Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0546
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce...    27   3.5  
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2...    26   6.1  
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos...    25   8.1  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    25   8.1  
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr...    25   8.1  
SPAC21E11.07 ||SPAC2C4.01|glycine cleavage T-protein|Schizosacch...    25   8.1  

>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 674

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -1

Query: 249 SVATSSADGSTIFSLVSTSRRQLVLKPSS*LFRSVATLGRSFRE 118
           SV   + DG  +  +  +++RQ V+ P +  F +   +GR F+E
Sbjct: 86  SVVAFTKDGERLVGV--SAKRQAVINPENTFFATKRLIGRRFKE 127


>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 426

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 256 GLLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQ 152
           G ++G  +S    +LFIGVD     G+  F   LQ
Sbjct: 385 GEIAGTAYSSSGDSLFIGVDDPMLGGILEFRRPLQ 419


>SPBC409.12c |||nuclear telomere cap complex subunit
           Stn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 444 ILFFRRRVLHLSLVEVFNSVQEVL 373
           I++ + + LHL LV +FN   E++
Sbjct: 195 IIYLKAKELHLPLVHIFNVENEIV 218


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 27  PTESLSARIFYPLPHQKYIDSQWPAP*VTLP 119
           P   +SA  F P+P+  Y D+ + A  V  P
Sbjct: 144 PNMYVSANTFIPMPYAHYTDNMYHAKPVNRP 174


>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
           aminotransferase Eca39|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 256 QKSLFDGIEKFDSSQLKHTETQEKNPLPD 342
           Q +   G +  DSS +K T  +E  PLP+
Sbjct: 3   QTAALHGPKPMDSSHIKVTNVKELKPLPE 31


>SPAC21E11.07 ||SPAC2C4.01|glycine cleavage
           T-protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +2

Query: 566 HKGRH*AREISLNHYFITVTRKCI-SLVSPYFNIAVSQ-IDLRRPLQVL 706
           HKG +  +E+++  Y+  VTRK I   + P +    SQ I+   PL ++
Sbjct: 215 HKGCYLGQELTVRTYYTGVTRKRIFPFIIPNYEDNPSQVIEPSAPLSIV 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,701,543
Number of Sequences: 5004
Number of extensions: 54281
Number of successful extensions: 215
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)