BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0544 (753 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g47530.1 68416.m05169 pentatricopeptide (PPR) repeat-containi... 36 0.029 At5g65460.1 68418.m08232 kinesin motor protein-related contains ... 29 3.3 At4g17690.1 68417.m02642 peroxidase, putative similar to peroxid... 28 5.8 At5g19570.1 68418.m02330 expressed protein 28 7.7 At3g62260.2 68416.m06995 protein phosphatase 2C, putative / PP2C... 28 7.7 At3g62260.1 68416.m06994 protein phosphatase 2C, putative / PP2C... 28 7.7 At2g38380.1 68415.m04715 peroxidase 22 (PER22) (P22) (PRXEA) / b... 28 7.7 >At3g47530.1 68416.m05169 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 591 Score = 35.9 bits (79), Expect = 0.029 Identities = 15/42 (35%), Positives = 28/42 (66%) Frame = -3 Query: 361 QQHRELMKTTLTQRTLIWHERLSNLKMNLLPRQLLKSCVIFN 236 Q H L++T+L + + ++H LS L ++L+PR + SC +F+ Sbjct: 29 QIHALLLRTSLIRNSDVFHHFLSRLALSLIPRDINYSCRVFS 70 >At5g65460.1 68418.m08232 kinesin motor protein-related contains similarity to kinesin heavy chain Length = 1281 Score = 29.1 bits (62), Expect = 3.3 Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 3/31 (9%) Frame = +1 Query: 652 LYIRKLLIRLLSLQTI---PMELFPVAPYTG 735 LYIR LL R LQ+I P+E F PYTG Sbjct: 801 LYIRSLLARSPELQSIKVSPVERFLEKPYTG 831 >At4g17690.1 68417.m02642 peroxidase, putative similar to peroxidase [Spinacia oleracea] gi|1781336|emb|CAA71495 Length = 326 Score = 28.3 bits (60), Expect = 5.8 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 3/66 (4%) Frame = +1 Query: 199 FIDVKTSHQFGFN*KSHKISIAVAAIN-SFLDYLSVHAKLEYV--ALVSFSSVHDVAVPF 369 F +VK + GF K+HK+ + N S D LS+ K + LV+ S H + Sbjct: 141 FYEVKLGRKDGFESKAHKVKGNLPLANQSVPDMLSIFKKNGFTLKELVALSGGHTIGFSH 200 Query: 370 TRDFDS 387 ++F + Sbjct: 201 CKEFSN 206 >At5g19570.1 68418.m02330 expressed protein Length = 137 Score = 27.9 bits (59), Expect = 7.7 Identities = 19/62 (30%), Positives = 31/62 (50%) Frame = +1 Query: 295 LSVHAKLEYVALVSFSSVHDVAVPFTRDFDSIRTKLPQIEEGDKTCIDSALLGVNQLVMN 474 +++ A + AL+S + + +AVP T T I G++T I ALLG + +V Sbjct: 73 INLSASATFFALLSHAPI-SLAVPVTNATTFAATAAFGILLGEETQIGLALLGTSFIVFG 131 Query: 475 EW 480 W Sbjct: 132 IW 133 >At3g62260.2 68416.m06995 protein phosphatase 2C, putative / PP2C, putative phosphoprotein phosphatase (EC 3.1.3.16) 1A-alpha - Homo sapiens, PIR:S22423 Length = 384 Score = 27.9 bits (59), Expect = 7.7 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%) Frame = +3 Query: 138 RLLNKHNDKRKCQR*FCLMCLYRCQ-DQSSVRIQLKITQDFNSCRGNKFIFRLLKRSC 308 R LN+HND +C R + L R D + + +T D RG+K + L KR C Sbjct: 314 RGLNRHNDPTRCARELVMEALGRNSFDNLTAVVVCFMTMD----RGDKPVVPLEKRRC 367 >At3g62260.1 68416.m06994 protein phosphatase 2C, putative / PP2C, putative phosphoprotein phosphatase (EC 3.1.3.16) 1A-alpha - Homo sapiens, PIR:S22423 Length = 383 Score = 27.9 bits (59), Expect = 7.7 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%) Frame = +3 Query: 138 RLLNKHNDKRKCQR*FCLMCLYRCQ-DQSSVRIQLKITQDFNSCRGNKFIFRLLKRSC 308 R LN+HND +C R + L R D + + +T D RG+K + L KR C Sbjct: 313 RGLNRHNDPTRCARELVMEALGRNSFDNLTAVVVCFMTMD----RGDKPVVPLEKRRC 366 >At2g38380.1 68415.m04715 peroxidase 22 (PER22) (P22) (PRXEA) / basic peroxidase E identical to SP|P24102 Peroxidase 22 precursor (EC 1.11.1.7) (Atperox P22) (ATPEa) (Basic peroxidase E) {Arabidopsis thaliana}; identical to cDNA class III peroxidase ATPEa, GI:17530569 Length = 349 Score = 27.9 bits (59), Expect = 7.7 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%) Frame = +3 Query: 213 DQSSVRIQLKITQDFNSCRGNKFIFRL---LKRSCQIRVRCVSVVFISSR 353 + +S R + + NS RG I R+ L+R+C RV C ++ I+S+ Sbjct: 86 NSTSFRTEKDAAPNANSARGFNVIDRMKVALERACPGRVSCADILTIASQ 135 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,462,053 Number of Sequences: 28952 Number of extensions: 304615 Number of successful extensions: 743 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 717 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 743 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1672953192 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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