Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0544
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    31   0.23 
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    28   1.2  
SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc...    28   1.6  
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    28   1.6  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    26   6.6  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   8.8  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    25   8.8  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
 Frame = -2

Query: 467 TS*FTPSNAESIHVLSPSSICGSLVLILSKSLVNGTATS*TDEND--TNATYSNLA 306
           +S +TPS+ ES  +L PSS+  S +L  S S+    ++S    +D  T++T+S+L+
Sbjct: 125 SSEYTPSSTESSSLLDPSSV-SSAILPSSTSVEVSISSSSLSSSDPLTSSTFSSLS 179


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -2

Query: 476 SFITS*FTPSNAESIHVLSPSSICGSLVLILSKSLVNGTATS*T-DENDTNATYSNLA 306
           S ITS  T S     H +SP S+ G+    LS  L N   +  T    D N T+ NLA
Sbjct: 366 SSITSLPTASFCPVKHGVSPPSLAGNQPSPLSSPLTNSNVSPSTICSPDNNVTFVNLA 423


>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 10/34 (29%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +1

Query: 388 IRTKLPQIEEGDK-TCIDSALLGVNQLVMNEWGH 486
           ++T     +E DK TC+D  +  ++Q++  +WG+
Sbjct: 421 VQTIFENCKEKDKRTCLDEIINNMDQIICGQWGN 454


>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = +3

Query: 216 QSSVRIQLKITQDFNSCRGNKFIFRLLKRSCQIRVRCVSV 335
           + S+R+ L ++++F  C G   +   L  +CQ+R+  +S+
Sbjct: 3   EMSIRLFLHLSKEFYDCCGLFLLTFFLLTTCQLRILSLSI 42


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +3

Query: 564  SLPLPTLYPVKIHILPIVSPHDPCLQHAMPLYQKIID--QATVTANNSNGTIS 716
            SLP+ T Y   IHI P+          A+  ++ ++D  Q+ VT  +S+ T S
Sbjct: 1959 SLPIETAYYYSIHIRPVSEFKFNWTSEAIS-WKDLVDNKQSLVTCQHSDNTFS 2010


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 91   TIHYSNTSMVTLYIAILEVMFWC 23
            TI+YS  S    YI    V+ WC
Sbjct: 1761 TINYSQQSKSQFYILCKNVLLWC 1783


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -2

Query: 545 SNSTNSTASISYQIICIGVWCPHSFITS*FTPSNAESIHVLSPSSICGS 399
           +NST+ST+S         ++ P    TS  + S+A  +H LSP S   S
Sbjct: 42  NNSTSSTSSQKPNTSFTSLFGPRKQTTSSPSFSHAAPLHPLSPPSFTHS 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,089,743
Number of Sequences: 5004
Number of extensions: 63470
Number of successful extensions: 172
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)