Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0545
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces po...    29   0.82 
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    28   1.1  
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   1.4  
SPBP22H7.06 |||nicotinamide riboside kinase |Schizosaccharomyces...    27   1.9  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    27   3.3  
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    26   4.4  
SPCP31B10.02 |||conserved eukaryotic protein|Schizosaccharomyces...    25   7.7  
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe...    25   7.7  

>SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +1

Query: 169 PRRLREEDGTMCSSGDWMQPRRPPNCSARSTKPSPQLTTLTPKV 300
           P  L E      S+G   + R PPN S R  +       LTPK+
Sbjct: 2   PEALNENVSDTASNGPVAKTRAPPNTSFRQQRIKSWQPLLTPKI 45


>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +2

Query: 413 PQTTAQIR*LLVGPDRHGRRCP-G*IPHVHMLRREIDVVPSARAGQKSALGNYISP 577
           P+ T ++  L  G D   +R P G I H H LR  ++   +    ++S +GN  SP
Sbjct: 306 PENTDEMEPLPRGLDMTPKRLPCGHILHFHCLRNWLERQQTCPICRRSVIGNQSSP 361


>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 529

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 478 GLNPARSYAPTGDRRGPLGSRRPEVRPGELHLPPGLREGRVRQIP 612
           GLN ARS++   D +G  G  + +     +HL  G    R R+ P
Sbjct: 51  GLNTARSFSSFQDLKGMSGDAKEQESATLVHLTKGRAHPRSRRPP 95


>SPBP22H7.06 |||nicotinamide riboside kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 230

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -1

Query: 256 TSQSSLVGGAAASNRHLSTLCRLPHVVFGDGLKMQH 149
           T ++ +VG + AS    STLC+L H +F +G  + H
Sbjct: 2   TRKTIIVGVSGASCSGKSTLCQLLHAIF-EGSSLVH 36


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 3   LNTIAYYRWLIFFFSFSNF 59
           L+ I Y+ W  FFFSF ++
Sbjct: 256 LSQINYFLWFFFFFSFPSY 274


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -1

Query: 364 EPSHTCTCSGWHRAACAPRTREPLE*EWSAVGK-ASSTSQSSLVGGAAASN 215
           EP   C  +G + + C P   +P     SA     S+TS SSLV     ++
Sbjct: 88  EPGSECIYNGPYYSQCIPVDIDPSSSSSSAASSTTSTTSSSSLVSSTTLTS 138


>SPCP31B10.02 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 143

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +1

Query: 235 PPNCSARSTKPSPQLTTLTPKVRAFV--ERRLL 327
           PP+ +  S K +  L  L P+++AFV  E+RL+
Sbjct: 103 PPDLAKVSLKETSSLEELPPQLKAFVLLEKRLM 135


>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 424 CPNTITVGWPGQTRQTLPGLNP 489
           C ++  + WPG +RQ L  L+P
Sbjct: 294 CFSSTPIPWPGFSRQALKNLSP 315


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,573,415
Number of Sequences: 5004
Number of extensions: 47030
Number of successful extensions: 149
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)