BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0546 (711 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 27 3.5 SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 26 6.1 SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos... 25 8.1 SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 25 8.1 SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr... 25 8.1 SPAC21E11.07 ||SPAC2C4.01|glycine cleavage T-protein|Schizosacch... 25 8.1 >SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces pombe|chr 1|||Manual Length = 674 Score = 26.6 bits (56), Expect = 3.5 Identities = 13/44 (29%), Positives = 24/44 (54%) Frame = -1 Query: 249 SVATSSADGSTIFSLVSTSRRQLVLKPSS*LFRSVATLGRSFRE 118 SV + DG + + +++RQ V+ P + F + +GR F+E Sbjct: 86 SVVAFTKDGERLVGV--SAKRQAVINPENTFFATKRLIGRRFKE 127 >SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2|||Manual Length = 426 Score = 25.8 bits (54), Expect = 6.1 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = -3 Query: 256 GLLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQ 152 G ++G +S +LFIGVD G+ F LQ Sbjct: 385 GEIAGTAYSSSGDSLFIGVDDPMLGGILEFRRPLQ 419 >SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizosaccharomyces pombe|chr 2|||Manual Length = 325 Score = 25.4 bits (53), Expect = 8.1 Identities = 9/24 (37%), Positives = 16/24 (66%) Frame = -1 Query: 444 ILFFRRRVLHLSLVEVFNSVQEVL 373 I++ + + LHL LV +FN E++ Sbjct: 195 IIYLKAKELHLPLVHIFNVENEIV 218 >SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces pombe|chr 3|||Manual Length = 654 Score = 25.4 bits (53), Expect = 8.1 Identities = 11/31 (35%), Positives = 16/31 (51%) Frame = +3 Query: 27 PTESLSARIFYPLPHQKYIDSQWPAP*VTLP 119 P +SA F P+P+ Y D+ + A V P Sbjct: 144 PNMYVSANTFIPMPYAHYTDNMYHAKPVNRP 174 >SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotransferase Eca39|Schizosaccharomyces pombe|chr 2|||Manual Length = 380 Score = 25.4 bits (53), Expect = 8.1 Identities = 11/29 (37%), Positives = 16/29 (55%) Frame = +1 Query: 256 QKSLFDGIEKFDSSQLKHTETQEKNPLPD 342 Q + G + DSS +K T +E PLP+ Sbjct: 3 QTAALHGPKPMDSSHIKVTNVKELKPLPE 31 >SPAC21E11.07 ||SPAC2C4.01|glycine cleavage T-protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 325 Score = 25.4 bits (53), Expect = 8.1 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%) Frame = +2 Query: 566 HKGRH*AREISLNHYFITVTRKCI-SLVSPYFNIAVSQ-IDLRRPLQVL 706 HKG + +E+++ Y+ VTRK I + P + SQ I+ PL ++ Sbjct: 215 HKGCYLGQELTVRTYYTGVTRKRIFPFIIPNYEDNPSQVIEPSAPLSIV 263 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,701,543 Number of Sequences: 5004 Number of extensions: 54281 Number of successful extensions: 215 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 200 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 215 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 331187010 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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