Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0546
         (711 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    24   1.1  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    24   1.1  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           24   1.1  
DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory pro...    23   3.2  

>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 287 NFSIPSNKDFWSSQWRRLQQTEAQSFHWCRRHGDS 183
           NF    N +F S++   + +  A  + W + HGDS
Sbjct: 145 NFQQYDNNNF-SAEENSVSEPPANFYPWMKAHGDS 178



 Score = 21.8 bits (44), Expect = 5.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 518 SH*AEAHGNVREEPAPHKGRH*AREISLNHYFITVT 625
           +H  E +  V+EEP     R    +  LNH+  +VT
Sbjct: 40  THNNEMYHRVKEEPIYESCRFSINQPYLNHFDNSVT 75


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 287 NFSIPSNKDFWSSQWRRLQQTEAQSFHWCRRHGDS 183
           NF    N +F S++   + +  A  + W + HGDS
Sbjct: 145 NFQQYDNNNF-SAEENSVSEPPANFYPWMKAHGDS 178



 Score = 21.8 bits (44), Expect = 5.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 518 SH*AEAHGNVREEPAPHKGRH*AREISLNHYFITVT 625
           +H  E +  V+EEP     R    +  LNH+  +VT
Sbjct: 40  THNNEMYHRVKEEPIYESCRFSINQPYLNHFDNSVT 75


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 287 NFSIPSNKDFWSSQWRRLQQTEAQSFHWCRRHGDS 183
           NF    N +F S++   + +  A  + W + HGDS
Sbjct: 145 NFQQYDNNNF-SAEENSVSEPPANFYPWMKAHGDS 178



 Score = 22.2 bits (45), Expect = 4.3
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 518 SH*AEAHGNVREEPAPHKGRH*AREISLNHYFITVT 625
           +H  E + +V+EEP     R    +  LNH+  +VT
Sbjct: 40  THNNEMYHSVKEEPIYESCRFSINQPYLNHFDNSVT 75


>DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory
           protein 1 protein.
          Length = 112

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 351 CRSGESPPEPLGR 389
           C +GE+P +P+GR
Sbjct: 51  CATGEAPCDPVGR 63


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,191
Number of Sequences: 336
Number of extensions: 3069
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18843005
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)