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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0546
         (711 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026213-7|AAB71308.2|  151|Caenorhabditis elegans Tetra thymosi...    50   1e-06
AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.      29   4.3  
AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor o...    29   4.3  
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e...    28   5.7  
AC024819-3|AAF59587.2|  923|Caenorhabditis elegans Hypothetical ...    28   5.7  

>AF026213-7|AAB71308.2|  151|Caenorhabditis elegans Tetra thymosin
           (four thymosin repeatprotein) protein 1 protein.
          Length = 151

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 23/48 (47%), Positives = 30/48 (62%)
 Frame = +1

Query: 298 QLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEK 441
           +LK  ET EKN LP K+ VA EK H   +  +EHFD T++  T  +EK
Sbjct: 23  ELKKVETTEKNVLPTKEDVAEEKQHVERIHEIEHFDSTKLHSTPVKEK 70



 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 25/58 (43%), Positives = 32/58 (55%)
 Frame = +1

Query: 277 IEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKNPL 450
           IE FDS++L  T  +EK  LP  D +  EK H  L D + +F    +K T T EKN L
Sbjct: 54  IEHFDSTKLHSTPVKEKIVLPSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNVL 111



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 25/56 (44%), Positives = 27/56 (48%)
 Frame = +1

Query: 265 LFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTT 432
           L D I  F S  LK TET EKN LP    VA EK     L     FDK+ + H  T
Sbjct: 88  LTDKINNFPSENLKKTETIEKNVLPSPTDVAREKT----LQMAASFDKSALHHVET 139



 Score = 36.3 bits (80), Expect = 0.022
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
 Frame = +2

Query: 116 PSLKDLP--KVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTRSLYSTVSRSL 289
           PS  D+   K   +L  ++  F +  L+  +T EK VLPS  DVA EKT  + ++  +S 
Sbjct: 74  PSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNVLPSPTDVAREKTLQMAASFDKSA 133

Query: 290 I 292
           +
Sbjct: 134 L 134



 Score = 33.5 bits (73), Expect = 0.15
 Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
 Frame = +2

Query: 119 SLKDLPKVATDLKSQL-EGFNTSCLRDVDTNEKIVLPSAEDVATEK 253
           ++ +LPK+  +L   + EG     L+ V+T EK VLP+ EDVA EK
Sbjct: 3   AVTELPKMNQELAGAVREGLE---LKKVETTEKNVLPTKEDVAEEK 45



 Score = 33.1 bits (72), Expect = 0.20
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +2

Query: 161 QLEGFNTSCLRDVDTNEKIVLPSAEDVATEK 253
           ++E F+++ L      EKIVLPSA+D+  EK
Sbjct: 53  EIEHFDSTKLHSTPVKEKIVLPSADDIKQEK 83



 Score = 32.7 bits (71), Expect = 0.27
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = +3

Query: 408 DSDEAHDDGRKESTAPDRSYRSGEGKE--QIPERHRNFDPTKLKHTETCEKNPLPTKDVI 581
           DS + H    KE      +    + K+  ++ ++  NF    LK TET EKN LP+   +
Sbjct: 58  DSTKLHSTPVKEKIVLPSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNVLPSPTDV 117

Query: 582 EQEKS 596
            +EK+
Sbjct: 118 AREKT 122



 Score = 31.5 bits (68), Expect = 0.61
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +3

Query: 477 EGKEQIPERHR--NFDPTKLKHTETCEKNPLPTKDVIEQEK 593
           E K+ +   H   +FD TKL  T   EK  LP+ D I+QEK
Sbjct: 43  EEKQHVERIHEIEHFDSTKLHSTPVKEKIVLPSADDIKQEK 83



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +3

Query: 525 KLKHTETCEKNPLPTKDVIEQEK 593
           +LK  ET EKN LPTK+ + +EK
Sbjct: 23  ELKKVETTEKNVLPTKEDVAEEK 45


>AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.
          Length = 1475

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +3

Query: 417  EAHDDGRKESTAPDRSYRSGEGKEQIPERHRNFDPTKLKHTETCEKNPLPTKDVIEQEK 593
            E  D+  K+   P+R     +GKE     +     T L  T + +   +P KD +E+EK
Sbjct: 1155 EKKDEKEKDRREPERKKGKSDGKE-----YSKASTTSLIPTLSLKNFRIPKKDTVEEEK 1208


>AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor of
            pal-1 protein 3,isoform a protein.
          Length = 1475

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +3

Query: 417  EAHDDGRKESTAPDRSYRSGEGKEQIPERHRNFDPTKLKHTETCEKNPLPTKDVIEQEK 593
            E  D+  K+   P+R     +GKE     +     T L  T + +   +P KD +E+EK
Sbjct: 1155 EKKDEKEKDRREPERKKGKSDGKE-----YSKASTTSLIPTLSLKNFRIPKKDTVEEEK 1208


>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
            mutant phenotypeprotein 1 protein.
          Length = 4177

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +3

Query: 303  EAHRDSGEEPASGQRCCRSGESPPEPLGRS*TLRQDSDEAHDDGRKE 443
            E   +  E+    +   R  E  PEPL R      D DE  DDG ++
Sbjct: 2493 EDEEEEAEDDDQDEDDVRHVEQNPEPLARRLFEEDDDDEEDDDGDED 2539


>AC024819-3|AAF59587.2|  923|Caenorhabditis elegans Hypothetical
           protein Y55B1AL.3a protein.
          Length = 923

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = +3

Query: 54  FYPLPHQKYIDSQWPAP*VTLPP*KTSPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLL 233
           F P+P    + +   +     P   TSP+SP +   S++   P VSVTS P ++      
Sbjct: 19  FSPIPKFSRLRTPRTSREYVCPLKSTSPQSPSS---STENEPPPVSVTSPPARKRALEES 75

Query: 234 KTSPLRR 254
             +P+++
Sbjct: 76  TVTPIQQ 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,182,745
Number of Sequences: 27780
Number of extensions: 318802
Number of successful extensions: 1229
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1227
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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