Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0545
         (682 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    25   0.67 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      25   0.88 
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   4.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.2  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   6.2  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    21   8.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.2  

>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = +1

Query: 601 RQIPWL--HERCTMYVIPFSMGPVGSP 675
           R++ W   H+  +M ++P+ M P G P
Sbjct: 59  RRMKWKKEHKMASMNIVPYHMSPYGHP 85


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 301 EPLE*EWSAVGKASSTSQSSLVGGAAASNR 212
           EPLE      G A+  ++ S   GAAAS+R
Sbjct: 243 EPLELTGGNSGNAAGNNEDSSDSGAAASDR 272


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -1

Query: 580 RGGDVVPQGGLLAGASRGDHVDLP-SEHMNVRDSTRATSAVSV 455
           RG D  P+G +LA  +  +H D   +  +N R++T     V +
Sbjct: 461 RGLDFTPRGAVLARFTHLNHADFSYTIVINNRNNTSMKGTVRI 503


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -3

Query: 320  LRSTNARTFGVRVVSCGEGFVDLAEQFGGRRGCIQSPLEHIVPS 189
            L+++    + VR + CG    D    F G + C+    EH V S
Sbjct: 1584 LKASEDYRYSVRGL-CGNFDHDSTNDFVGPKNCLFRKPEHFVAS 1626


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +1

Query: 265 PSPQLTTLTPKVRAFVERRLLCASRSTCTCATA 363
           PSP+  T+TP+ +  + + L        T + A
Sbjct: 132 PSPEWDTVTPEAKNLINQMLTVNPSKRITASEA 164


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -3

Query: 284 VVSCGEGFVD 255
           +V+CG GF+D
Sbjct: 208 IVACGAGFID 217


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = +3

Query: 498  ICSDGRSTWSPRLAPARSPPWGTTSPPRITRRPCP 602
            +C + R T  PRLA   S       P     RP P
Sbjct: 1332 LCRNSRRTPVPRLAQDSSEDESYRGPSASGGRPVP 1366


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,749
Number of Sequences: 438
Number of extensions: 3810
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)