Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0546
(711 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF026213-7|AAB71308.2| 151|Caenorhabditis elegans Tetra thymosi... 50 1e-06
AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein. 29 4.3
AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor o... 29 4.3
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e... 28 5.7
AC024819-3|AAF59587.2| 923|Caenorhabditis elegans Hypothetical ... 28 5.7
>AF026213-7|AAB71308.2| 151|Caenorhabditis elegans Tetra thymosin
(four thymosin repeatprotein) protein 1 protein.
Length = 151
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/48 (47%), Positives = 30/48 (62%)
Frame = +1
Query: 298 QLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEK 441
+LK ET EKN LP K+ VA EK H + +EHFD T++ T +EK
Sbjct: 23 ELKKVETTEKNVLPTKEDVAEEKQHVERIHEIEHFDSTKLHSTPVKEK 70
Score = 49.2 bits (112), Expect = 3e-06
Identities = 25/58 (43%), Positives = 32/58 (55%)
Frame = +1
Query: 277 IEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKNPL 450
IE FDS++L T +EK LP D + EK H L D + +F +K T T EKN L
Sbjct: 54 IEHFDSTKLHSTPVKEKIVLPSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNVL 111
Score = 39.5 bits (88), Expect = 0.002
Identities = 25/56 (44%), Positives = 27/56 (48%)
Frame = +1
Query: 265 LFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTT 432
L D I F S LK TET EKN LP VA EK L FDK+ + H T
Sbjct: 88 LTDKINNFPSENLKKTETIEKNVLPSPTDVAREKT----LQMAASFDKSALHHVET 139
Score = 36.3 bits (80), Expect = 0.022
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = +2
Query: 116 PSLKDLP--KVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTRSLYSTVSRSL 289
PS D+ K +L ++ F + L+ +T EK VLPS DVA EKT + ++ +S
Sbjct: 74 PSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNVLPSPTDVAREKTLQMAASFDKSA 133
Query: 290 I 292
+
Sbjct: 134 L 134
Score = 33.5 bits (73), Expect = 0.15
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Frame = +2
Query: 119 SLKDLPKVATDLKSQL-EGFNTSCLRDVDTNEKIVLPSAEDVATEK 253
++ +LPK+ +L + EG L+ V+T EK VLP+ EDVA EK
Sbjct: 3 AVTELPKMNQELAGAVREGLE---LKKVETTEKNVLPTKEDVAEEK 45
Score = 33.1 bits (72), Expect = 0.20
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +2
Query: 161 QLEGFNTSCLRDVDTNEKIVLPSAEDVATEK 253
++E F+++ L EKIVLPSA+D+ EK
Sbjct: 53 EIEHFDSTKLHSTPVKEKIVLPSADDIKQEK 83
Score = 32.7 bits (71), Expect = 0.27
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = +3
Query: 408 DSDEAHDDGRKESTAPDRSYRSGEGKE--QIPERHRNFDPTKLKHTETCEKNPLPTKDVI 581
DS + H KE + + K+ ++ ++ NF LK TET EKN LP+ +
Sbjct: 58 DSTKLHSTPVKEKIVLPSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNVLPSPTDV 117
Query: 582 EQEKS 596
+EK+
Sbjct: 118 AREKT 122
Score = 31.5 bits (68), Expect = 0.61
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +3
Query: 477 EGKEQIPERHR--NFDPTKLKHTETCEKNPLPTKDVIEQEK 593
E K+ + H +FD TKL T EK LP+ D I+QEK
Sbjct: 43 EEKQHVERIHEIEHFDSTKLHSTPVKEKIVLPSADDIKQEK 83
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +3
Query: 525 KLKHTETCEKNPLPTKDVIEQEK 593
+LK ET EKN LPTK+ + +EK
Sbjct: 23 ELKKVETTEKNVLPTKEDVAEEK 45
>AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.
Length = 1475
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +3
Query: 417 EAHDDGRKESTAPDRSYRSGEGKEQIPERHRNFDPTKLKHTETCEKNPLPTKDVIEQEK 593
E D+ K+ P+R +GKE + T L T + + +P KD +E+EK
Sbjct: 1155 EKKDEKEKDRREPERKKGKSDGKE-----YSKASTTSLIPTLSLKNFRIPKKDTVEEEK 1208
>AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor of
pal-1 protein 3,isoform a protein.
Length = 1475
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +3
Query: 417 EAHDDGRKESTAPDRSYRSGEGKEQIPERHRNFDPTKLKHTETCEKNPLPTKDVIEQEK 593
E D+ K+ P+R +GKE + T L T + + +P KD +E+EK
Sbjct: 1155 EKKDEKEKDRREPERKKGKSDGKE-----YSKASTTSLIPTLSLKNFRIPKKDTVEEEK 1208
>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
mutant phenotypeprotein 1 protein.
Length = 4177
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +3
Query: 303 EAHRDSGEEPASGQRCCRSGESPPEPLGRS*TLRQDSDEAHDDGRKE 443
E + E+ + R E PEPL R D DE DDG ++
Sbjct: 2493 EDEEEEAEDDDQDEDDVRHVEQNPEPLARRLFEEDDDDEEDDDGDED 2539
>AC024819-3|AAF59587.2| 923|Caenorhabditis elegans Hypothetical
protein Y55B1AL.3a protein.
Length = 923
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = +3
Query: 54 FYPLPHQKYIDSQWPAP*VTLPP*KTSPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLL 233
F P+P + + + P TSP+SP + S++ P VSVTS P ++
Sbjct: 19 FSPIPKFSRLRTPRTSREYVCPLKSTSPQSPSS---STENEPPPVSVTSPPARKRALEES 75
Query: 234 KTSPLRR 254
+P+++
Sbjct: 76 TVTPIQQ 82
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,182,745
Number of Sequences: 27780
Number of extensions: 318802
Number of successful extensions: 1229
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1227
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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