BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0546 (711 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g22795.1 68415.m02704 expressed protein 33 0.25 At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative si... 30 1.3 At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containi... 30 1.7 At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase f... 29 4.0 At4g22290.1 68417.m03224 ubiquitin carboxyl-terminal hydrolase f... 29 4.0 At2g33793.1 68415.m04145 expressed protein 29 4.0 At4g26630.1 68417.m03837 expressed protein 28 5.3 At4g30710.2 68417.m04353 expressed protein contains Pfam domain,... 28 7.0 At4g30710.1 68417.m04352 expressed protein contains Pfam domain,... 28 7.0 At1g70620.1 68414.m08138 cyclin-related contains weak similarity... 28 7.0 At4g05280.1 68417.m00799 Ulp1 protease family protein contains P... 27 9.3 At3g56250.1 68416.m06251 expressed protein 27 9.3 At1g49980.1 68414.m05609 UMUC-like DNA repair family protein low... 27 9.3 At1g19000.2 68414.m02364 myb family transcription factor similar... 27 9.3 At1g19000.1 68414.m02363 myb family transcription factor similar... 27 9.3 >At2g22795.1 68415.m02704 expressed protein Length = 734 Score = 32.7 bits (71), Expect = 0.25 Identities = 20/77 (25%), Positives = 36/77 (46%) Frame = +3 Query: 324 EEPASGQRCCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQIPER 503 +E AS Q + E+ + S + + ++ ++ KE +AP + E ++ E Sbjct: 549 KEEASSQEESKENETETKEKEESSSQEETKEKENEKIEKEESAPQEETKEKENEKIEKEE 608 Query: 504 HRNFDPTKLKHTETCEK 554 + + TK K TET EK Sbjct: 609 SASQEETKEKETETKEK 625 >At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative similar to sucrose-phosphate synthase isoform 1, Citrus unshiu, PIR:S72648 Length = 894 Score = 30.3 bits (65), Expect = 1.3 Identities = 25/83 (30%), Positives = 39/83 (46%) Frame = +2 Query: 32 RVAECTNLLSPSSSKIY*FTMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNE 211 R+A C P ++ F + S S + SL+D+ ++ +LK L+G + VDTN Sbjct: 513 RIASCKQR-HPKWQRVE-FENSDSDSPSDSLRDINDISLNLKLSLDGEKSGSNNGVDTN- 569 Query: 212 KIVLPSAEDVATEKTRSLYSTVS 280 AED A E+ + VS Sbjct: 570 ----LDAEDRAAERKAEVEKAVS 588 >At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containing protein contains Pfam profile PF01388: ARID/BRIGHT DNA binding domain Length = 786 Score = 29.9 bits (64), Expect = 1.7 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 3/71 (4%) Frame = +2 Query: 89 TMACSVSDTPSLKDLPKVATDLKSQLEGF---NTSCLRDVDTNEKIVLPSAEDVATEKTR 259 T S+ + + DLPK+ + SQ E + S +DT E ++ P+AED E Sbjct: 74 TSLASLEEVTNADDLPKIDDEKNSQFETSPHPSPSPSVALDTEEGLINPTAEDTVEENIV 133 Query: 260 SLYSTVSRSLI 292 S S VS ++ Sbjct: 134 S--SEVSSDIL 142 >At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein contains putative undecaprenyl diphosphate synthase domain [PF01255]; similar to S. cerevisiae dehydrodolichyl diphosphate synthetase (DEDOL-PP synthase)(Rer2)[SP|P35196], a cis-prenyltransferase Length = 271 Score = 28.7 bits (61), Expect = 4.0 Identities = 15/42 (35%), Positives = 24/42 (57%) Frame = -3 Query: 259 SGLLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQVCGDLG 134 S ++ G+ +KHNL IG+D AG + + LQ C ++G Sbjct: 39 SFIMDGNRRFAKKHNL-IGLDAGHRAGFISVKYILQYCKEIG 79 >At4g22290.1 68417.m03224 ubiquitin carboxyl-terminal hydrolase family protein similar to pVHL-interacting deubiquitinating enzyme 1 type II [Homo sapiens] GI:18698435; contains Pfam profile PF00443: Ubiquitin carboxyl-terminal hydrolase Length = 974 Score = 28.7 bits (61), Expect = 4.0 Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 1/90 (1%) Frame = +3 Query: 216 LCFRLLKTSPLRRPEVFIRRYREV*FEPAEAHRDSGEE-PASGQRCCRSGESPPEPLGRS 392 L FRL+ + IR+ + E + S EE +R +SPP PLG + Sbjct: 409 LLFRLITPERVFEASCSIRKILRMKGEREVKNGVSEEEREVKRKRVMERSDSPPPPLGFN 468 Query: 393 *TLRQDSDEAHDDGRKESTAPDRSYRSGEG 482 L ++ DD +E +S G G Sbjct: 469 NPLLPLANTYDDDDEEEENEQKKSQARGNG 498 >At2g33793.1 68415.m04145 expressed protein Length = 212 Score = 28.7 bits (61), Expect = 4.0 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 6/57 (10%) Frame = +3 Query: 399 LRQDSDEAHDDGRKE------STAPDRSYRSGEGKEQIPERHRNFDPTKLKHTETCE 551 L+Q ++AH+DGRK+ S + + + E K ++ + +NF K ++ CE Sbjct: 47 LQQFREKAHEDGRKKKEESISSVSTEVKSKIDELKSKLEKERQNFSKALSKSSKECE 103 >At4g26630.1 68417.m03837 expressed protein Length = 763 Score = 28.3 bits (60), Expect = 5.3 Identities = 19/73 (26%), Positives = 32/73 (43%) Frame = +3 Query: 294 EPAEAHRDSGEEPASGQRCCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRS 473 E AE + EE +S + P+P + ++ DE+ + +E+T R R Sbjct: 536 EKAEEKEEKKEEENENGIPDKSEDEAPQP-----SESEEKDESEEHSEEETTKKKRGSRL 590 Query: 474 GEGKEQIPERHRN 512 GK++ R RN Sbjct: 591 SAGKKESAGRARN 603 >At4g30710.2 68417.m04353 expressed protein contains Pfam domain, PF04484: Family of unknown function (DUF566) Length = 644 Score = 27.9 bits (59), Expect = 7.0 Identities = 49/198 (24%), Positives = 78/198 (39%), Gaps = 11/198 (5%) Frame = +3 Query: 12 VFSRSP-TESLSARIFYPLPHQKYIDSQWPAP*VTLPP*KTSPRSPQT*RVSS----KAS 176 V +R P T +S+R P P + + + P+P VT P +S +S R S + S Sbjct: 22 VATRRPRTMEVSSRYRSPTPTK---NGRCPSPSVTRPTVSSSSQSVAAKRAVSAERKRPS 78 Query: 177 TPAVSVT-STPMKRLCFRL----LKTSPLRRPE-VFIRRYREV*FEPAEAHRDSGEEPAS 338 TP + STP++ L L + S R PE ++ R + DS P S Sbjct: 79 TPPSPTSPSTPIRDLSIDLPASSRRLSTGRLPESLWPSTMRSL---SVSFQSDSVSVPVS 135 Query: 339 GQRCCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQIPERHRNFD 518 + S S L S + Q +A P+R +GK + + N Sbjct: 136 KKERPVSSSSGDRTLRPSSNIAQ-KHKAETTSVSRKPTPERKRSPLKGKNNVSDLSENSK 194 Query: 519 PTKLKHTETCEKNPLPTK 572 P H+ E++ P++ Sbjct: 195 PVDGPHSRLIEQHRWPSR 212 >At4g30710.1 68417.m04352 expressed protein contains Pfam domain, PF04484: Family of unknown function (DUF566) Length = 644 Score = 27.9 bits (59), Expect = 7.0 Identities = 49/198 (24%), Positives = 78/198 (39%), Gaps = 11/198 (5%) Frame = +3 Query: 12 VFSRSP-TESLSARIFYPLPHQKYIDSQWPAP*VTLPP*KTSPRSPQT*RVSS----KAS 176 V +R P T +S+R P P + + + P+P VT P +S +S R S + S Sbjct: 22 VATRRPRTMEVSSRYRSPTPTK---NGRCPSPSVTRPTVSSSSQSVAAKRAVSAERKRPS 78 Query: 177 TPAVSVT-STPMKRLCFRL----LKTSPLRRPE-VFIRRYREV*FEPAEAHRDSGEEPAS 338 TP + STP++ L L + S R PE ++ R + DS P S Sbjct: 79 TPPSPTSPSTPIRDLSIDLPASSRRLSTGRLPESLWPSTMRSL---SVSFQSDSVSVPVS 135 Query: 339 GQRCCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQIPERHRNFD 518 + S S L S + Q +A P+R +GK + + N Sbjct: 136 KKERPVSSSSGDRTLRPSSNIAQ-KHKAETTSVSRKPTPERKRSPLKGKNNVSDLSENSK 194 Query: 519 PTKLKHTETCEKNPLPTK 572 P H+ E++ P++ Sbjct: 195 PVDGPHSRLIEQHRWPSR 212 >At1g70620.1 68414.m08138 cyclin-related contains weak similarity to Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide I) [Bos taurus] Length = 897 Score = 27.9 bits (59), Expect = 7.0 Identities = 21/83 (25%), Positives = 36/83 (43%) Frame = +3 Query: 315 DSGEEPASGQRCCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQI 494 +S ++ R R SP R SDE+ DD +++S++ ++ GK + Sbjct: 794 ESSDDSKRKSRSRRRSVSPSPVRSRRKRSSPSSDESSDDSKRKSSSKRKNRSPSPGKSR- 852 Query: 495 PERHRNFDPTKLKHTETCEKNPL 563 RH + KH++ KN L Sbjct: 853 -RRHVSSRSPHSKHSQ--HKNTL 872 >At4g05280.1 68417.m00799 Ulp1 protease family protein contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain; similar to At3g24380, At5g36840, At5g35010, At3g42740, At4g05290, At2g14770, At3g43390, At2g05560, At4g08880, At1g34730, At1g27790, At1g34740, At1g27780, At5g36850, At3g42730, At1g52020, At3g24390, At1g25886, At4g03300 Length = 1312 Score = 27.5 bits (58), Expect = 9.3 Identities = 16/56 (28%), Positives = 28/56 (50%) Frame = +3 Query: 429 DGRKESTAPDRSYRSGEGKEQIPERHRNFDPTKLKHTETCEKNPLPTKDVIEQEKS 596 D +++ AP S + K+QI E D K ++ E C P+P + ++E +S Sbjct: 364 DVKRKRNAPGPSPKEPAMKKQISE----MDCDKEENAEDCFGEPVPERFIVEMRRS 415 >At3g56250.1 68416.m06251 expressed protein Length = 222 Score = 27.5 bits (58), Expect = 9.3 Identities = 21/61 (34%), Positives = 32/61 (52%) Frame = +2 Query: 2 RALSIQSQSDRVAECTNLLSPSSSKIY*FTMACSVSDTPSLKDLPKVATDLKSQLEGFNT 181 R++ + Q +A+CTN +S SS + + S T SLK L + T LK + + NT Sbjct: 5 RSVGGRIQRKPLADCTNTVSRSSQQSSSSVKFANPSLTSSLKRLVE-QTTLKEKPKDVNT 63 Query: 182 S 184 S Sbjct: 64 S 64 >At1g49980.1 68414.m05609 UMUC-like DNA repair family protein low similarity to DNA polymerase kappa [Mus musculus] GI:14279087; contains Pfam profile PF00817: ImpB/MucB/SamB family Length = 785 Score = 27.5 bits (58), Expect = 9.3 Identities = 12/42 (28%), Positives = 23/42 (54%) Frame = -3 Query: 256 GLLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQVCGDLGE 131 GL G++ + +++ +T +AGV A L +VC D+ + Sbjct: 214 GLSGGEIAEELRSSVYSETGLTCSAGVAANRLLAKVCSDINK 255 >At1g19000.2 68414.m02364 myb family transcription factor similar to MybSt1 GI:7705206 from [Solanum tuberosum] Length = 285 Score = 27.5 bits (58), Expect = 9.3 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Frame = +1 Query: 256 QKSLFD-GIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLD 387 + SLFD E ++ TQE +PLP+ ++ + ++A Q D Sbjct: 160 RSSLFDITTETVTEMAMEQDPTQENSPLPETNISSGQQAMQVFTD 204 >At1g19000.1 68414.m02363 myb family transcription factor similar to MybSt1 GI:7705206 from [Solanum tuberosum] Length = 285 Score = 27.5 bits (58), Expect = 9.3 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Frame = +1 Query: 256 QKSLFD-GIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLD 387 + SLFD E ++ TQE +PLP+ ++ + ++A Q D Sbjct: 160 RSSLFDITTETVTEMAMEQDPTQENSPLPETNISSGQQAMQVFTD 204 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,416,310 Number of Sequences: 28952 Number of extensions: 303881 Number of successful extensions: 1077 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 997 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1062 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1535986264 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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