Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0544
         (753 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39323| Best HMM Match : PPR (HMM E-Value=7.8)                       84   1e-16
SB_12904| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_5912| Best HMM Match : 7tm_1 (HMM E-Value=7.3e-08)                  28   9.4  

>SB_39323| Best HMM Match : PPR (HMM E-Value=7.8)
          Length = 493

 Score = 84.2 bits (199), Expect = 1e-16
 Identities = 37/83 (44%), Positives = 57/83 (68%)
 Frame = +1

Query: 259 IAVAAINSFLDYLSVHAKLEYVALVSFSSVHDVAVPFTRDFDSIRTKLPQIEEGDKTCID 438
           +A+  + +F D+LS   KLE+ ALV+FSS+ ++AVPFTRD++ ++     ++  DKTC +
Sbjct: 32  LAIQGLYAFFDHLSSKFKLEFTALVAFSSLWEIAVPFTRDYELLKQGCMSVDVYDKTCFE 91

Query: 439 SALLGVNQLVMNEWGHQTPIQII 507
           +AL GV   V+ EWG   P+QII
Sbjct: 92  NALTGVAAHVVEEWGTSVPVQII 114



 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = +2

Query: 170 MPTIILLDVSLSMSR 214
           MPT++LLDVSLSM R
Sbjct: 1   MPTVVLLDVSLSMLR 15



 Score = 28.7 bits (61), Expect = 5.4
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
 Frame = +3

Query: 507 LITDGSSGVGAIGRNRIIQ------SLPLPTLYPVKIHILPIVSPHDPCLQHAMPLYQKI 668
           L+TDGS G G      ++       + PLP  +P K+H++ + +P +  +     L+Q++
Sbjct: 115 LVTDGSLGSGVGSLKELLDHRSENANRPLPFPFPSKLHVVCVANPAE--MTGNFLLFQQL 172

Query: 669 ID 674
            D
Sbjct: 173 CD 174


>SB_12904| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 696

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 243 ITQDFNSCRGNKFIFRLLKRSCQIRV 320
           + ++ N   GN+F+ R+L RSC+I V
Sbjct: 606 LLENTNKASGNEFVLRVLDRSCRILV 631


>SB_5912| Best HMM Match : 7tm_1 (HMM E-Value=7.3e-08)
          Length = 337

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -1

Query: 189 SKIIVGIFVCRCVYLTIYPFFI 124
           SK+I G+F+  C++++ YP+ I
Sbjct: 143 SKVITGLFMVLCLFVSFYPWKI 164


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,454,026
Number of Sequences: 59808
Number of extensions: 451240
Number of successful extensions: 1037
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)