Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0544
         (753 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0260 + 14990324-14990916,14991055-14991245,14997427-149974...    30   2.3  
07_03_0151 - 14465479-14465675,14466280-14466401,14466934-144670...    29   4.0  

>08_02_0260 +
           14990324-14990916,14991055-14991245,14997427-14997495,
           14998134-14999221
          Length = 646

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = -2

Query: 542 NSTNSTASISYQIICIGVWCPHSFITS*FTPSNAESIHVLSPS 414
           + +NST+ ++++++ IG WC  S  T    PS +E I +   S
Sbjct: 585 DGSNSTSEVAHKLVIIGFWCIQSAPTD--RPSMSEVIDMFDRS 625


>07_03_0151 -
           14465479-14465675,14466280-14466401,14466934-14467081,
           14467146-14467167,14467299-14467393,14467395-14467438,
           14467750-14467841,14467911-14467982,14468188-14468229,
           14468333-14468494,14468631-14468683,14468808-14468925,
           14468974-14469150,14469573-14469639,14470195-14470273,
           14473805-14473862,14474257-14474346,14474429-14474540,
           14474649-14474912,14475361-14475463,14476200-14476278,
           14476748-14476852
          Length = 766

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 9/32 (28%), Positives = 21/32 (65%)
 Frame = +3

Query: 585 YPVKIHILPIVSPHDPCLQHAMPLYQKIIDQA 680
           +  ++ +LP+ +  +PC++HA+ L Q  ++ A
Sbjct: 125 FHTELELLPVTALENPCIKHAVELEQSFMEGA 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,319,923
Number of Sequences: 37544
Number of extensions: 350148
Number of successful extensions: 791
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)