Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0547
         (714 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48284| Best HMM Match : HIG_1_N (HMM E-Value=5.6e-25)               38   0.011
SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.100
SB_23904| Best HMM Match : RdRP (HMM E-Value=0)                        32   0.40 
SB_47336| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_40280| Best HMM Match : C2 (HMM E-Value=1.8e-05)                    29   2.8  
SB_50202| Best HMM Match : HC2 (HMM E-Value=0.41)                      29   3.7  
SB_38212| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_23935| Best HMM Match : bZIP_Maf (HMM E-Value=0.76)                 28   6.5  
SB_5582| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.5  

>SB_48284| Best HMM Match : HIG_1_N (HMM E-Value=5.6e-25)
          Length = 103

 Score = 37.5 bits (83), Expect = 0.011
 Identities = 17/34 (50%), Positives = 24/34 (70%)
 Frame = +1

Query: 319 MSTSVFLMQFRVIAQGTVVGALTAGMMYTLYKNH 420
           MSTS ++M+ RVIAQ  VVG++  GM  T Y+ +
Sbjct: 61  MSTSRYIMRLRVIAQSCVVGSIMVGMGITAYQGN 94



 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +2

Query: 137 LPRHDKTRKMSQEKPIFDYHEESQTEKLARKSKESPFM 250
           +P   +T+++S+     +   E++TEKL RKSK  PF+
Sbjct: 1   MPIPSETKQLSESWQTRE-ERETETEKLIRKSKAQPFI 37


>SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3212

 Score = 34.3 bits (75), Expect = 0.100
 Identities = 14/31 (45%), Positives = 23/31 (74%)
 Frame = +1

Query: 337  LMQFRVIAQGTVVGALTAGMMYTLYKNHFNK 429
            +M+ RV+AQG+ + A+  G+ YT+ K+H NK
Sbjct: 3181 MMRARVLAQGSTLIAVIGGLGYTMLKDHANK 3211


>SB_23904| Best HMM Match : RdRP (HMM E-Value=0)
          Length = 1511

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +2

Query: 119  TEGRLLLPRHDKTRKMSQEKPIFDYHEESQTEKLARKSKESPFMVMVS 262
            T G  L+P  +  R+  ++KPI    E+ + +KL+ K  +S F   V+
Sbjct: 1240 TSGVRLVPHVESNRERKRKKPIRKPEEDKKVKKLSEKPTKSSFFTQVT 1287


>SB_47336| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +1

Query: 322 STSVFLMQFRVIAQGTVVGALTAGMMYTLYKN 417
           S S+++M  RV   G ++GA+  G++YT Y++
Sbjct: 190 SNSMYVMSVRVTL-GALIGAVLCGLIYTCYRD 220


>SB_40280| Best HMM Match : C2 (HMM E-Value=1.8e-05)
          Length = 485

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 137 LPRHDKTRKMSQEKPIFDYHEESQTEK 217
           LP H  +    + +PIFDY +ES+ E+
Sbjct: 43  LPEHTDSSGYQENRPIFDYLKESEEER 69


>SB_50202| Best HMM Match : HC2 (HMM E-Value=0.41)
          Length = 545

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 11/46 (23%), Positives = 24/46 (52%)
 Frame = +3

Query: 402 HSLQKPLQQAQRK*ALTRRKLI*ANFNEVPYSGFCRPRYMIKNALD 539
           H +++ +++   K    RR +I      V + G C+ RY+I+  ++
Sbjct: 217 HIIRQDIERVTHKGTCQRRHIIRQGIERVTHKGTCQRRYIIRQGIE 262



 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/46 (23%), Positives = 24/46 (52%)
 Frame = +3

Query: 402 HSLQKPLQQAQRK*ALTRRKLI*ANFNEVPYSGFCRPRYMIKNALD 539
           H +++ +++   K    RR +I      V + G C+ RY+I+  ++
Sbjct: 103 HIIRQGIERVTHKGTCQRRHIIRQGIERVTHKGTCQRRYIIRQGIE 148



 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/46 (23%), Positives = 24/46 (52%)
 Frame = +3

Query: 402 HSLQKPLQQAQRK*ALTRRKLI*ANFNEVPYSGFCRPRYMIKNALD 539
           H +++ +++   K    RR +I      V + G C+ RY+I+  ++
Sbjct: 160 HIIRQGIERVTHKGTCQRRHIIRQGIERVTHKGTCQRRYIIRQGIE 205


>SB_38212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1892

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 126  PSVEKHTVLNETPIGNTITDFTI 58
            P+V  HTV   T  G+T+TD T+
Sbjct: 1358 PTVTDHTVTGHTVTGHTVTDHTV 1380


>SB_23935| Best HMM Match : bZIP_Maf (HMM E-Value=0.76)
          Length = 715

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -1

Query: 174 SCDIFLVLSCLGNSSLPSVEKHTVLNETPIGNTITDFTIYYYPIFVISAIHCRLD 10
           S  IF  L   G  SL     HT LN+TP+ +++ D +  Y    + ++ H R D
Sbjct: 80  SVTIFPDLHHGGPFSLGGESVHTTLNDTPLHSSVIDHSPMYPQDTIRASNHDRQD 134


>SB_5582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 73 NRFHNLLLSNICNIGNPLSTRR 8
          N+ HN+++SN C+ G+PL   R
Sbjct: 19 NKCHNIVISNSCSPGDPLVLER 40


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,595,249
Number of Sequences: 59808
Number of extensions: 384057
Number of successful extensions: 888
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)