BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0546 (711 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF026213-7|AAB71308.2| 151|Caenorhabditis elegans Tetra thymosi... 50 1e-06 AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein. 29 4.3 AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor o... 29 4.3 AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e... 28 5.7 AC024819-3|AAF59587.2| 923|Caenorhabditis elegans Hypothetical ... 28 5.7 >AF026213-7|AAB71308.2| 151|Caenorhabditis elegans Tetra thymosin (four thymosin repeatprotein) protein 1 protein. Length = 151 Score = 50.4 bits (115), Expect = 1e-06 Identities = 23/48 (47%), Positives = 30/48 (62%) Frame = +1 Query: 298 QLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEK 441 +LK ET EKN LP K+ VA EK H + +EHFD T++ T +EK Sbjct: 23 ELKKVETTEKNVLPTKEDVAEEKQHVERIHEIEHFDSTKLHSTPVKEK 70 Score = 49.2 bits (112), Expect = 3e-06 Identities = 25/58 (43%), Positives = 32/58 (55%) Frame = +1 Query: 277 IEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKNPL 450 IE FDS++L T +EK LP D + EK H L D + +F +K T T EKN L Sbjct: 54 IEHFDSTKLHSTPVKEKIVLPSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNVL 111 Score = 39.5 bits (88), Expect = 0.002 Identities = 25/56 (44%), Positives = 27/56 (48%) Frame = +1 Query: 265 LFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTT 432 L D I F S LK TET EKN LP VA EK L FDK+ + H T Sbjct: 88 LTDKINNFPSENLKKTETIEKNVLPSPTDVAREKT----LQMAASFDKSALHHVET 139 Score = 36.3 bits (80), Expect = 0.022 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%) Frame = +2 Query: 116 PSLKDLP--KVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTRSLYSTVSRSL 289 PS D+ K +L ++ F + L+ +T EK VLPS DVA EKT + ++ +S Sbjct: 74 PSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNVLPSPTDVAREKTLQMAASFDKSA 133 Query: 290 I 292 + Sbjct: 134 L 134 Score = 33.5 bits (73), Expect = 0.15 Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Frame = +2 Query: 119 SLKDLPKVATDLKSQL-EGFNTSCLRDVDTNEKIVLPSAEDVATEK 253 ++ +LPK+ +L + EG L+ V+T EK VLP+ EDVA EK Sbjct: 3 AVTELPKMNQELAGAVREGLE---LKKVETTEKNVLPTKEDVAEEK 45 Score = 33.1 bits (72), Expect = 0.20 Identities = 14/31 (45%), Positives = 21/31 (67%) Frame = +2 Query: 161 QLEGFNTSCLRDVDTNEKIVLPSAEDVATEK 253 ++E F+++ L EKIVLPSA+D+ EK Sbjct: 53 EIEHFDSTKLHSTPVKEKIVLPSADDIKQEK 83 Score = 32.7 bits (71), Expect = 0.27 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%) Frame = +3 Query: 408 DSDEAHDDGRKESTAPDRSYRSGEGKE--QIPERHRNFDPTKLKHTETCEKNPLPTKDVI 581 DS + H KE + + K+ ++ ++ NF LK TET EKN LP+ + Sbjct: 58 DSTKLHSTPVKEKIVLPSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNVLPSPTDV 117 Query: 582 EQEKS 596 +EK+ Sbjct: 118 AREKT 122 Score = 31.5 bits (68), Expect = 0.61 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%) Frame = +3 Query: 477 EGKEQIPERHR--NFDPTKLKHTETCEKNPLPTKDVIEQEK 593 E K+ + H +FD TKL T EK LP+ D I+QEK Sbjct: 43 EEKQHVERIHEIEHFDSTKLHSTPVKEKIVLPSADDIKQEK 83 Score = 30.7 bits (66), Expect = 1.1 Identities = 13/23 (56%), Positives = 17/23 (73%) Frame = +3 Query: 525 KLKHTETCEKNPLPTKDVIEQEK 593 +LK ET EKN LPTK+ + +EK Sbjct: 23 ELKKVETTEKNVLPTKEDVAEEK 45 >AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein. Length = 1475 Score = 28.7 bits (61), Expect = 4.3 Identities = 17/59 (28%), Positives = 27/59 (45%) Frame = +3 Query: 417 EAHDDGRKESTAPDRSYRSGEGKEQIPERHRNFDPTKLKHTETCEKNPLPTKDVIEQEK 593 E D+ K+ P+R +GKE + T L T + + +P KD +E+EK Sbjct: 1155 EKKDEKEKDRREPERKKGKSDGKE-----YSKASTTSLIPTLSLKNFRIPKKDTVEEEK 1208 >AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor of pal-1 protein 3,isoform a protein. Length = 1475 Score = 28.7 bits (61), Expect = 4.3 Identities = 17/59 (28%), Positives = 27/59 (45%) Frame = +3 Query: 417 EAHDDGRKESTAPDRSYRSGEGKEQIPERHRNFDPTKLKHTETCEKNPLPTKDVIEQEK 593 E D+ K+ P+R +GKE + T L T + + +P KD +E+EK Sbjct: 1155 EKKDEKEKDRREPERKKGKSDGKE-----YSKASTTSLIPTLSLKNFRIPKKDTVEEEK 1208 >AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1 mutant phenotypeprotein 1 protein. Length = 4177 Score = 28.3 bits (60), Expect = 5.7 Identities = 15/47 (31%), Positives = 20/47 (42%) Frame = +3 Query: 303 EAHRDSGEEPASGQRCCRSGESPPEPLGRS*TLRQDSDEAHDDGRKE 443 E + E+ + R E PEPL R D DE DDG ++ Sbjct: 2493 EDEEEEAEDDDQDEDDVRHVEQNPEPLARRLFEEDDDDEEDDDGDED 2539 >AC024819-3|AAF59587.2| 923|Caenorhabditis elegans Hypothetical protein Y55B1AL.3a protein. Length = 923 Score = 28.3 bits (60), Expect = 5.7 Identities = 18/67 (26%), Positives = 32/67 (47%) Frame = +3 Query: 54 FYPLPHQKYIDSQWPAP*VTLPP*KTSPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLL 233 F P+P + + + P TSP+SP + S++ P VSVTS P ++ Sbjct: 19 FSPIPKFSRLRTPRTSREYVCPLKSTSPQSPSS---STENEPPPVSVTSPPARKRALEES 75 Query: 234 KTSPLRR 254 +P+++ Sbjct: 76 TVTPIQQ 82 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,182,745 Number of Sequences: 27780 Number of extensions: 318802 Number of successful extensions: 1229 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 1130 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1227 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1655655746 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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