e-41) 63 2e-10
SB_58064| Best HMM Match : No HMM Matches (HMM E-Value=.) 63 2e-10
SB_30131| Best HMM Match : zf-C4 (HMM E-Value=8.39938e-42) 63 2e-10
SB_58027| Best HMM Match : zf-C4 (HMM E-Value=0) 63 2e-10
SB_9970| Best HMM Match : zf-C4 (HMM E-Value=9.4e-38) 62 5e-10
SB_36879| Best HMM Match : Hormone_recep (HMM E-Value=0) 60 1e-09
SB_4250| Best HMM Match : zf-C4 (HMM E-Value=2.3e-39) 58 4e-09
SB_10105| Best HMM Match : zf-C4 (HMM E-Value=3.60001e-40) 56 2e-08
SB_51757| Best HMM Match : Hormone_recep (HMM E-Value=6.4e-37) 55 4e-08
SB_33135| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 8e-06
SB_32228| Best HMM Match : zf-C4 (HMM E-Value=6.2e-23) 42 3e-04
SB_8164| Best HMM Match : rve (HMM E-Value=0.00069) 29 2.3
SB_30743| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_31470| Best HMM Match : SAND (HMM E-Value=5e-37) 29 4.0
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11) 29 4.0
SB_31032| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_43665| Best HMM Match : Thioredoxin (HMM E-Value=0.019) 28 6.9
SB_38607| Best HMM Match : Gelsolin (HMM E-Value=0.0024) 28 6.9
SB_36311| Best HMM Match : Pox_A32 (HMM E-Value=0.16) 28 6.9
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_6891| Best HMM Match : Bac_chlorC (HMM E-Value=3.7) 28 6.9
SB_6884| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_39464| Best HMM Match : 7tm_1 (HMM E-Value=4e-39) 28 6.9
SB_13543| Best HMM Match : DUF1020 (HMM E-Value=0.44) 28 6.9
SB_7171| Best HMM Match : Nodulin_late (HMM E-Value=0.25) 28 6.9
>SB_12110| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 360
Score = 77.4 bits (182), Expect = 9e-15
Identities = 29/53 (54%), Positives = 43/53 (81%)
Frame = +3
Query: 354 LCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQKIQYRPCTKNQQCSILRINRI 512
+C +CGD++SGFHYGV SCEGCK FF+R++Q+++QY C +++ C I + NRI
Sbjct: 13 VCAICGDRSSGFHYGVQSCEGCKSFFKRTVQKQLQY-ACVESKSCQIDKNNRI 64
Score = 42.7 bits (96), Expect = 2e-04
Identities = 16/26 (61%), Positives = 21/26 (80%)
Frame = +2
Query: 512 RCQYCRLKKCIAVGMSRDAVRFGRVP 589
RCQYCR +KC+A+GM ++AVR R P
Sbjct: 65 RCQYCRFQKCLALGMLKEAVREDRAP 90
>SB_18088| Best HMM Match : zf-C4 (HMM E-Value=7.56701e-44)
Length = 1220
Score = 72.9 bits (171), Expect = 2e-13
Identities = 32/77 (41%), Positives = 48/77 (62%)
Frame = +3
Query: 264 VPTSVDHSLMSSMHKEREPELHIEFDGTTVLCRVCGDKASGFHYGVHSCEGCKGFFRRSI 443
+ +D + S +E +P+ G C VC DKA+G+HYGV +CEGCKGFF+R++
Sbjct: 798 ITPKIDPTSPKSEEQETKPQ------GAPPACVVCNDKATGYHYGVFTCEGCKGFFKRTV 851
Query: 444 QQKIQYRPCTKNQQCSI 494
Q++++Y C NQ C I
Sbjct: 852 QKQLEY-TCRGNQDCDI 867
Score = 35.9 bits (79), Expect = 0.026
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 506 QNRCQYCRLKKCIAVGMSRDAVRF 577
+NRCQYCR +KC+ GM + + F
Sbjct: 872 RNRCQYCRFEKCVKSGMLKQGMSF 895
>SB_12318| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 420
Score = 69.3 bits (162), Expect = 2e-12
Identities = 30/60 (50%), Positives = 44/60 (73%), Gaps = 2/60 (3%)
Frame = +3
Query: 351 VLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQKIQYRPCTKNQQC--SILRINRIGASI 524
VLCRVCGD++SG HYGV +C+GC+GFF+RSI++ + Y C + +C + R N+ AS+
Sbjct: 21 VLCRVCGDRSSGKHYGVFTCDGCRGFFKRSIRRNLTYH-CKELGKCVVDVARRNQCPASV 79
>SB_58028| Best HMM Match : zf-C4 (HMM E-Value=0)
Length = 438
Score = 65.3 bits (152), Expect = 4e-11
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Frame = +3
Query: 267 PTSVDHSLMSSMHKEREPELHIEFDGTTVL--CRVCGDKASGFHYGVHSCEGCKGFFRRS 440
P +V+ S S + +P+ + C VCGDK+SG HYGV++CEGCK FF+RS
Sbjct: 47 PDTVESSHPSEDFSDNDPDSPASSSSKPLYIDCAVCGDKSSGKHYGVYTCEGCKSFFKRS 106
Query: 441 IQQKIQYRPCTKNQQCSILRINR 509
I++ + Y C + C + NR
Sbjct: 107 IRRSLSY-SCRGVRNCPVDIQNR 128
Score = 50.0 bits (114), Expect = 1e-06
Identities = 22/34 (64%), Positives = 27/34 (79%), Gaps = 2/34 (5%)
Frame = +2
Query: 494 PQD*QNR--CQYCRLKKCIAVGMSRDAVRFGRVP 589
P D QNR CQYCRLKKC+ VGM ++AV+ GR+P
Sbjct: 122 PVDIQNRNQCQYCRLKKCLKVGMRKEAVQKGRIP 155
>SB_14472| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 64.9 bits (151), Expect = 5e-11
Identities = 26/48 (54%), Positives = 35/48 (72%)
Frame = +3
Query: 351 VLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQKIQYRPCTKNQQCSI 494
V C VCGDK+SG HYGV +CEGCK FF+RS+++ + Y C ++ C I
Sbjct: 241 VECAVCGDKSSGKHYGVFTCEGCKSFFKRSVRRNLTY-TCRASRDCPI 287
Score = 50.4 bits (115), Expect = 1e-06
Identities = 19/28 (67%), Positives = 25/28 (89%)
Frame = +2
Query: 506 QNRCQYCRLKKCIAVGMSRDAVRFGRVP 589
+N+CQYCRLKKC+ VGM R+AV+ GR+P
Sbjct: 292 RNQCQYCRLKKCLKVGMRREAVQRGRIP 319
>SB_56305| Best HMM Match : zf-C4 (HMM E-Value=0)
Length = 553
Score = 64.1 bits (149), Expect = 9e-11
Identities = 27/52 (51%), Positives = 35/52 (67%)
Frame = +3
Query: 354 LCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQKIQYRPCTKNQQCSILRINR 509
+C +C DKA+G HYGV SCEGCKGFF+RS+Q K Y + C I + +R
Sbjct: 197 ICAICLDKATGQHYGVTSCEGCKGFFKRSVQNKKDYTCRNLTKDCPIDKRHR 248
Score = 44.0 bits (99), Expect = 1e-04
Identities = 17/28 (60%), Positives = 21/28 (75%)
Frame = +2
Query: 506 QNRCQYCRLKKCIAVGMSRDAVRFGRVP 589
+NRCQYCR +KCI GM ++AVR R P
Sbjct: 248 RNRCQYCRFQKCIQAGMIKEAVREDRTP 275
>SB_20447| Best HMM Match : zf-C4 (HMM E-Value=2.09999e-41)
Length = 419
Score = 63.3 bits (147), Expect = 2e-10
Identities = 24/51 (47%), Positives = 37/51 (72%)
Frame = +3
Query: 357 CRVCGDKASGFHYGVHSCEGCKGFFRRSIQQKIQYRPCTKNQQCSILRINR 509
C+VCGD +G HYGV +CEGCKGFF+R++++ + Y C + C I +++R
Sbjct: 42 CKVCGDNGTGKHYGVVACEGCKGFFKRTVRKNLIY-TCRGSNDCFIDKVHR 91
Score = 31.1 bits (67), Expect = 0.74
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 506 QNRCQYCRLKKCIAVGMSRD 565
+NRCQ CR KC+ GM ++
Sbjct: 91 RNRCQKCRFVKCLTAGMKKE 110
>SB_58064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1027
Score = 63.3 bits (147), Expect = 2e-10
Identities = 25/52 (48%), Positives = 37/52 (71%)
Frame = +3
Query: 354 LCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQKIQYRPCTKNQQCSILRINR 509
+C VC D+ASG HYGV +CEGCKGFF+RS+++ + Y C + C + ++ R
Sbjct: 736 ICLVCNDRASGRHYGVMTCEGCKGFFKRSVRRNMVYH-CMFRETCIVDKVLR 786
Score = 42.3 bits (95), Expect = 3e-04
Identities = 16/28 (57%), Positives = 22/28 (78%)
Frame = +2
Query: 506 QNRCQYCRLKKCIAVGMSRDAVRFGRVP 589
+NRCQ CR+ KC+AVGM + AV++ R P
Sbjct: 786 RNRCQKCRMDKCLAVGMQKSAVQYERRP 813
>SB_30131| Best HMM Match : zf-C4 (HMM E-Value=8.39938e-42)
Length = 311
Score = 63.3 bits (147), Expect = 2e-10
Identities = 24/48 (50%), Positives = 36/48 (75%)
Frame = +3
Query: 351 VLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQKIQYRPCTKNQQCSI 494
+LC+VCGD +SG HYGV++C+GC GFF RS+++ + Y C N C++
Sbjct: 33 ILCKVCGDISSGRHYGVYTCDGCSGFFMRSVRRDMVY-TCKGNGGCTV 79
Score = 35.5 bits (78), Expect = 0.034
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +2
Query: 506 QNRCQYCRLKKCIAVGMSRDAVRFGRVP 589
+N+CQ CR KKC+ V M+R AV+ R P
Sbjct: 84 RNQCQACRFKKCLEVKMNRFAVQQERQP 111
>SB_58027| Best HMM Match : zf-C4 (HMM E-Value=0)
Length = 396
Score = 62.9 bits (146), Expect = 2e-10
Identities = 26/53 (49%), Positives = 35/53 (66%)
Frame = +3
Query: 351 VLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQKIQYRPCTKNQQCSILRINR 509
V C VCGDK++G HYGV +CEGCK FF+R+++ Y C C+I R +R
Sbjct: 55 VACAVCGDKSTGKHYGVSTCEGCKSFFKRTVRNNTNY-TCRGQNTCAIDRNSR 106
Score = 34.3 bits (75), Expect = 0.080
Identities = 11/28 (39%), Positives = 21/28 (75%)
Frame = +2
Query: 506 QNRCQYCRLKKCIAVGMSRDAVRFGRVP 589
++RC CR +KC++ GM ++AV+ ++P
Sbjct: 106 RSRCPSCRFQKCLSTGMKKEAVQTTKLP 133
>SB_9970| Best HMM Match : zf-C4 (HMM E-Value=9.4e-38)
Length = 259
Score = 61.7 bits (143), Expect = 5e-10
Identities = 24/53 (45%), Positives = 37/53 (69%), Gaps = 2/53 (3%)
Frame = +3
Query: 357 CRVCGDKASGFHYGVHSCEGCKGFFRRSIQQKIQY--RPCTKNQQCSILRINR 509
C+VCGD++SG HYG+++C+GC GFF+RSI++ Y R C + +I+R
Sbjct: 8 CKVCGDRSSGKHYGIYACDGCSGFFKRSIRRNRSYTCRATNGKGNCPVDKIHR 60
Score = 31.9 bits (69), Expect = 0.42
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +2
Query: 506 QNRCQYCRLKKCIAVGMSRD 565
+N+C+ CRLKKC V M++D
Sbjct: 60 RNQCRSCRLKKCFDVSMNKD 79
>SB_36879| Best HMM Match : Hormone_recep (HMM E-Value=0)
Length = 358
Score = 60.1 bits (139), Expect = 1e-09
Identities = 25/54 (46%), Positives = 39/54 (72%), Gaps = 3/54 (5%)
Frame = +3
Query: 357 CRVCGDKASGFHYGVHSCEGCKGFFRRSIQQKI--QYRPCTKNQ-QCSILRINR 509
C VCGD++SG+HYG ++CEGCK FF+R++Q+ + +Y NQ QC + + +R
Sbjct: 7 CAVCGDESSGYHYGAYTCEGCKSFFKRTVQRGLVKKYSCVRSNQNQCPMDKNSR 60
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 512 RCQYCRLKKCIAVGMSRDAVR 574
+CQ CRL++C GM + VR
Sbjct: 62 KCQACRLQRCFDAGMVLNGVR 82
>SB_4250| Best HMM Match : zf-C4 (HMM E-Value=2.3e-39)
Length = 79
Score = 58.4 bits (135), Expect = 4e-09
Identities = 24/51 (47%), Positives = 33/51 (64%)
Frame = +3
Query: 357 CRVCGDKASGFHYGVHSCEGCKGFFRRSIQQKIQYRPCTKNQQCSILRINR 509
C +C D+A+G HYG SC+GCKGFFRRS+++ Y C + C I + R
Sbjct: 10 CLICADRATGKHYGASSCDGCKGFFRRSVRKNHVY-SCRFQRNCVINKDKR 59
Score = 33.1 bits (72), Expect = 0.18
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = +2
Query: 497 QD*QNRCQYCRLKKCIAVGMSRD 565
+D +N+C++CRL+KC GM ++
Sbjct: 56 KDKRNQCRFCRLRKCFRAGMKKE 78
>SB_10105| Best HMM Match : zf-C4 (HMM E-Value=3.60001e-40)
Length = 370
Score = 56.0 bits (129), Expect = 2e-08
Identities = 24/54 (44%), Positives = 34/54 (62%)
Frame = +3
Query: 348 TVLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQKIQYRPCTKNQQCSILRINR 509
T+ C VC +SG HYGV +CEGCK FF R+++ K+ Y C + C + + NR
Sbjct: 19 TIECAVCSAPSSGRHYGVFTCEGCKCFFNRTVRYKLTY-ICEGSGSCRVDKQNR 71
Score = 41.1 bits (92), Expect = 7e-04
Identities = 20/33 (60%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Frame = +2
Query: 500 D*QNR--CQYCRLKKCIAVGMSRDAVRFGRVPK 592
D QNR CQ CR KKC VGM R+A+R GR K
Sbjct: 67 DKQNRTQCQACRFKKCATVGMRREAIRRGRPTK 99
>SB_51757| Best HMM Match : Hormone_recep (HMM E-Value=6.4e-37)
Length = 405
Score = 55.2 bits (127), Expect = 4e-08
Identities = 21/52 (40%), Positives = 35/52 (67%)
Frame = +3
Query: 354 LCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQKIQYRPCTKNQQCSILRINR 509
+C VCGD+++G HYGV +C+GC GFF+R+ ++++ C CS+ +R
Sbjct: 23 VCVVCGDQSTGKHYGVFACDGCSGFFKRT-SRRLEPWVCKAQNACSVKTTSR 73
Score = 34.3 bits (75), Expect = 0.080
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +2
Query: 506 QNRCQYCRLKKCIAVGMSRDAVRFGRVP 589
+N C+ CR+KKC+ VGM D GRVP
Sbjct: 73 RNECKACRMKKCVEVGMKFD----GRVP 96
>SB_33135| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 47.6 bits (108), Expect = 8e-06
Identities = 19/34 (55%), Positives = 26/34 (76%)
Frame = +2
Query: 506 QNRCQYCRLKKCIAVGMSRDAVRFGRVPKREKAR 607
+N CQ+CR++KC+AVGM R+AV+ R EKAR
Sbjct: 73 RNSCQFCRMRKCLAVGMKREAVQQARAQDFEKAR 106
>SB_32228| Best HMM Match : zf-C4 (HMM E-Value=6.2e-23)
Length = 300
Score = 42.3 bits (95), Expect = 3e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +2
Query: 506 QNRCQYCRLKKCIAVGMSRDAVRFGRVPKREKAR 607
+N+CQ CRL+KC + M+RDAV+ R P+ + R
Sbjct: 35 RNQCQACRLRKCFEMNMNRDAVQHERAPRTSQIR 68
Score = 37.1 bits (82), Expect = 0.011
Identities = 12/30 (40%), Positives = 22/30 (73%)
Frame = +3
Query: 405 SCEGCKGFFRRSIQQKIQYRPCTKNQQCSI 494
+C+GC+GFF+RS+++ + Y+ C + C I
Sbjct: 2 TCDGCRGFFKRSVRRNLAYQ-CKEKNDCPI 30
>SB_8164| Best HMM Match : rve (HMM E-Value=0.00069)
Length = 1117
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 255 RYDVPTSVDHSLMSSMHKEREPELHIEFDGTTVLCRVCGDKAS 383
RYDV + + +S + KE E I+ + LC GDKA+
Sbjct: 84 RYDVFKTYEEIYLSKVEKEDRLEQGIQSENMRKLCSKAGDKAT 126
>SB_30743| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 185
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +3
Query: 222 YSSDVSG**LRRYDVPTSVDHSLMSSMHKEREPELHIEFD 341
++S +SG R P++VD SL + K R+P+ EFD
Sbjct: 4 HASMMSGKYSRARFTPSNVDESLFGDLKKTRDPDPVTEFD 43
>SB_31470| Best HMM Match : SAND (HMM E-Value=5e-37)
Length = 912
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/53 (32%), Positives = 21/53 (39%)
Frame = -1
Query: 433 RKKPLQPSQEWTP*WNPLALSPQTRHRTVVPSNSICNSGSRSLCIELIKEWST 275
R+ S W N LS + R+ T S SG R CI+ EW T
Sbjct: 154 RRDDNHKSTSWDAVINAEVLSVRCRNETAELHKSKLGSGGRGKCIKYNDEWMT 206
>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
Length = 3810
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/47 (36%), Positives = 19/47 (40%)
Frame = +3
Query: 294 SSMHKEREPELHIEFDGTTVLCRVCGDKASGFHYGVHSCEGCKGFFR 434
SS H + H + C CG AS H G SCE C G R
Sbjct: 3607 SSQHCRPCAKDHFNHKQAQIACFKCGTGASAPHLGSASCE-CSGLNR 3652
>SB_31032| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1008
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 255 RYDVPTSVDHSLMSSMHKEREPELHIEFDGTTVLCRVCGDKAS 383
RYDV + + +S + +E E I+ + LC GDKA+
Sbjct: 106 RYDVFKTYEELYLSKVEREDRLEQGIQSENMRKLCSKAGDKAT 148
>SB_43665| Best HMM Match : Thioredoxin (HMM E-Value=0.019)
Length = 415
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +3
Query: 375 KASGFHYGVHSCEGCKGFFRRSIQQKIQYRPCTKN 479
K G ++ H C C+GF + ++ YR T N
Sbjct: 30 KIVGLYFSAHWCPPCRGFTPKLVEFYQNYRSKTNN 64
>SB_38607| Best HMM Match : Gelsolin (HMM E-Value=0.0024)
Length = 693
Score = 27.9 bits (59), Expect = 6.9
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +3
Query: 351 VLCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQK-IQYRPCTKNQQCSILRINRIG 515
VLC+ C G Y H + C+ RSI+ K I KN C IL I ++G
Sbjct: 629 VLCQQCWQMLVGVAYQEHLAQNCRFCQTRSIRYKEINIFLIWKN--CMILVIFKVG 682
>SB_36311| Best HMM Match : Pox_A32 (HMM E-Value=0.16)
Length = 869
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 255 RYDVPTSVDHSLMSSMHKEREPELHIEFDGTTVLCRVCGDKAS 383
RYDV + + +S + +E E I+ + LC GDKA+
Sbjct: 33 RYDVYKTYEELYLSKVAREDRLEQGIQSENMRKLCSKAGDKAA 75
>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6753
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +3
Query: 324 LHIEFDG-TTVLCRVCGDKASGFHYGVHSCEGCKGF 428
+ + FDG T+V C + G+ S +YG++SC+ G+
Sbjct: 594 IFMAFDGCTSVPCGIGGNCTSLDNYGLYSCQCLAGY 629
>SB_6891| Best HMM Match : Bac_chlorC (HMM E-Value=3.7)
Length = 433
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 255 RYDVPTSVDHSLMSSMHKEREPELHIEFDGTTVLCRVCGDKAS 383
RYDV + + +S + +E E I+ + LC GDKA+
Sbjct: 171 RYDVYKTYEELYLSKVAREDRLEQGIQSENMRKLCSKAGDKAA 213
>SB_6884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 384
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = -1
Query: 388 NPLALSPQTRHRTVVPSNSICNSGSRSLCI 299
NPL +P+ RH+ +V ++ N+ + LC+
Sbjct: 355 NPLQKNPRRRHQVIVKFDTANNTDNSGLCL 384
>SB_39464| Best HMM Match : 7tm_1 (HMM E-Value=4e-39)
Length = 375
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -3
Query: 548 RRCIFSVGNTGTDSVNPEDTTLLVLRAGPVLYLLLY 441
R ++GN S N E+T LL+L +LYL+ Y
Sbjct: 5 RNLTAAIGNLTGPSTNIENTPLLILIGYSLLYLVTY 40
>SB_13543| Best HMM Match : DUF1020 (HMM E-Value=0.44)
Length = 850
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 255 RYDVPTSVDHSLMSSMHKEREPELHIEFDGTTVLCRVCGDKAS 383
RYDV + + +S + +E E I+ + LC GDKA+
Sbjct: 50 RYDVFKTYEELYLSKVEREDRLEQGIQSENMHKLCSKAGDKAT 92
>SB_7171| Best HMM Match : Nodulin_late (HMM E-Value=0.25)
Length = 472
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 411 EGCKGFFRRSIQQKIQYRPCTKNQQCS 491
EG GF + I +K Q R C +Q+CS
Sbjct: 195 EGILGFGKCQISKKRQLRGCANSQRCS 221
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,632,276
Number of Sequences: 59808
Number of extensions: 441002
Number of successful extensions: 1559
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1559
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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