BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0544 (753 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 31 0.23 SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 28 1.2 SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc... 28 1.6 SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo... 28 1.6 SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 26 6.6 SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 25 8.8 SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 25 8.8 >SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 534 Score = 30.7 bits (66), Expect = 0.23 Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 2/56 (3%) Frame = -2 Query: 467 TS*FTPSNAESIHVLSPSSICGSLVLILSKSLVNGTATS*TDEND--TNATYSNLA 306 +S +TPS+ ES +L PSS+ S +L S S+ ++S +D T++T+S+L+ Sbjct: 125 SSEYTPSSTESSSLLDPSSV-SSAILPSSTSVEVSISSSSLSSSDPLTSSTFSSLS 179 >SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccharomyces pombe|chr 1|||Manual Length = 569 Score = 28.3 bits (60), Expect = 1.2 Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Frame = -2 Query: 476 SFITS*FTPSNAESIHVLSPSSICGSLVLILSKSLVNGTATS*T-DENDTNATYSNLA 306 S ITS T S H +SP S+ G+ LS L N + T D N T+ NLA Sbjct: 366 SSITSLPTASFCPVKHGVSPPSLAGNQPSPLSSPLTNSNVSPSTICSPDNNVTFVNLA 423 >SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces pombe|chr 1|||Manual Length = 581 Score = 27.9 bits (59), Expect = 1.6 Identities = 10/34 (29%), Positives = 21/34 (61%), Gaps = 1/34 (2%) Frame = +1 Query: 388 IRTKLPQIEEGDK-TCIDSALLGVNQLVMNEWGH 486 ++T +E DK TC+D + ++Q++ +WG+ Sbjct: 421 VQTIFENCKEKDKRTCLDEIINNMDQIICGQWGN 454 >SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharomyces pombe|chr 3|||Manual Length = 418 Score = 27.9 bits (59), Expect = 1.6 Identities = 11/40 (27%), Positives = 24/40 (60%) Frame = +3 Query: 216 QSSVRIQLKITQDFNSCRGNKFIFRLLKRSCQIRVRCVSV 335 + S+R+ L ++++F C G + L +CQ+R+ +S+ Sbjct: 3 EMSIRLFLHLSKEFYDCCGLFLLTFFLLTTCQLRILSLSI 42 >SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schizosaccharomyces pombe|chr 2|||Manual Length = 3071 Score = 25.8 bits (54), Expect = 6.6 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%) Frame = +3 Query: 564 SLPLPTLYPVKIHILPIVSPHDPCLQHAMPLYQKIID--QATVTANNSNGTIS 716 SLP+ T Y IHI P+ A+ ++ ++D Q+ VT +S+ T S Sbjct: 1959 SLPIETAYYYSIHIRPVSEFKFNWTSEAIS-WKDLVDNKQSLVTCQHSDNTFS 2010 >SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 2052 Score = 25.4 bits (53), Expect = 8.8 Identities = 10/23 (43%), Positives = 12/23 (52%) Frame = -3 Query: 91 TIHYSNTSMVTLYIAILEVMFWC 23 TI+YS S YI V+ WC Sbjct: 1761 TINYSQQSKSQFYILCKNVLLWC 1783 >SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosaccharomyces pombe|chr 3|||Manual Length = 877 Score = 25.4 bits (53), Expect = 8.8 Identities = 17/49 (34%), Positives = 25/49 (51%) Frame = -2 Query: 545 SNSTNSTASISYQIICIGVWCPHSFITS*FTPSNAESIHVLSPSSICGS 399 +NST+ST+S ++ P TS + S+A +H LSP S S Sbjct: 42 NNSTSSTSSQKPNTSFTSLFGPRKQTTSSPSFSHAAPLHPLSPPSFTHS 90 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,089,743 Number of Sequences: 5004 Number of extensions: 63470 Number of successful extensions: 172 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 162 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 172 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 359287726 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -