BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0544 (753 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF038622-4|AAB94150.1| 337|Caenorhabditis elegans Hypothetical ... 30 1.5 AC024826-3|AAP13746.1| 343|Caenorhabditis elegans Hypothetical ... 29 3.5 AC024826-2|AAF60798.1| 413|Caenorhabditis elegans Hypothetical ... 29 3.5 Z54270-3|CAA91027.2| 560|Caenorhabditis elegans Hypothetical pr... 28 6.2 U55857-1|AAA98026.1| 394|Caenorhabditis elegans Hypothetical pr... 28 6.2 Z70782-2|CAA94839.1| 387|Caenorhabditis elegans Hypothetical pr... 28 8.2 >AF038622-4|AAB94150.1| 337|Caenorhabditis elegans Hypothetical protein R07C12.1 protein. Length = 337 Score = 30.3 bits (65), Expect = 1.5 Identities = 12/21 (57%), Positives = 18/21 (85%) Frame = -2 Query: 440 ESIHVLSPSSICGSLVLILSK 378 E+ + +SP S+CGS+V+ILSK Sbjct: 123 ENFYDISPFSLCGSIVVILSK 143 >AC024826-3|AAP13746.1| 343|Caenorhabditis elegans Hypothetical protein Y55F3AM.6b protein. Length = 343 Score = 29.1 bits (62), Expect = 3.5 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%) Frame = +3 Query: 171 CQR*FCLMCL--YRCQDQSSVRIQLKITQDFNSCR 269 CQ FCL C+ +R +DQ +V + K + CR Sbjct: 233 CQHCFCLDCIRQWRSKDQENVELATKTVRSCPECR 267 >AC024826-2|AAF60798.1| 413|Caenorhabditis elegans Hypothetical protein Y55F3AM.6a protein. Length = 413 Score = 29.1 bits (62), Expect = 3.5 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%) Frame = +3 Query: 171 CQR*FCLMCL--YRCQDQSSVRIQLKITQDFNSCR 269 CQ FCL C+ +R +DQ +V + K + CR Sbjct: 233 CQHCFCLDCIRQWRSKDQENVELATKTVRSCPECR 267 >Z54270-3|CAA91027.2| 560|Caenorhabditis elegans Hypothetical protein F11C1.3 protein. Length = 560 Score = 28.3 bits (60), Expect = 6.2 Identities = 9/29 (31%), Positives = 16/29 (55%) Frame = +3 Query: 654 LYQKIIDQATVTANNSNGTISRGSIYWSR 740 ++Q I+D S+G + G+ YWS+ Sbjct: 31 IFQSIVDSQVYLQQKSDGQLPTGTFYWSK 59 >U55857-1|AAA98026.1| 394|Caenorhabditis elegans Hypothetical protein K08D10.10 protein. Length = 394 Score = 28.3 bits (60), Expect = 6.2 Identities = 12/21 (57%), Positives = 16/21 (76%) Frame = -2 Query: 440 ESIHVLSPSSICGSLVLILSK 378 E + SP S+CGS+V+ILSK Sbjct: 180 EKFYDNSPFSVCGSIVVILSK 200 >Z70782-2|CAA94839.1| 387|Caenorhabditis elegans Hypothetical protein R04B5.3 protein. Length = 387 Score = 27.9 bits (59), Expect = 8.2 Identities = 13/36 (36%), Positives = 19/36 (52%) Frame = +3 Query: 201 YRCQDQSSVRIQLKITQDFNSCRGNKFIFRLLKRSC 308 + C+ Q + +I I SCR NK + +KRSC Sbjct: 57 FECRQQGACKINTIIRSICKSCRLNKCLNLGMKRSC 92 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,919,415 Number of Sequences: 27780 Number of extensions: 347759 Number of successful extensions: 837 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 807 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 837 length of database: 12,740,198 effective HSP length: 80 effective length of database: 10,517,798 effective search space used: 1788025660 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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