Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0544
         (753 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038622-4|AAB94150.1|  337|Caenorhabditis elegans Hypothetical ...    30   1.5  
AC024826-3|AAP13746.1|  343|Caenorhabditis elegans Hypothetical ...    29   3.5  
AC024826-2|AAF60798.1|  413|Caenorhabditis elegans Hypothetical ...    29   3.5  
Z54270-3|CAA91027.2|  560|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U55857-1|AAA98026.1|  394|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z70782-2|CAA94839.1|  387|Caenorhabditis elegans Hypothetical pr...    28   8.2  

>AF038622-4|AAB94150.1|  337|Caenorhabditis elegans Hypothetical
           protein R07C12.1 protein.
          Length = 337

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/21 (57%), Positives = 18/21 (85%)
 Frame = -2

Query: 440 ESIHVLSPSSICGSLVLILSK 378
           E+ + +SP S+CGS+V+ILSK
Sbjct: 123 ENFYDISPFSLCGSIVVILSK 143


>AC024826-3|AAP13746.1|  343|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.6b protein.
          Length = 343

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +3

Query: 171 CQR*FCLMCL--YRCQDQSSVRIQLKITQDFNSCR 269
           CQ  FCL C+  +R +DQ +V +  K  +    CR
Sbjct: 233 CQHCFCLDCIRQWRSKDQENVELATKTVRSCPECR 267


>AC024826-2|AAF60798.1|  413|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.6a protein.
          Length = 413

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +3

Query: 171 CQR*FCLMCL--YRCQDQSSVRIQLKITQDFNSCR 269
           CQ  FCL C+  +R +DQ +V +  K  +    CR
Sbjct: 233 CQHCFCLDCIRQWRSKDQENVELATKTVRSCPECR 267


>Z54270-3|CAA91027.2|  560|Caenorhabditis elegans Hypothetical
           protein F11C1.3 protein.
          Length = 560

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +3

Query: 654 LYQKIIDQATVTANNSNGTISRGSIYWSR 740
           ++Q I+D        S+G +  G+ YWS+
Sbjct: 31  IFQSIVDSQVYLQQKSDGQLPTGTFYWSK 59


>U55857-1|AAA98026.1|  394|Caenorhabditis elegans Hypothetical
           protein K08D10.10 protein.
          Length = 394

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -2

Query: 440 ESIHVLSPSSICGSLVLILSK 378
           E  +  SP S+CGS+V+ILSK
Sbjct: 180 EKFYDNSPFSVCGSIVVILSK 200


>Z70782-2|CAA94839.1|  387|Caenorhabditis elegans Hypothetical
           protein R04B5.3 protein.
          Length = 387

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 201 YRCQDQSSVRIQLKITQDFNSCRGNKFIFRLLKRSC 308
           + C+ Q + +I   I     SCR NK +   +KRSC
Sbjct: 57  FECRQQGACKINTIIRSICKSCRLNKCLNLGMKRSC 92


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,919,415
Number of Sequences: 27780
Number of extensions: 347759
Number of successful extensions: 837
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)