Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0545
(682 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83122-8|CAF31484.1| 582|Caenorhabditis elegans Hypothetical pr... 51 7e-07
Z83122-7|CAF31483.1| 618|Caenorhabditis elegans Hypothetical pr... 51 7e-07
Z83122-5|CAB05600.1| 654|Caenorhabditis elegans Hypothetical pr... 51 7e-07
Z83122-6|CAF31482.1| 587|Caenorhabditis elegans Hypothetical pr... 47 1e-05
AF040660-8|AAN65288.1| 594|Caenorhabditis elegans Hypothetical ... 47 1e-05
AF040660-5|AAC71149.1| 651|Caenorhabditis elegans Hypothetical ... 47 1e-05
AF040660-6|AAN65286.1| 541|Caenorhabditis elegans Hypothetical ... 34 0.082
AF125442-11|AAD12791.1| 624|Caenorhabditis elegans Hypothetical... 30 1.8
Z81473-6|CAB03895.2| 657|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z82259-10|CAD36480.1| 439|Caenorhabditis elegans Hypothetical p... 29 4.1
AL022473-2|CAA18549.2| 439|Caenorhabditis elegans Hypothetical ... 29 4.1
AL022473-1|CAJ43448.1| 339|Caenorhabditis elegans Hypothetical ... 29 4.1
AF332211-1|AAK17982.1| 439|Caenorhabditis elegans nuclear recep... 29 4.1
Z82256-1|CAB05113.1| 627|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical pr... 28 7.1
U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical pr... 28 7.1
U41532-5|AAF99906.2| 111|Caenorhabditis elegans Hypothetical pr... 28 7.1
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 27 9.4
>Z83122-8|CAF31484.1| 582|Caenorhabditis elegans Hypothetical
protein R11A5.4b protein.
Length = 582
Score = 51.2 bits (117), Expect = 7e-07
Identities = 25/75 (33%), Positives = 40/75 (53%)
Frame = +3
Query: 291 SKGSRVRGAQAALCQPEHVHVCDGSETEARAXXXXXXXXXXXKRLPKYDNCWLARTDTAD 470
+K R +A L +P + +CDGS+ EA +L Y+N ++ RTD D
Sbjct: 55 AKVQRFIAEKAELMRPRGIFICDGSQHEADELIDKLIERGMLSKLEAYENNYICRTDPKD 114
Query: 471 VARVESRTFICSDGR 515
VARVES+T++ + +
Sbjct: 115 VARVESKTWMVTKNK 129
Score = 36.3 bits (80), Expect = 0.020
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 506 RREIDVVPSARAGQKSALGNYISPPDYEKAVSDRFPGCMRG 628
+ + D V + G + +G++++P D + RFPGCM G
Sbjct: 127 KNKYDTVTHTKEGVEPIMGHWLAPEDLATELDSRFPGCMAG 167
Score = 36.3 bits (80), Expect = 0.020
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = +1
Query: 634 MYVIPFSMGPVGSPLS 681
MYVIPFSMGPVG PLS
Sbjct: 170 MYVIPFSMGPVGGPLS 185
>Z83122-7|CAF31483.1| 618|Caenorhabditis elegans Hypothetical
protein R11A5.4d protein.
Length = 618
Score = 51.2 bits (117), Expect = 7e-07
Identities = 25/75 (33%), Positives = 40/75 (53%)
Frame = +3
Query: 291 SKGSRVRGAQAALCQPEHVHVCDGSETEARAXXXXXXXXXXXKRLPKYDNCWLARTDTAD 470
+K R +A L +P + +CDGS+ EA +L Y+N ++ RTD D
Sbjct: 19 AKVQRFIAEKAELMRPRGIFICDGSQHEADELIDKLIERGMLSKLEAYENNYICRTDPKD 78
Query: 471 VARVESRTFICSDGR 515
VARVES+T++ + +
Sbjct: 79 VARVESKTWMVTKNK 93
Score = 36.3 bits (80), Expect = 0.020
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 506 RREIDVVPSARAGQKSALGNYISPPDYEKAVSDRFPGCMRG 628
+ + D V + G + +G++++P D + RFPGCM G
Sbjct: 91 KNKYDTVTHTKEGVEPIMGHWLAPEDLATELDSRFPGCMAG 131
Score = 36.3 bits (80), Expect = 0.020
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = +1
Query: 634 MYVIPFSMGPVGSPLS 681
MYVIPFSMGPVG PLS
Sbjct: 134 MYVIPFSMGPVGGPLS 149
>Z83122-5|CAB05600.1| 654|Caenorhabditis elegans Hypothetical
protein R11A5.4a protein.
Length = 654
Score = 51.2 bits (117), Expect = 7e-07
Identities = 25/75 (33%), Positives = 40/75 (53%)
Frame = +3
Query: 291 SKGSRVRGAQAALCQPEHVHVCDGSETEARAXXXXXXXXXXXKRLPKYDNCWLARTDTAD 470
+K R +A L +P + +CDGS+ EA +L Y+N ++ RTD D
Sbjct: 55 AKVQRFIAEKAELMRPRGIFICDGSQHEADELIDKLIERGMLSKLEAYENNYICRTDPKD 114
Query: 471 VARVESRTFICSDGR 515
VARVES+T++ + +
Sbjct: 115 VARVESKTWMVTKNK 129
Score = 36.3 bits (80), Expect = 0.020
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 506 RREIDVVPSARAGQKSALGNYISPPDYEKAVSDRFPGCMRG 628
+ + D V + G + +G++++P D + RFPGCM G
Sbjct: 127 KNKYDTVTHTKEGVEPIMGHWLAPEDLATELDSRFPGCMAG 167
Score = 36.3 bits (80), Expect = 0.020
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = +1
Query: 634 MYVIPFSMGPVGSPLS 681
MYVIPFSMGPVG PLS
Sbjct: 170 MYVIPFSMGPVGGPLS 185
>Z83122-6|CAF31482.1| 587|Caenorhabditis elegans Hypothetical
protein R11A5.4c protein.
Length = 587
Score = 47.2 bits (107), Expect = 1e-05
Identities = 21/61 (34%), Positives = 34/61 (55%)
Frame = +3
Query: 333 QPEHVHVCDGSETEARAXXXXXXXXXXXKRLPKYDNCWLARTDTADVARVESRTFICSDG 512
+P + +CDGS+ EA +L Y+N ++ RTD DVARVES+T++ +
Sbjct: 2 RPRGIFICDGSQHEADELIDKLIERGMLSKLEAYENNYICRTDPKDVARVESKTWMVTKN 61
Query: 513 R 515
+
Sbjct: 62 K 62
Score = 36.3 bits (80), Expect = 0.020
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 506 RREIDVVPSARAGQKSALGNYISPPDYEKAVSDRFPGCMRG 628
+ + D V + G + +G++++P D + RFPGCM G
Sbjct: 60 KNKYDTVTHTKEGVEPIMGHWLAPEDLATELDSRFPGCMAG 100
Score = 36.3 bits (80), Expect = 0.020
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = +1
Query: 634 MYVIPFSMGPVGSPLS 681
MYVIPFSMGPVG PLS
Sbjct: 103 MYVIPFSMGPVGGPLS 118
>AF040660-8|AAN65288.1| 594|Caenorhabditis elegans Hypothetical
protein W05G11.6d protein.
Length = 594
Score = 47.2 bits (107), Expect = 1e-05
Identities = 25/69 (36%), Positives = 35/69 (50%)
Frame = +3
Query: 294 KGSRVRGAQAALCQPEHVHVCDGSETEARAXXXXXXXXXXXKRLPKYDNCWLARTDTADV 473
K R +A L P +++CDGS+ E L Y+N +L RTD DV
Sbjct: 43 KVQRFVAEKAELMNPAGIYICDGSQKEYDDIVDKLVERGVLTPLKAYENNYLCRTDPRDV 102
Query: 474 ARVESRTFI 500
ARVES+T++
Sbjct: 103 ARVESKTWM 111
Score = 34.3 bits (75), Expect = 0.082
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = +1
Query: 634 MYVIPFSMGPVGSPLS 681
MYV+P+SMGP+G PLS
Sbjct: 157 MYVVPYSMGPIGGPLS 172
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 542 GQKSALGNYISPPDYEKAVSDRFPGCMRG 628
G + +G ++S + + RFPGCM G
Sbjct: 126 GVRPIMGQWMSEEQFGVELDSRFPGCMAG 154
>AF040660-5|AAC71149.1| 651|Caenorhabditis elegans Hypothetical
protein W05G11.6a protein.
Length = 651
Score = 47.2 bits (107), Expect = 1e-05
Identities = 25/69 (36%), Positives = 35/69 (50%)
Frame = +3
Query: 294 KGSRVRGAQAALCQPEHVHVCDGSETEARAXXXXXXXXXXXKRLPKYDNCWLARTDTADV 473
K R +A L P +++CDGS+ E L Y+N +L RTD DV
Sbjct: 43 KVQRFVAEKAELMNPAGIYICDGSQKEYDDIVDKLVERGVLTPLKAYENNYLCRTDPRDV 102
Query: 474 ARVESRTFI 500
ARVES+T++
Sbjct: 103 ARVESKTWM 111
Score = 34.3 bits (75), Expect = 0.082
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = +1
Query: 634 MYVIPFSMGPVGSPLS 681
MYV+P+SMGP+G PLS
Sbjct: 157 MYVVPYSMGPIGGPLS 172
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 542 GQKSALGNYISPPDYEKAVSDRFPGCMRG 628
G + +G ++S + + RFPGCM G
Sbjct: 126 GVRPIMGQWMSEEQFGVELDSRFPGCMAG 154
>AF040660-6|AAN65286.1| 541|Caenorhabditis elegans Hypothetical
protein W05G11.6b protein.
Length = 541
Score = 34.3 bits (75), Expect = 0.082
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = +1
Query: 634 MYVIPFSMGPVGSPLS 681
MYV+P+SMGP+G PLS
Sbjct: 47 MYVVPYSMGPIGGPLS 62
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 542 GQKSALGNYISPPDYEKAVSDRFPGCMRG 628
G + +G ++S + + RFPGCM G
Sbjct: 16 GVRPIMGQWMSEEQFGVELDSRFPGCMAG 44
>AF125442-11|AAD12791.1| 624|Caenorhabditis elegans Hypothetical
protein H04M03.1 protein.
Length = 624
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +1
Query: 631 TMYVIPFSMGPVGS 672
TMYV+PFSMG +GS
Sbjct: 181 TMYVVPFSMGTIGS 194
>Z81473-6|CAB03895.2| 657|Caenorhabditis elegans Hypothetical
protein C17D12.7 protein.
Length = 657
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +1
Query: 223 QPRRPPNCSARSTKPSP-QLTTLTPKVRAFVE 315
QPRRPP CSA S+ S L T+T ++ V+
Sbjct: 527 QPRRPPYCSATSSDGSAHSLATVTQQLMGTVK 558
>Z82259-10|CAD36480.1| 439|Caenorhabditis elegans Hypothetical
protein H27C11.1a protein.
Length = 439
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -1
Query: 454 RANQQLSYLGSRLRVVCCCISXXRALASVSEPSHTCTCSGWHRAACAP 311
+A++QL Y R R+V I R A +++ HT RA+CAP
Sbjct: 202 QADEQLCYDSER-RLVTWAIDWCRQTAEIADVHHTNDKISLLRASCAP 248
>AL022473-2|CAA18549.2| 439|Caenorhabditis elegans Hypothetical
protein H27C11.1a protein.
Length = 439
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -1
Query: 454 RANQQLSYLGSRLRVVCCCISXXRALASVSEPSHTCTCSGWHRAACAP 311
+A++QL Y R R+V I R A +++ HT RA+CAP
Sbjct: 202 QADEQLCYDSER-RLVTWAIDWCRQTAEIADVHHTNDKISLLRASCAP 248
>AL022473-1|CAJ43448.1| 339|Caenorhabditis elegans Hypothetical
protein H27C11.1b protein.
Length = 339
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -1
Query: 454 RANQQLSYLGSRLRVVCCCISXXRALASVSEPSHTCTCSGWHRAACAP 311
+A++QL Y R R+V I R A +++ HT RA+CAP
Sbjct: 102 QADEQLCYDSER-RLVTWAIDWCRQTAEIADVHHTNDKISLLRASCAP 148
>AF332211-1|AAK17982.1| 439|Caenorhabditis elegans nuclear receptor
NHR-97 protein.
Length = 439
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -1
Query: 454 RANQQLSYLGSRLRVVCCCISXXRALASVSEPSHTCTCSGWHRAACAP 311
+A++QL Y R R+V I R A +++ HT RA+CAP
Sbjct: 202 QADEQLCYDSER-RLVTWAIDWCRQTAEIADVHHTNDKISLLRASCAP 248
>Z82256-1|CAB05113.1| 627|Caenorhabditis elegans Hypothetical
protein B0513.1 protein.
Length = 627
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 205 SSGDWMQPRRPPNCSARSTKPSPQLTTLTP 294
+SGD P P+ + +T +P+LT+LTP
Sbjct: 439 NSGDQWSPLFSPSTWSNNTNANPRLTSLTP 468
>Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical protein
W06A7.3f protein.
Length = 2488
Score = 27.9 bits (59), Expect = 7.1
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Frame = -1
Query: 682 SREEIPQGPSRTVSRTLCTSHATRESVGHGLL-----VIRGGDVVPQGGLLAGASRGDHV 518
+ E++ Q P + S TS S+G+ ++ V+ GG V+P G L + + H
Sbjct: 915 NEEDVDQDPIQ--SEEPLTSQEGESSIGNKIVAVVGSVLLGGAVIPYGVLASNENEDAHA 972
Query: 517 DLPSEHMNVRDSTR 476
D E DSTR
Sbjct: 973 DREVEETG--DSTR 984
>Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical protein
W06A7.3c protein.
Length = 2484
Score = 27.9 bits (59), Expect = 7.1
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Frame = -1
Query: 682 SREEIPQGPSRTVSRTLCTSHATRESVGHGLL-----VIRGGDVVPQGGLLAGASRGDHV 518
+ E++ Q P + S TS S+G+ ++ V+ GG V+P G L + + H
Sbjct: 915 NEEDVDQDPIQ--SEEPLTSQEGESSIGNKIVAVVGSVLLGGAVIPYGVLASNENEDAHA 972
Query: 517 DLPSEHMNVRDSTR 476
D E DSTR
Sbjct: 973 DREVEETG--DSTR 984
>Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical protein
W06A7.3a protein.
Length = 2607
Score = 27.9 bits (59), Expect = 7.1
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Frame = -1
Query: 682 SREEIPQGPSRTVSRTLCTSHATRESVGHGLL-----VIRGGDVVPQGGLLAGASRGDHV 518
+ E++ Q P + S TS S+G+ ++ V+ GG V+P G L + + H
Sbjct: 915 NEEDVDQDPIQ--SEEPLTSQEGESSIGNKIVAVVGSVLLGGAVIPYGVLASNENEDAHA 972
Query: 517 DLPSEHMNVRDSTR 476
D E DSTR
Sbjct: 973 DREVEETG--DSTR 984
>U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical
protein F54D11.2 protein.
Length = 1145
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Frame = +1
Query: 427 PNTITVGWPGQTRQTLPGLNPARSYAPTGDRRGPLG---SRRPEVRPGELHL 573
P T W Q+R L G + R P D P+G R+ + R HL
Sbjct: 419 PKTDDFYWSAQSRTKLKGSSKEREETPAFDEESPIGGDEKRQQKARESISHL 470
>U41532-5|AAF99906.2| 111|Caenorhabditis elegans Hypothetical
protein F11D5.6 protein.
Length = 111
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 510 GRSTWSPRLAPARSPPWGTTSPPRITRRPCPTDSL 614
GR + +P PA PP S P +R C D+L
Sbjct: 73 GRLSKTPSSTPAPPPPQPVVSTPAKAKRQCKFDNL 107
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Frame = +1
Query: 478 GLNPARSYAPTGDRRGPLGSRRPEVRPGELHL--PPGLREGR 597
G N P G GP+ S P R G H+ PP R GR
Sbjct: 750 GFNAGAPPPPFGRGAGPMSSFPPPPRGGMHHMPPPPSFRGGR 791
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,132,502
Number of Sequences: 27780
Number of extensions: 312547
Number of successful extensions: 1122
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1120
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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