Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0547
         (714 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19870.1 68416.m02516 expressed protein                             29   4.0  
At2g37680.1 68415.m04621 phytochrome A specific signal transduct...    28   5.3  
At2g39360.1 68415.m04831 protein kinase family protein contains ...    28   7.1  
At2g29600.1 68415.m03594 kelch repeat-containing F-box family pr...    27   9.3  

>At3g19870.1 68416.m02516 expressed protein 
          Length = 1117

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 3   ETRRVDSGLPILQILDNSRL*NLLSCCRSVFHSVP 107
           E RR++SG P L+++D S++  +L   R  F  +P
Sbjct: 731 EARRIESGKPTLRVMD-SKIAEILERLRRYFSVIP 764


>At2g37680.1 68415.m04621 phytochrome A specific signal transduction
           component (PAT3) / far-red elongated hypocotyl protein 1
           (FHY1) identical to phytochrome A specific signal
           transduction component PAT3 [Arabidopsis thaliana]
           gi|19421998|gb|AAL87850; identical to far-red elongated
           hypocotyl protein 1 [Arabidopsis thaliana]
           gi|17148773|gb|AAL35819
          Length = 313

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = -1

Query: 387 SKCTDYSPLSDHSELH*ENAGTHSAATFVGVSSVAHGCDEASDTITINGDSFDLRANF 214
           SK   +SPL    E +  N GT    T  G   V   C + S    I+G  +D  ++F
Sbjct: 95  SKFPSFSPLQRWKEQYFVNVGTDCGLTIAGFYYVCFSCSDGS----ISGFYYDPNSSF 148


>At2g39360.1 68415.m04831 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 815

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 440 FPLSLLKWFL*RVYIMPAVSA 378
           FP+    WFL R+Y +P VSA
Sbjct: 90  FPIEEHGWFLIRIYFLPLVSA 110


>At2g29600.1 68415.m03594 kelch repeat-containing F-box family
           protein similar to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 415

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +2

Query: 140 PRHDKTRKMSQEKPIFDYHEESQTEKLARKSKESPFMVMVS 262
           P+  K  +   EKP  D H+E + E + +   + P  ++VS
Sbjct: 28  PQEGKEEENQNEKPKEDDHQEEEVENVPQIPPQMPLELIVS 68


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,412,017
Number of Sequences: 28952
Number of extensions: 248078
Number of successful extensions: 548
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)