BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0548 (616 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g44050.1 68414.m05082 DC1 domain-containing protein contains ... 31 0.46 At2g19650.1 68415.m02296 DC1 domain-containing protein contains ... 31 0.80 At2g44380.1 68415.m05520 DC1 domain-containing protein highly si... 29 1.9 At5g55800.1 68418.m06954 DC1 domain-containing protein contains ... 29 3.2 At5g22920.1 68418.m02680 zinc finger (C3HC4-type RING finger) fa... 29 3.2 At1g51930.1 68414.m05854 zinc finger (C3HC4-type RING finger) fa... 29 3.2 At2g21850.1 68415.m02596 DC1 domain-containing protein contains ... 28 5.7 At1g65180.1 68414.m07390 DC1 domain-containing protein contains ... 28 5.7 At1g12870.1 68414.m01495 S locus F-box-related / SLF-related con... 28 5.7 At3g57060.1 68416.m06353 non-SMC condensin subunit, XCAP-D2/Cnd1... 27 7.5 At2g44390.1 68415.m05521 DC1 domain-containing protein EST match... 27 7.5 At1g71080.1 68414.m08203 expressed protein 27 7.5 At4g09690.1 68417.m01592 DC1 domain-containing protein contains ... 27 9.9 At1g69150.1 68414.m07911 DC1 domain-containing protein contains ... 27 9.9 >At1g44050.1 68414.m05082 DC1 domain-containing protein contains Pfam profile PF03107: DC1 domain Length = 530 Score = 31.5 bits (68), Expect = 0.46 Identities = 16/53 (30%), Positives = 23/53 (43%) Frame = +3 Query: 282 HSLMSSMHKEREPELHIEFDGTTVLCRVCGDKASGFHYGVHSCEGCKGFFRRS 440 H++ S H R T+ C VC + +YG +SC C G+F S Sbjct: 136 HTIRISRHPHRI-SFTSSLPSRTLSCGVCHQQVDN-NYGAYSCNNCDGYFVHS 186 >At2g19650.1 68415.m02296 DC1 domain-containing protein contains Pfam profile PF03107: DC1 domain Length = 682 Score = 30.7 bits (66), Expect = 0.80 Identities = 13/28 (46%), Positives = 15/28 (53%) Frame = +3 Query: 357 CRVCGDKASGFHYGVHSCEGCKGFFRRS 440 CRVC GF YG +SC C +F S Sbjct: 341 CRVCRKNVDGF-YGAYSCSKCFDYFVHS 367 >At2g44380.1 68415.m05520 DC1 domain-containing protein highly similar to GP|2435515|AF024504; contains Pfam profile PF03107: DC1 domain Length = 247 Score = 29.5 bits (63), Expect = 1.9 Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 5/77 (6%) Frame = +3 Query: 258 YDVPTSVDHSLMSSMHKEREPELHIEFDGTTVLCRVCGDKASGFHYGVHSCE-----GCK 422 +D+P +H S LH G + C CG+ SGF Y C+ GC Sbjct: 62 FDLPRETNHK---SHPNHSLTLLHSPPYGQSYTCDACGEYGSGFTYNCSECQYDVHVGC- 117 Query: 423 GFFRRSIQQKIQYRPCT 473 F +++++ P T Sbjct: 118 AFIPETVEREDHEHPLT 134 >At5g55800.1 68418.m06954 DC1 domain-containing protein contains Pfam profile PF03107: DC1 domain Length = 578 Score = 28.7 bits (61), Expect = 3.2 Identities = 16/53 (30%), Positives = 23/53 (43%) Frame = +3 Query: 282 HSLMSSMHKEREPELHIEFDGTTVLCRVCGDKASGFHYGVHSCEGCKGFFRRS 440 H + S H R GT C VC ++ +YG ++C C G+F S Sbjct: 231 HVIRISRHHHRISFTSSLLSGT-FSCGVCREQVDN-NYGAYACNKCDGYFVHS 281 >At5g22920.1 68418.m02680 zinc finger (C3HC4-type RING finger) family protein contains Pfam profiles:PF05495 CHY zinc finger, PF00097 zinc finger, C3HC4 type (RING finger) Length = 291 Score = 28.7 bits (61), Expect = 3.2 Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 1/42 (2%) Frame = +3 Query: 351 VLCRVCGDKAS-GFHYGVHSCEGCKGFFRRSIQQKIQYRPCT 473 +LC CG + FH H C C + R Q+ C+ Sbjct: 239 ILCNDCGSNTNVRFHLIAHKCSSCGSYNTRQTQRGSDSHSCS 280 >At1g51930.1 68414.m05854 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) Length = 132 Score = 28.7 bits (61), Expect = 3.2 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = -1 Query: 385 PLALSPQTRHRTVVPSNSICNSGSRSLCIELIKE 284 P L P+T H+TV P I S++L + IKE Sbjct: 32 PTRLPPETIHQTVQPQQDIETGQSKALVFKDIKE 65 >At2g21850.1 68415.m02596 DC1 domain-containing protein contains Pfam profile PF03107: DC1 domain Length = 772 Score = 27.9 bits (59), Expect = 5.7 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 15/66 (22%) Frame = +3 Query: 348 TVLCRVCGDKASGFHYGVHSCE-----GC-----KGFFRRSIQQKIQYR-----PCTKNQ 482 T LC +CG+ +G +G C+ C +G +S ++ YR T+N Sbjct: 195 TSLCHICGESIAGVPFGCLECDFDAHLRCLDSFLRGLMHKSHPHRLIYRTKSHISFTEND 254 Query: 483 QCSILR 500 QC I R Sbjct: 255 QCQICR 260 >At1g65180.1 68414.m07390 DC1 domain-containing protein contains Pfam profile PF03107: DC1 domain Length = 653 Score = 27.9 bits (59), Expect = 5.7 Identities = 10/36 (27%), Positives = 18/36 (50%) Frame = +3 Query: 306 KEREPELHIEFDGTTVLCRVCGDKASGFHYGVHSCE 413 + + +L +E ++ C CG SG+ Y H C+ Sbjct: 122 QNHDHKLKLEMVRSSFTCFTCGKGGSGYPYKCHECD 157 >At1g12870.1 68414.m01495 S locus F-box-related / SLF-related contains F-box domain Pfam:PF00646; contains TIGRFAM TIGR01640: F-box protein interaction domain; weakly similar to self-incompatibility (S-) locus F-box (GI:29420811) [Prunus mume] Length = 416 Score = 27.9 bits (59), Expect = 5.7 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 5/57 (8%) Frame = +3 Query: 276 VDHSLMSSMHKEREPELHIEF-----DGTTVLCRVCGDKASGFHYGVHSCEGCKGFF 431 VDH + + ++ P++ I F + + L + GFH+ +++ E C G F Sbjct: 82 VDHPKVMIITEKWNPDIEISFRTISLESVSFLSSALFNFPRGFHHPIYASESCDGIF 138 >At3g57060.1 68416.m06353 non-SMC condensin subunit, XCAP-D2/Cnd1 family protein similar to 13S condensin XCAP-D2 subunit [Xenopus laevis] GI:3764087; contains Pfam profile PF04594: Non-SMC condensin subunit, XCAP-D2/Cnd1 Length = 1439 Score = 27.5 bits (58), Expect = 7.5 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = +3 Query: 354 LCRVCGDKASGFHYGVHSC 410 LCR+ G A+ +HY V SC Sbjct: 228 LCRIIGASATKYHYIVQSC 246 >At2g44390.1 68415.m05521 DC1 domain-containing protein EST matches across the predicted intron; maybe a pseudo gene; highly similar to GP|2435515|AF024504; contains Pfam profile PF03107: DC1 domain Length = 209 Score = 27.5 bits (58), Expect = 7.5 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 5/47 (10%) Frame = +3 Query: 348 TVLCRVCGDKASGFHYGVHSCE-----GCKGFFRRSIQQKIQYRPCT 473 T C CG+ SGF Y C+ GC F +++++ P T Sbjct: 52 TYTCDACGEYGSGFTYNCSECQYDLHVGC-AFIPETVEREDHEHPLT 97 >At1g71080.1 68414.m08203 expressed protein Length = 326 Score = 27.5 bits (58), Expect = 7.5 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%) Frame = +3 Query: 255 RYDV-PTSVDHSLMSSMHKEREPELHIEF 338 RY+ P S+D + SMHK+++ + +EF Sbjct: 39 RYEFKPASIDKNRSGSMHKKKDNRVSVEF 67 >At4g09690.1 68417.m01592 DC1 domain-containing protein contains Pfam profile PF03107: DC1 domain Length = 345 Score = 27.1 bits (57), Expect = 9.9 Identities = 28/100 (28%), Positives = 38/100 (38%), Gaps = 2/100 (2%) Frame = +3 Query: 120 SAHRTIYVSG--LSCGVRAVQCGGGLIYSIEHCC*KYSSDVSG**LRRYDVPTSVDHSLM 293 S H V G + G CG + ++ + C DV +Y P +D S Sbjct: 65 SIHTLTLVRGERIKRGTYCDLCGKSINVNLYYSCKICDFDVDLY-CAKYPPPEVIDISET 123 Query: 294 SSMHKEREPELHIEFDGTTVLCRVCGDKASGFHYGVHSCE 413 + HK + IEFD CG+ GF Y H CE Sbjct: 124 HN-HKLTLIKKQIEFDCDAK----CGNDGYGFRYKCHECE 158 >At1g69150.1 68414.m07911 DC1 domain-containing protein contains Pfam profile PF03107: DC1 domain Length = 517 Score = 27.1 bits (57), Expect = 9.9 Identities = 9/36 (25%), Positives = 17/36 (47%) Frame = +3 Query: 306 KEREPELHIEFDGTTVLCRVCGDKASGFHYGVHSCE 413 + + +L +E + C CG + G+ Y H C+ Sbjct: 94 QHHDHKLKLEMVKSCFSCATCGKDSDGYSYKCHECD 129 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,605,374 Number of Sequences: 28952 Number of extensions: 275542 Number of successful extensions: 808 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 739 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 808 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1236350304 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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