Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0545
(682 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3810| Best HMM Match : PEPCK (HMM E-Value=0) 64 1e-10
SB_37397| Best HMM Match : PEPCK (HMM E-Value=0) 61 7e-10
SB_37396| Best HMM Match : PEPCK (HMM E-Value=0) 36 0.030
SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.65
SB_35446| Best HMM Match : Mucin (HMM E-Value=1.3) 30 1.5
SB_31478| Best HMM Match : Extensin_2 (HMM E-Value=1.3) 30 2.0
SB_19658| Best HMM Match : zf-AD (HMM E-Value=0.0032) 30 2.0
SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13) 29 4.6
SB_46646| Best HMM Match : zf-AD (HMM E-Value=0.51) 28 6.1
SB_13774| Best HMM Match : Cgr1 (HMM E-Value=0.74) 28 6.1
SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_54480| Best HMM Match : Folate_rec (HMM E-Value=1.5) 28 8.0
SB_54211| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
>SB_3810| Best HMM Match : PEPCK (HMM E-Value=0)
Length = 707
Score = 63.7 bits (148), Expect = 1e-10
Identities = 27/61 (44%), Positives = 39/61 (63%)
Frame = +3
Query: 327 LCQPEHVHVCDGSETEARAXXXXXXXXXXXKRLPKYDNCWLARTDTADVARVESRTFICS 506
LCQP+ +H+CDGS E ++ +L K +N ++ RTD DVARVES+TFIC+
Sbjct: 169 LCQPDKIHICDGSPEENQSLVDFLVKKGTCFKLTKRENSYVVRTDPGDVARVESKTFICT 228
Query: 507 D 509
+
Sbjct: 229 E 229
Score = 31.9 bits (69), Expect = 0.49
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = +2
Query: 512 EIDVVPSARAGQKSA---LGNYISPPDYEKAVSDRFPGCMR 625
E D VP + G+ LG ++S +A+ +RFPGCM+
Sbjct: 231 ERDAVPDFKKGKDGVVGQLGRWLSVEKANQALGERFPGCMK 271
>SB_37397| Best HMM Match : PEPCK (HMM E-Value=0)
Length = 613
Score = 61.3 bits (142), Expect = 7e-10
Identities = 28/62 (45%), Positives = 36/62 (58%)
Frame = +3
Query: 321 AALCQPEHVHVCDGSETEARAXXXXXXXXXXXKRLPKYDNCWLARTDTADVARVESRTFI 500
A L P +H+CDGS+ E +A L K++NC+ TD DVARVESRTFI
Sbjct: 26 AKLMTPAQIHICDGSDAENKANIEVLLNKGAAVPLEKHENCYAVFTDPQDVARVESRTFI 85
Query: 501 CS 506
C+
Sbjct: 86 CT 87
Score = 38.3 bits (85), Expect = 0.006
Identities = 15/17 (88%), Positives = 17/17 (100%)
Frame = +1
Query: 631 TMYVIPFSMGPVGSPLS 681
TMYV+PFSMGPVGSP+S
Sbjct: 130 TMYVLPFSMGPVGSPIS 146
>SB_37396| Best HMM Match : PEPCK (HMM E-Value=0)
Length = 549
Score = 35.9 bits (79), Expect = 0.030
Identities = 14/16 (87%), Positives = 16/16 (100%)
Frame = +1
Query: 634 MYVIPFSMGPVGSPLS 681
MYV+PFSMGPVGSP+S
Sbjct: 1 MYVMPFSMGPVGSPIS 16
>SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1717
Score = 31.5 bits (68), Expect = 0.65
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -1
Query: 616 TRESVGHGLLVIRGGDVVPQGGLLAGASRGDHVDLPSEH 500
T GHG + + GG V GG AG G HVD + +
Sbjct: 319 TMNMTGHGEVNVNGGSVTGSGGGGAGGRIGIHVDFQNNY 357
>SB_35446| Best HMM Match : Mucin (HMM E-Value=1.3)
Length = 241
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Frame = +1
Query: 175 RLREEDGTMCSSGDWMQPRRPPNCSARSTKPSPQLTTLTPKV--RAFVERRLLCASRSTC 348
R ++ T C SGD P R S S S L T TP + R F+ S+ T
Sbjct: 122 RTADQGSTACRSGDSASPSRTVQISTVSNGVSRHLNTRTPPISARPFIAMSTTQQSKITK 181
Query: 349 TCATA 363
T A
Sbjct: 182 TITDA 186
>SB_31478| Best HMM Match : Extensin_2 (HMM E-Value=1.3)
Length = 515
Score = 29.9 bits (64), Expect = 2.0
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Frame = +1
Query: 475 PGLNPARSYAPTGDRRGPLGSRRPEVRP----GELHLPPGLREGRVRQIPW 615
PG +R + P G RGP G R P+ RP G PP R G + PW
Sbjct: 326 PGNQNSRGFNPAG--RGPAGGREPQDRPWSNDGPFGRPPDDR-GPQDRPPW 373
>SB_19658| Best HMM Match : zf-AD (HMM E-Value=0.0032)
Length = 227
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 500 YERAGFNPGNVCRVCPGQPTVIVFGQ 423
Y ++ FNP N CRVC + V GQ
Sbjct: 32 YAKSLFNPNNFCRVCNANTSKRVLGQ 57
>SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)
Length = 1819
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 540 PARSPPWGTTSPPRITRRPCPTDSLV 617
P R P WGTT+ P T C S+V
Sbjct: 977 PTREPKWGTTAYPTSTFINCSASSVV 1002
>SB_46646| Best HMM Match : zf-AD (HMM E-Value=0.51)
Length = 287
Score = 28.3 bits (60), Expect = 6.1
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 494 RAGFNPGNVCRVCPGQPTVIVFGQ 423
++ FNP N CR+C + V GQ
Sbjct: 121 KSSFNPNNFCRLCNANTSNCVLGQ 144
>SB_13774| Best HMM Match : Cgr1 (HMM E-Value=0.74)
Length = 668
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -1
Query: 580 RGGDVVPQGGLLAGASRGDHV 518
R GDV+P GG + RGD V
Sbjct: 526 RSGDVIPLGGTAGDSERGDEV 546
>SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1468
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 513 RSTWSPRLAPARSPPWGTTSPPRITRRP 596
R+ P P+R+ P TT PPR T P
Sbjct: 1117 RTKPEPTTEPSRTKPEPTTEPPRTTSEP 1144
>SB_54480| Best HMM Match : Folate_rec (HMM E-Value=1.5)
Length = 635
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +2
Query: 545 QKSALGNYISPPDYEKAVSDRFPGCMRGAQCT*YRSRW 658
Q + G+Y+ P + R PGC RG++ + W
Sbjct: 334 QAALQGDYLGVPGDPSCATGRLPGCTRGSKLRYRATTW 371
>SB_54211| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 796
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = +3
Query: 522 WSPRLAPARSPPWGTTSPPRITRRPCPTDS 611
W PRL P P +P I R C T S
Sbjct: 146 WEPRLYPLAQPDLNYAAPEFILSRTCDTSS 175
>SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3306
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -1
Query: 667 PQGPSRTVSRTLCTSHATRESVGHGLLVIRGGD 569
P GPS+ + L A ES G LL + G D
Sbjct: 206 PSGPSKVLKDKLYKGAAAAESAGQNLLSLEGPD 238
>SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1417
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 504 SDGRSTWSPRLAPARSPPWGTTSPPRITRRPCPT 605
S ++T SP + SPP TTSP + T P P+
Sbjct: 697 SPPQTTTSPSQQTSTSPPQTTTSPSQQTTSPPPS 730
>SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/45 (33%), Positives = 16/45 (35%)
Frame = +1
Query: 448 WPGQTRQTLPGLNPARSYAPTGDRRGPLGSRRPEVRPGELHLPPG 582
W R PG+ P R P G P G R P G P G
Sbjct: 392 WGPGPRGMGPGMGPPRPMGPPGPHGPPFGPRGPPPHGGPPRGPMG 436
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,041,289
Number of Sequences: 59808
Number of extensions: 427604
Number of successful extensions: 1546
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1545
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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