Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0545
         (682 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g24316.1 68418.m02864 proline-rich family protein contains pr...    32   0.40 
At3g20500.1 68416.m02596 calcineurin-like phosphoesterase family...    29   3.8  
At3g52820.1 68416.m05820 purple acid phosphatase (PAP22) identic...    28   6.6  
At5g48180.1 68418.m05952 kelch repeat-containing protein contain...    27   8.7  
At4g07350.1 68417.m01129 hypothetical protein                          27   8.7  
At4g04990.1 68417.m00728 expressed protein contains Pfam domain ...    27   8.7  
At3g22270.1 68416.m02815 expressed protein                             27   8.7  
At3g16730.1 68416.m02136 expressed protein ; expression supporte...    27   8.7  
At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identica...    27   8.7  
At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identica...    27   8.7  

>At5g24316.1 68418.m02864 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 125

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 20/59 (33%), Positives = 25/59 (42%)
 Frame = +3

Query: 420 RLPKYDNCWLARTDTADVARVESRTFICSDGRSTWSPRLAPARSPPWGTTSPPRITRRP 596
           R PK  +  +  T   +V   E   +   D    WSPR  P R  P+    PP  TRRP
Sbjct: 62  RPPKPSDPTIPGTQVDEVVTKEPTVYNKED-YGDWSPRPIPKRPMPYVPPPPPPPTRRP 119


>At3g20500.1 68416.m02596 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 437

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +3

Query: 255 VDEAFPTADHSHSKGSRVRGAQAALCQPEHVHVCDGSETEARA 383
           VD  F    H++ +  RV   ++  C P H+ + DG   E  A
Sbjct: 321 VDIVFTGHVHAYERTKRVNNGKSDPCGPVHITIGDGGNREGLA 363


>At3g52820.1 68416.m05820 purple acid phosphatase (PAP22) identical
           to purple acid phosphatase (PAP22)GI:20257494 from
           [Arabidopsis thaliana]
          Length = 434

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +3

Query: 255 VDEAFPTADHSHSKGSRVRGAQAALCQPEHVHVCDGSETEARA 383
           VD  F    H++ +  RV   +A  C P H+ + DG   E  A
Sbjct: 322 VDVVFSGHVHAYERFKRVYNNKADPCGPIHITIGDGGNREGLA 364


>At5g48180.1 68418.m05952 kelch repeat-containing protein contains
           Pfam PF01344: Kelch motif (5 repeats) ;similar to Tip
           elongation aberrant protein 1 (Cell polarity protein
           tea1) (SP:P87061) [Schizosaccharomyces pombe]
          Length = 326

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
 Frame = -1

Query: 334 WHRAACAPRTREPLE*EWSAVGKASSTSQSSLV--GGAAASNRHLSTL 197
           W R  C     +P +  W A  KA    +  L+  GG + +N  L  L
Sbjct: 268 WERIVCGNEEEKPSQRGWCAFTKAVKDGEEGLLVHGGNSPTNERLDDL 315


>At4g07350.1 68417.m01129 hypothetical protein
          Length = 330

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 232 RPPNCSARSTKPSPQLTTLTPKVRA 306
           +PP+ S RST+ SPQ    TPK ++
Sbjct: 53  KPPDNSLRSTQSSPQKIPHTPKSKS 77


>At4g04990.1 68417.m00728 expressed protein contains Pfam domain
           PF05553: Cotton fiber expressed protein
          Length = 303

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 196 TMCSSGDWMQPRRPPNCSARSTKPSPQLTTLTP 294
           T  S+  W  P R P+   R+ +P+P L++L+P
Sbjct: 198 TKMSTSSWPLPSRSPS---RARRPTPSLSSLSP 227


>At3g22270.1 68416.m02815 expressed protein
          Length = 782

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 526 PLGSRRPEVRPGELHLPPGLREG 594
           P G+R P+  PG LH  P L  G
Sbjct: 187 PPGNRSPQASPGNLHRAPSLPGG 209


>At3g16730.1 68416.m02136 expressed protein ; expression supported
           by MPSS
          Length = 695

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 280 SAVGKASSTSQSSLVGGAAASNRHLSTLC 194
           S+VG++  +++ S VG    +N HLS +C
Sbjct: 240 SSVGRSGGSARKSSVGKNQGTNVHLSPIC 268


>At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identical
           to gi|10880495|gb|AAG24277
          Length = 176

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 540 PARSPPWGTTSPPRITRRPCPTD 608
           P  +PP  TTSPP +T  P P +
Sbjct: 47  PVSAPPPVTTSPPPVTTAPPPAN 69


>At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identical
           to gi|10880495|gb|AAG24277
          Length = 191

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 540 PARSPPWGTTSPPRITRRPCPTD 608
           P  +PP  TTSPP +T  P P +
Sbjct: 47  PVSAPPPVTTSPPPVTTAPPPAN 69


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,309,928
Number of Sequences: 28952
Number of extensions: 286917
Number of successful extensions: 1082
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)