Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0548
         (616 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g44050.1 68414.m05082 DC1 domain-containing protein contains ...    31   0.46 
At2g19650.1 68415.m02296 DC1 domain-containing protein contains ...    31   0.80 
At2g44380.1 68415.m05520 DC1 domain-containing protein highly si...    29   1.9  
At5g55800.1 68418.m06954 DC1 domain-containing protein contains ...    29   3.2  
At5g22920.1 68418.m02680 zinc finger (C3HC4-type RING finger) fa...    29   3.2  
At1g51930.1 68414.m05854 zinc finger (C3HC4-type RING finger) fa...    29   3.2  
At2g21850.1 68415.m02596 DC1 domain-containing protein contains ...    28   5.7  
At1g65180.1 68414.m07390 DC1 domain-containing protein contains ...    28   5.7  
At1g12870.1 68414.m01495 S locus F-box-related / SLF-related con...    28   5.7  
At3g57060.1 68416.m06353 non-SMC condensin subunit, XCAP-D2/Cnd1...    27   7.5  
At2g44390.1 68415.m05521 DC1 domain-containing protein EST match...    27   7.5  
At1g71080.1 68414.m08203 expressed protein                             27   7.5  
At4g09690.1 68417.m01592 DC1 domain-containing protein contains ...    27   9.9  
At1g69150.1 68414.m07911 DC1 domain-containing protein contains ...    27   9.9  

>At1g44050.1 68414.m05082 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 530

 Score = 31.5 bits (68), Expect = 0.46
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = +3

Query: 282 HSLMSSMHKEREPELHIEFDGTTVLCRVCGDKASGFHYGVHSCEGCKGFFRRS 440
           H++  S H  R           T+ C VC  +    +YG +SC  C G+F  S
Sbjct: 136 HTIRISRHPHRI-SFTSSLPSRTLSCGVCHQQVDN-NYGAYSCNNCDGYFVHS 186


>At2g19650.1 68415.m02296 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 682

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +3

Query: 357 CRVCGDKASGFHYGVHSCEGCKGFFRRS 440
           CRVC     GF YG +SC  C  +F  S
Sbjct: 341 CRVCRKNVDGF-YGAYSCSKCFDYFVHS 367


>At2g44380.1 68415.m05520 DC1 domain-containing protein highly
           similar to GP|2435515|AF024504; contains Pfam profile
           PF03107: DC1 domain
          Length = 247

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
 Frame = +3

Query: 258 YDVPTSVDHSLMSSMHKEREPELHIEFDGTTVLCRVCGDKASGFHYGVHSCE-----GCK 422
           +D+P   +H    S        LH    G +  C  CG+  SGF Y    C+     GC 
Sbjct: 62  FDLPRETNHK---SHPNHSLTLLHSPPYGQSYTCDACGEYGSGFTYNCSECQYDVHVGC- 117

Query: 423 GFFRRSIQQKIQYRPCT 473
            F   +++++    P T
Sbjct: 118 AFIPETVEREDHEHPLT 134


>At5g55800.1 68418.m06954 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 578

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = +3

Query: 282 HSLMSSMHKEREPELHIEFDGTTVLCRVCGDKASGFHYGVHSCEGCKGFFRRS 440
           H +  S H  R         GT   C VC ++    +YG ++C  C G+F  S
Sbjct: 231 HVIRISRHHHRISFTSSLLSGT-FSCGVCREQVDN-NYGAYACNKCDGYFVHS 281


>At5g22920.1 68418.m02680 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profiles:PF05495 CHY zinc
           finger, PF00097 zinc finger, C3HC4 type (RING finger)
          Length = 291

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
 Frame = +3

Query: 351 VLCRVCGDKAS-GFHYGVHSCEGCKGFFRRSIQQKIQYRPCT 473
           +LC  CG   +  FH   H C  C  +  R  Q+      C+
Sbjct: 239 ILCNDCGSNTNVRFHLIAHKCSSCGSYNTRQTQRGSDSHSCS 280


>At1g51930.1 68414.m05854 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 132

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 385 PLALSPQTRHRTVVPSNSICNSGSRSLCIELIKE 284
           P  L P+T H+TV P   I    S++L  + IKE
Sbjct: 32  PTRLPPETIHQTVQPQQDIETGQSKALVFKDIKE 65


>At2g21850.1 68415.m02596 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 772

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 15/66 (22%)
 Frame = +3

Query: 348 TVLCRVCGDKASGFHYGVHSCE-----GC-----KGFFRRSIQQKIQYR-----PCTKNQ 482
           T LC +CG+  +G  +G   C+      C     +G   +S   ++ YR       T+N 
Sbjct: 195 TSLCHICGESIAGVPFGCLECDFDAHLRCLDSFLRGLMHKSHPHRLIYRTKSHISFTEND 254

Query: 483 QCSILR 500
           QC I R
Sbjct: 255 QCQICR 260


>At1g65180.1 68414.m07390 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 653

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +3

Query: 306 KEREPELHIEFDGTTVLCRVCGDKASGFHYGVHSCE 413
           +  + +L +E   ++  C  CG   SG+ Y  H C+
Sbjct: 122 QNHDHKLKLEMVRSSFTCFTCGKGGSGYPYKCHECD 157


>At1g12870.1 68414.m01495 S locus F-box-related / SLF-related
           contains F-box domain Pfam:PF00646; contains TIGRFAM
           TIGR01640: F-box protein interaction domain; weakly
           similar to  self-incompatibility (S-) locus F-box
           (GI:29420811) [Prunus mume]
          Length = 416

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
 Frame = +3

Query: 276 VDHSLMSSMHKEREPELHIEF-----DGTTVLCRVCGDKASGFHYGVHSCEGCKGFF 431
           VDH  +  + ++  P++ I F     +  + L     +   GFH+ +++ E C G F
Sbjct: 82  VDHPKVMIITEKWNPDIEISFRTISLESVSFLSSALFNFPRGFHHPIYASESCDGIF 138


>At3g57060.1 68416.m06353 non-SMC condensin subunit, XCAP-D2/Cnd1
           family protein similar to 13S condensin XCAP-D2 subunit
           [Xenopus laevis] GI:3764087; contains Pfam profile
           PF04594: Non-SMC condensin subunit, XCAP-D2/Cnd1
          Length = 1439

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 354 LCRVCGDKASGFHYGVHSC 410
           LCR+ G  A+ +HY V SC
Sbjct: 228 LCRIIGASATKYHYIVQSC 246


>At2g44390.1 68415.m05521 DC1 domain-containing protein EST matches
           across the predicted intron; maybe a pseudo gene; highly
           similar to GP|2435515|AF024504; contains Pfam profile
           PF03107: DC1 domain
          Length = 209

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
 Frame = +3

Query: 348 TVLCRVCGDKASGFHYGVHSCE-----GCKGFFRRSIQQKIQYRPCT 473
           T  C  CG+  SGF Y    C+     GC  F   +++++    P T
Sbjct: 52  TYTCDACGEYGSGFTYNCSECQYDLHVGC-AFIPETVEREDHEHPLT 97


>At1g71080.1 68414.m08203 expressed protein
          Length = 326

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +3

Query: 255 RYDV-PTSVDHSLMSSMHKEREPELHIEF 338
           RY+  P S+D +   SMHK+++  + +EF
Sbjct: 39  RYEFKPASIDKNRSGSMHKKKDNRVSVEF 67


>At4g09690.1 68417.m01592 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 345

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 28/100 (28%), Positives = 38/100 (38%), Gaps = 2/100 (2%)
 Frame = +3

Query: 120 SAHRTIYVSG--LSCGVRAVQCGGGLIYSIEHCC*KYSSDVSG**LRRYDVPTSVDHSLM 293
           S H    V G  +  G     CG  +  ++ + C     DV      +Y  P  +D S  
Sbjct: 65  SIHTLTLVRGERIKRGTYCDLCGKSINVNLYYSCKICDFDVDLY-CAKYPPPEVIDISET 123

Query: 294 SSMHKEREPELHIEFDGTTVLCRVCGDKASGFHYGVHSCE 413
            + HK    +  IEFD        CG+   GF Y  H CE
Sbjct: 124 HN-HKLTLIKKQIEFDCDAK----CGNDGYGFRYKCHECE 158


>At1g69150.1 68414.m07911 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 517

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = +3

Query: 306 KEREPELHIEFDGTTVLCRVCGDKASGFHYGVHSCE 413
           +  + +L +E   +   C  CG  + G+ Y  H C+
Sbjct: 94  QHHDHKLKLEMVKSCFSCATCGKDSDGYSYKCHECD 129


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,605,374
Number of Sequences: 28952
Number of extensions: 275542
Number of successful extensions: 808
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)