Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0545
(682 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 33 0.28
01_05_0164 + 18827390-18827710 31 0.84
12_01_0328 + 2535049-2535213,2536611-2537777 31 1.1
05_02_0151 - 7115201-7115668,7115851-7116137,7117355-7117784 30 2.0
10_08_0570 + 18851451-18851723,18851894-18851928,18851929-188519... 29 2.6
08_02_0980 + 23255992-23256408,23256480-23256517,23256606-232566... 29 2.6
04_04_0151 + 23134467-23134627,23134657-23134803,23135413-231355... 29 2.6
01_06_1411 + 37127098-37128279 29 2.6
06_02_0113 - 11984121-11984462,11984494-11984559,11984943-119852... 29 3.4
05_06_0149 - 25991761-25993181,25993246-25993324 29 3.4
06_03_0332 + 19652207-19652995 29 4.5
04_03_0853 - 20292734-20292968,20293056-20293144,20293239-202941... 29 4.5
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863... 29 4.5
11_03_0031 - 9094643-9095824,9095945-9096034,9096141-9096216,909... 28 6.0
09_04_0038 - 13996505-13996836,13997047-13997077,13997307-139974... 28 6.0
06_02_0192 + 12872611-12872979 28 6.0
01_01_0219 + 1863478-1864041,1864459-1865109 28 6.0
04_04_1215 - 31803261-31804847,31804927-31805052,31806502-31806879 28 7.9
03_06_0090 + 31570588-31570710,31570962-31571080,31572215-315722... 28 7.9
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 32.7 bits (71), Expect = 0.28
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +3
Query: 528 PRLAPARSPPWGTTSPPRITRRPCPTD 608
P++ P SPP T SPP IT P P D
Sbjct: 616 PKITPYPSPPEVTPSPPEITPYPSPPD 642
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +3
Query: 528 PRLAPARSPPWGTTSPPRITRRPCPTD 608
P + P SPP T SPP IT P P +
Sbjct: 584 PEITPYPSPPEITPSPPEITPYPSPPE 610
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +3
Query: 528 PRLAPARSPPWGTTSPPRITRRPCPTD 608
P +AP SPP SPP IT P P +
Sbjct: 444 PEIAPYPSPPEIVPSPPEITPYPSPPE 470
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 528 PRLAPARSPPWGTTSPPRITRRPCPTD 608
P + P SPP SPP+IT P P +
Sbjct: 600 PEITPYPSPPEVVPSPPKITPYPSPPE 626
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +3
Query: 528 PRLAPARSPPWGTTSPPRITRRPCPTD 608
P + P SPP T PP IT P P +
Sbjct: 568 PEITPYPSPPEVTPGPPEITPYPSPPE 594
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +3
Query: 528 PRLAPARSPPWGTTSPPRITRRPCPTD 608
P + P SPP SPP IT P P +
Sbjct: 460 PEITPYPSPPEIVPSPPEITPYPSPPE 486
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +3
Query: 528 PRLAPARSPPWGTTSPPRITRRPCPTD 608
P + P SPP SPP IT P P +
Sbjct: 508 PEITPYPSPPEIVPSPPEITPYPSPPE 534
>01_05_0164 + 18827390-18827710
Length = 106
Score = 31.1 bits (67), Expect = 0.84
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +3
Query: 462 TADVARVESRTFICSDGRSTWSPRLAP--ARSPPWGTTSP 575
T A V +R F R+TW P LAP +R PP TT P
Sbjct: 29 TVKEAAVGARGFQIRWSRTTWRPDLAPTTSRRPPATTTDP 68
>12_01_0328 + 2535049-2535213,2536611-2537777
Length = 443
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +3
Query: 255 VDEAFPTADHSHSKGSRVRGAQAALCQPEHVHVCDGSETEARA 383
VD F H++ + +RV G C P HV V DG E A
Sbjct: 332 VDAVFAGHVHAYERFARVYGGGEDACGPVHVTVGDGGNREGLA 374
>05_02_0151 - 7115201-7115668,7115851-7116137,7117355-7117784
Length = 394
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +3
Query: 516 STWSPRLAPARSPPWGTTSPPRITRRP 596
+T SPR A +PPW T PP I P
Sbjct: 104 ATSSPRPASPPTPPWTTAPPPGIAAPP 130
>10_08_0570 +
18851451-18851723,18851894-18851928,18851929-18851998,
18852089-18852187,18852276-18852365,18852430-18852920,
18853015-18853102,18853204-18853245,18853548-18853574,
18853817-18853996,18854249-18854416,18854501-18854710
Length = 590
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/46 (39%), Positives = 22/46 (47%)
Frame = +3
Query: 528 PRLAPARSPPWGTTSPPRITRRPCPTDSLVA*EVHNVRDTVLDGPC 665
PR S P SP RI RP PT LVA + + + +L PC
Sbjct: 258 PRPPRRSSSPVPLPSPHRILHRPRPTSELVAGAIF-ITNRILCRPC 302
>08_02_0980 +
23255992-23256408,23256480-23256517,23256606-23256654,
23256787-23256848,23256876-23256938,23256939-23257599
Length = 429
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/32 (53%), Positives = 20/32 (62%)
Frame = +3
Query: 525 SPRLAPARSPPWGTTSPPRITRRPCPTDSLVA 620
SPR + + +PP SP RI RRP PT LVA
Sbjct: 302 SPRRSSSPAPP---PSPRRILRRPRPTLELVA 330
>04_04_0151 +
23134467-23134627,23134657-23134803,23135413-23135512,
23135554-23135638,23135767-23136419
Length = 381
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Frame = +3
Query: 528 PRLAPARSPPWGTTSPP------RITRRPCPTDSLVA*EVHNVRDTVLDGPC 665
PRL+ PP ++SP RI RRP PT LVA V +L PC
Sbjct: 251 PRLSRWLRPPRRSSSPVPPLSLRRILRRPRPTPELVAGAVSVTTRRILRRPC 302
>01_06_1411 + 37127098-37128279
Length = 393
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = -1
Query: 568 VVPQGGLLAGASRGDHVDLPSEHMNVRDSTRATSAVSVRANQQLSYLGSRLRVVC 404
VV G+L GAS G +D + + ++ + A +V A LS++ S + +C
Sbjct: 170 VVGNSGILLGASHGALIDSHAAVFRLNNARISGFAANVGAKTNLSFINSNVLHLC 224
>06_02_0113 -
11984121-11984462,11984494-11984559,11984943-11985209,
11985327-11985776,11988134-11988208
Length = 399
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/63 (23%), Positives = 28/63 (44%)
Frame = -1
Query: 568 VVPQGGLLAGASRGDHVDLPSEHMNVRDSTRATSAVSVRANQQLSYLGSRLRVVCCCISX 389
++P ++A +R + +H T A + +V S+L + +VC C+S
Sbjct: 336 MLPSPNIMASMTRAVFEPVIVQHFGFSGETMADFSSAVERLSSSSFLEAEFPLVCLCLSL 395
Query: 388 XRA 380
RA
Sbjct: 396 TRA 398
>05_06_0149 - 25991761-25993181,25993246-25993324
Length = 499
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +1
Query: 172 RRLREEDGTMCSSGDWMQPRRPPNCSAR---STKPSPQLTTLTPKVRAFVERRL 324
+R+ E G + +S DW+QP+ +A KP+P++ + P V A + R+
Sbjct: 223 KRMTEAKGVLVNSFDWLQPKALKALAAGVCVPDKPTPRVYCIGPLVDAGRKSRI 276
>06_03_0332 + 19652207-19652995
Length = 262
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +3
Query: 525 SPRLAPARSPPWGTTSPPRITRRPCPTDSLVA*EVHNV 638
SP ++P+ + PW R++R P P + ++H V
Sbjct: 223 SPAMSPSPTRPWTPERVARVSRSPSPVTTTATTDLHVV 260
>04_03_0853 -
20292734-20292968,20293056-20293144,20293239-20294111,
20294203-20294364
Length = 452
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 255 VDEAFPTADHSHSKGSRVRGAQAALCQPEHVHVCDGSETEARA 383
VD F H++ + +RV +A C P H+ + DG E A
Sbjct: 331 VDIVFAGHVHAYERFTRVYNNEANPCGPVHITIGDGGNREGLA 373
>01_03_0117 +
12684729-12685886,12685978-12686145,12686292-12686336,
12686438-12687280
Length = 737
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +1
Query: 454 GQTRQTLPGLNPAR-SYAPT--GDRRGPLGSRRPEVRPGELHLPPGLREGRVRQIP 612
G++ PGL PA AP R P + +P V+P E P G RVR +P
Sbjct: 76 GESPAETPGLPPAGVEDAPPRRSPREKPCPTMQPPVKPPEELSPVGAPRSRVRAMP 131
>11_03_0031 -
9094643-9095824,9095945-9096034,9096141-9096216,
9096759-9096976,9097283-9097512,9097617-9097683,
9097863-9098048,9098164-9098295,9098380-9098492,
9098771-9098777
Length = 766
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = -1
Query: 544 AGASRGDHVDLPSEHMNVRDSTRATSAVSVRANQ 443
AGA RG+ V+L SE M++ D ++ S +V + +
Sbjct: 374 AGALRGEEVELKSEIMSLVDKSKEMSKAAVDSGE 407
>09_04_0038 -
13996505-13996836,13997047-13997077,13997307-13997420,
13997546-13997686,13997787-13997851,13997943-13998039,
13998096-13998257,13998360-13998473,14001263-14001311,
14001967-14002047,14003504-14003561,14003671-14004031,
14004129-14004213,14004320-14004591,14004712-14004914,
14005419-14005494
Length = 746
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = -1
Query: 286 EWSAVGKASSTSQSSLVGGAAASNRHLSTLCRLPHVVFGDGLKMQHVN 143
+WS +A+ S S AAA+ R + PH DG KMQ +
Sbjct: 40 DWSFASRAALMSFRSSSSAAAAAAREETRELAFPHFSALDGAKMQQAS 87
>06_02_0192 + 12872611-12872979
Length = 122
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = +3
Query: 462 TADVARVESRTFICSDGRSTWSPRLAP--ARSPPWGTTSP 575
T A V R F +TW P LAP +R PP TT P
Sbjct: 23 TVKEAAVGDRGFQIQWSPTTWRPDLAPTTSRRPPATTTGP 62
>01_01_0219 + 1863478-1864041,1864459-1865109
Length = 404
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/50 (38%), Positives = 23/50 (46%)
Frame = -3
Query: 302 RTFGVRVVSCGEGFVDLAEQFGGRRGCIQSPLEHIVPSSSRSLRGWP*NA 153
R V VVS F + GRRGC+ EH +P+ LR W NA
Sbjct: 283 RALAVEVVSDERYFPAFRDSCAGRRGCLID--EHYIPTLVSLLR-WRRNA 329
>04_04_1215 - 31803261-31804847,31804927-31805052,31806502-31806879
Length = 696
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 537 APARSPPWGTTSPPRITRRPCPTDS 611
APA +PP +P R+ RRP T S
Sbjct: 13 APAAAPPSAVRTPRRLRRRPLKTAS 37
>03_06_0090 +
31570588-31570710,31570962-31571080,31572215-31572284,
31572544-31573492,31574789-31575699
Length = 723
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -3
Query: 290 VRVVSCGEGFVDLAEQFGGRRGCIQSPLEHIVPSSSRSLRGWP*NAA 150
+R + EG + LA+ G C+ + S+ +L GWP N A
Sbjct: 232 IRALRSCEGLLPLADDLGLVSRCVDAIAAKAAASTPTALFGWPINDA 278
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,141,609
Number of Sequences: 37544
Number of extensions: 422917
Number of successful extensions: 1868
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1867
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -