BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0544 (753 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_39323| Best HMM Match : PPR (HMM E-Value=7.8) 84 1e-16 SB_12904| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1 SB_5912| Best HMM Match : 7tm_1 (HMM E-Value=7.3e-08) 28 9.4 >SB_39323| Best HMM Match : PPR (HMM E-Value=7.8) Length = 493 Score = 84.2 bits (199), Expect = 1e-16 Identities = 37/83 (44%), Positives = 57/83 (68%) Frame = +1 Query: 259 IAVAAINSFLDYLSVHAKLEYVALVSFSSVHDVAVPFTRDFDSIRTKLPQIEEGDKTCID 438 +A+ + +F D+LS KLE+ ALV+FSS+ ++AVPFTRD++ ++ ++ DKTC + Sbjct: 32 LAIQGLYAFFDHLSSKFKLEFTALVAFSSLWEIAVPFTRDYELLKQGCMSVDVYDKTCFE 91 Query: 439 SALLGVNQLVMNEWGHQTPIQII 507 +AL GV V+ EWG P+QII Sbjct: 92 NALTGVAAHVVEEWGTSVPVQII 114 Score = 28.7 bits (61), Expect = 5.4 Identities = 12/15 (80%), Positives = 14/15 (93%) Frame = +2 Query: 170 MPTIILLDVSLSMSR 214 MPT++LLDVSLSM R Sbjct: 1 MPTVVLLDVSLSMLR 15 Score = 28.7 bits (61), Expect = 5.4 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 6/62 (9%) Frame = +3 Query: 507 LITDGSSGVGAIGRNRIIQ------SLPLPTLYPVKIHILPIVSPHDPCLQHAMPLYQKI 668 L+TDGS G G ++ + PLP +P K+H++ + +P + + L+Q++ Sbjct: 115 LVTDGSLGSGVGSLKELLDHRSENANRPLPFPFPSKLHVVCVANPAE--MTGNFLLFQQL 172 Query: 669 ID 674 D Sbjct: 173 CD 174 >SB_12904| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 696 Score = 29.5 bits (63), Expect = 3.1 Identities = 11/26 (42%), Positives = 18/26 (69%) Frame = +3 Query: 243 ITQDFNSCRGNKFIFRLLKRSCQIRV 320 + ++ N GN+F+ R+L RSC+I V Sbjct: 606 LLENTNKASGNEFVLRVLDRSCRILV 631 >SB_5912| Best HMM Match : 7tm_1 (HMM E-Value=7.3e-08) Length = 337 Score = 27.9 bits (59), Expect = 9.4 Identities = 9/22 (40%), Positives = 17/22 (77%) Frame = -1 Query: 189 SKIIVGIFVCRCVYLTIYPFFI 124 SK+I G+F+ C++++ YP+ I Sbjct: 143 SKVITGLFMVLCLFVSFYPWKI 164 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 22,454,026 Number of Sequences: 59808 Number of extensions: 451240 Number of successful extensions: 1037 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 884 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 990 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 2046258890 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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