Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0546
(711 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g22795.1 68415.m02704 expressed protein 33 0.25
At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative si... 30 1.3
At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containi... 30 1.7
At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase f... 29 4.0
At4g22290.1 68417.m03224 ubiquitin carboxyl-terminal hydrolase f... 29 4.0
At2g33793.1 68415.m04145 expressed protein 29 4.0
At4g26630.1 68417.m03837 expressed protein 28 5.3
At4g30710.2 68417.m04353 expressed protein contains Pfam domain,... 28 7.0
At4g30710.1 68417.m04352 expressed protein contains Pfam domain,... 28 7.0
At1g70620.1 68414.m08138 cyclin-related contains weak similarity... 28 7.0
At4g05280.1 68417.m00799 Ulp1 protease family protein contains P... 27 9.3
At3g56250.1 68416.m06251 expressed protein 27 9.3
At1g49980.1 68414.m05609 UMUC-like DNA repair family protein low... 27 9.3
At1g19000.2 68414.m02364 myb family transcription factor similar... 27 9.3
At1g19000.1 68414.m02363 myb family transcription factor similar... 27 9.3
>At2g22795.1 68415.m02704 expressed protein
Length = 734
Score = 32.7 bits (71), Expect = 0.25
Identities = 20/77 (25%), Positives = 36/77 (46%)
Frame = +3
Query: 324 EEPASGQRCCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQIPER 503
+E AS Q + E+ + S + + ++ ++ KE +AP + E ++ E
Sbjct: 549 KEEASSQEESKENETETKEKEESSSQEETKEKENEKIEKEESAPQEETKEKENEKIEKEE 608
Query: 504 HRNFDPTKLKHTETCEK 554
+ + TK K TET EK
Sbjct: 609 SASQEETKEKETETKEK 625
>At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative
similar to sucrose-phosphate synthase isoform 1, Citrus
unshiu, PIR:S72648
Length = 894
Score = 30.3 bits (65), Expect = 1.3
Identities = 25/83 (30%), Positives = 39/83 (46%)
Frame = +2
Query: 32 RVAECTNLLSPSSSKIY*FTMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNE 211
R+A C P ++ F + S S + SL+D+ ++ +LK L+G + VDTN
Sbjct: 513 RIASCKQR-HPKWQRVE-FENSDSDSPSDSLRDINDISLNLKLSLDGEKSGSNNGVDTN- 569
Query: 212 KIVLPSAEDVATEKTRSLYSTVS 280
AED A E+ + VS
Sbjct: 570 ----LDAEDRAAERKAEVEKAVS 588
>At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containing
protein contains Pfam profile PF01388: ARID/BRIGHT DNA
binding domain
Length = 786
Score = 29.9 bits (64), Expect = 1.7
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = +2
Query: 89 TMACSVSDTPSLKDLPKVATDLKSQLEGF---NTSCLRDVDTNEKIVLPSAEDVATEKTR 259
T S+ + + DLPK+ + SQ E + S +DT E ++ P+AED E
Sbjct: 74 TSLASLEEVTNADDLPKIDDEKNSQFETSPHPSPSPSVALDTEEGLINPTAEDTVEENIV 133
Query: 260 SLYSTVSRSLI 292
S S VS ++
Sbjct: 134 S--SEVSSDIL 142
>At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase
family protein / UPP synthetase family protein contains
putative undecaprenyl diphosphate synthase domain
[PF01255]; similar to S. cerevisiae dehydrodolichyl
diphosphate synthetase (DEDOL-PP
synthase)(Rer2)[SP|P35196], a cis-prenyltransferase
Length = 271
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = -3
Query: 259 SGLLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQVCGDLG 134
S ++ G+ +KHNL IG+D AG + + LQ C ++G
Sbjct: 39 SFIMDGNRRFAKKHNL-IGLDAGHRAGFISVKYILQYCKEIG 79
>At4g22290.1 68417.m03224 ubiquitin carboxyl-terminal hydrolase
family protein similar to pVHL-interacting
deubiquitinating enzyme 1 type II [Homo sapiens]
GI:18698435; contains Pfam profile PF00443: Ubiquitin
carboxyl-terminal hydrolase
Length = 974
Score = 28.7 bits (61), Expect = 4.0
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 1/90 (1%)
Frame = +3
Query: 216 LCFRLLKTSPLRRPEVFIRRYREV*FEPAEAHRDSGEE-PASGQRCCRSGESPPEPLGRS 392
L FRL+ + IR+ + E + S EE +R +SPP PLG +
Sbjct: 409 LLFRLITPERVFEASCSIRKILRMKGEREVKNGVSEEEREVKRKRVMERSDSPPPPLGFN 468
Query: 393 *TLRQDSDEAHDDGRKESTAPDRSYRSGEG 482
L ++ DD +E +S G G
Sbjct: 469 NPLLPLANTYDDDDEEEENEQKKSQARGNG 498
>At2g33793.1 68415.m04145 expressed protein
Length = 212
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Frame = +3
Query: 399 LRQDSDEAHDDGRKE------STAPDRSYRSGEGKEQIPERHRNFDPTKLKHTETCE 551
L+Q ++AH+DGRK+ S + + + E K ++ + +NF K ++ CE
Sbjct: 47 LQQFREKAHEDGRKKKEESISSVSTEVKSKIDELKSKLEKERQNFSKALSKSSKECE 103
>At4g26630.1 68417.m03837 expressed protein
Length = 763
Score = 28.3 bits (60), Expect = 5.3
Identities = 19/73 (26%), Positives = 32/73 (43%)
Frame = +3
Query: 294 EPAEAHRDSGEEPASGQRCCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRS 473
E AE + EE +S + P+P + ++ DE+ + +E+T R R
Sbjct: 536 EKAEEKEEKKEEENENGIPDKSEDEAPQP-----SESEEKDESEEHSEEETTKKKRGSRL 590
Query: 474 GEGKEQIPERHRN 512
GK++ R RN
Sbjct: 591 SAGKKESAGRARN 603
>At4g30710.2 68417.m04353 expressed protein contains Pfam domain,
PF04484: Family of unknown function (DUF566)
Length = 644
Score = 27.9 bits (59), Expect = 7.0
Identities = 49/198 (24%), Positives = 78/198 (39%), Gaps = 11/198 (5%)
Frame = +3
Query: 12 VFSRSP-TESLSARIFYPLPHQKYIDSQWPAP*VTLPP*KTSPRSPQT*RVSS----KAS 176
V +R P T +S+R P P + + + P+P VT P +S +S R S + S
Sbjct: 22 VATRRPRTMEVSSRYRSPTPTK---NGRCPSPSVTRPTVSSSSQSVAAKRAVSAERKRPS 78
Query: 177 TPAVSVT-STPMKRLCFRL----LKTSPLRRPE-VFIRRYREV*FEPAEAHRDSGEEPAS 338
TP + STP++ L L + S R PE ++ R + DS P S
Sbjct: 79 TPPSPTSPSTPIRDLSIDLPASSRRLSTGRLPESLWPSTMRSL---SVSFQSDSVSVPVS 135
Query: 339 GQRCCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQIPERHRNFD 518
+ S S L S + Q +A P+R +GK + + N
Sbjct: 136 KKERPVSSSSGDRTLRPSSNIAQ-KHKAETTSVSRKPTPERKRSPLKGKNNVSDLSENSK 194
Query: 519 PTKLKHTETCEKNPLPTK 572
P H+ E++ P++
Sbjct: 195 PVDGPHSRLIEQHRWPSR 212
>At4g30710.1 68417.m04352 expressed protein contains Pfam domain,
PF04484: Family of unknown function (DUF566)
Length = 644
Score = 27.9 bits (59), Expect = 7.0
Identities = 49/198 (24%), Positives = 78/198 (39%), Gaps = 11/198 (5%)
Frame = +3
Query: 12 VFSRSP-TESLSARIFYPLPHQKYIDSQWPAP*VTLPP*KTSPRSPQT*RVSS----KAS 176
V +R P T +S+R P P + + + P+P VT P +S +S R S + S
Sbjct: 22 VATRRPRTMEVSSRYRSPTPTK---NGRCPSPSVTRPTVSSSSQSVAAKRAVSAERKRPS 78
Query: 177 TPAVSVT-STPMKRLCFRL----LKTSPLRRPE-VFIRRYREV*FEPAEAHRDSGEEPAS 338
TP + STP++ L L + S R PE ++ R + DS P S
Sbjct: 79 TPPSPTSPSTPIRDLSIDLPASSRRLSTGRLPESLWPSTMRSL---SVSFQSDSVSVPVS 135
Query: 339 GQRCCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQIPERHRNFD 518
+ S S L S + Q +A P+R +GK + + N
Sbjct: 136 KKERPVSSSSGDRTLRPSSNIAQ-KHKAETTSVSRKPTPERKRSPLKGKNNVSDLSENSK 194
Query: 519 PTKLKHTETCEKNPLPTK 572
P H+ E++ P++
Sbjct: 195 PVDGPHSRLIEQHRWPSR 212
>At1g70620.1 68414.m08138 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide I)
[Bos taurus]
Length = 897
Score = 27.9 bits (59), Expect = 7.0
Identities = 21/83 (25%), Positives = 36/83 (43%)
Frame = +3
Query: 315 DSGEEPASGQRCCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQI 494
+S ++ R R SP R SDE+ DD +++S++ ++ GK +
Sbjct: 794 ESSDDSKRKSRSRRRSVSPSPVRSRRKRSSPSSDESSDDSKRKSSSKRKNRSPSPGKSR- 852
Query: 495 PERHRNFDPTKLKHTETCEKNPL 563
RH + KH++ KN L
Sbjct: 853 -RRHVSSRSPHSKHSQ--HKNTL 872
>At4g05280.1 68417.m00799 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
At1g25886, At4g03300
Length = 1312
Score = 27.5 bits (58), Expect = 9.3
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +3
Query: 429 DGRKESTAPDRSYRSGEGKEQIPERHRNFDPTKLKHTETCEKNPLPTKDVIEQEKS 596
D +++ AP S + K+QI E D K ++ E C P+P + ++E +S
Sbjct: 364 DVKRKRNAPGPSPKEPAMKKQISE----MDCDKEENAEDCFGEPVPERFIVEMRRS 415
>At3g56250.1 68416.m06251 expressed protein
Length = 222
Score = 27.5 bits (58), Expect = 9.3
Identities = 21/61 (34%), Positives = 32/61 (52%)
Frame = +2
Query: 2 RALSIQSQSDRVAECTNLLSPSSSKIY*FTMACSVSDTPSLKDLPKVATDLKSQLEGFNT 181
R++ + Q +A+CTN +S SS + + S T SLK L + T LK + + NT
Sbjct: 5 RSVGGRIQRKPLADCTNTVSRSSQQSSSSVKFANPSLTSSLKRLVE-QTTLKEKPKDVNT 63
Query: 182 S 184
S
Sbjct: 64 S 64
>At1g49980.1 68414.m05609 UMUC-like DNA repair family protein low
similarity to DNA polymerase kappa [Mus musculus]
GI:14279087; contains Pfam profile PF00817:
ImpB/MucB/SamB family
Length = 785
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = -3
Query: 256 GLLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQVCGDLGE 131
GL G++ + +++ +T +AGV A L +VC D+ +
Sbjct: 214 GLSGGEIAEELRSSVYSETGLTCSAGVAANRLLAKVCSDINK 255
>At1g19000.2 68414.m02364 myb family transcription factor similar to
MybSt1 GI:7705206 from [Solanum tuberosum]
Length = 285
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +1
Query: 256 QKSLFD-GIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLD 387
+ SLFD E ++ TQE +PLP+ ++ + ++A Q D
Sbjct: 160 RSSLFDITTETVTEMAMEQDPTQENSPLPETNISSGQQAMQVFTD 204
>At1g19000.1 68414.m02363 myb family transcription factor similar to
MybSt1 GI:7705206 from [Solanum tuberosum]
Length = 285
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +1
Query: 256 QKSLFD-GIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLD 387
+ SLFD E ++ TQE +PLP+ ++ + ++A Q D
Sbjct: 160 RSSLFDITTETVTEMAMEQDPTQENSPLPETNISSGQQAMQVFTD 204
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,416,310
Number of Sequences: 28952
Number of extensions: 303881
Number of successful extensions: 1077
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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