Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0544
         (753 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g47530.1 68416.m05169 pentatricopeptide (PPR) repeat-containi...    36   0.029
At5g65460.1 68418.m08232 kinesin motor protein-related contains ...    29   3.3  
At4g17690.1 68417.m02642 peroxidase, putative similar to peroxid...    28   5.8  
At5g19570.1 68418.m02330 expressed protein                             28   7.7  
At3g62260.2 68416.m06995 protein phosphatase 2C, putative / PP2C...    28   7.7  
At3g62260.1 68416.m06994 protein phosphatase 2C, putative / PP2C...    28   7.7  
At2g38380.1 68415.m04715 peroxidase 22 (PER22) (P22) (PRXEA) / b...    28   7.7  

>At3g47530.1 68416.m05169 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 591

 Score = 35.9 bits (79), Expect = 0.029
 Identities = 15/42 (35%), Positives = 28/42 (66%)
 Frame = -3

Query: 361 QQHRELMKTTLTQRTLIWHERLSNLKMNLLPRQLLKSCVIFN 236
           Q H  L++T+L + + ++H  LS L ++L+PR +  SC +F+
Sbjct: 29  QIHALLLRTSLIRNSDVFHHFLSRLALSLIPRDINYSCRVFS 70


>At5g65460.1 68418.m08232 kinesin motor protein-related contains
           similarity to kinesin heavy chain
          Length = 1281

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
 Frame = +1

Query: 652 LYIRKLLIRLLSLQTI---PMELFPVAPYTG 735
           LYIR LL R   LQ+I   P+E F   PYTG
Sbjct: 801 LYIRSLLARSPELQSIKVSPVERFLEKPYTG 831


>At4g17690.1 68417.m02642 peroxidase, putative similar to peroxidase
           [Spinacia oleracea] gi|1781336|emb|CAA71495
          Length = 326

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
 Frame = +1

Query: 199 FIDVKTSHQFGFN*KSHKISIAVAAIN-SFLDYLSVHAKLEYV--ALVSFSSVHDVAVPF 369
           F +VK   + GF  K+HK+   +   N S  D LS+  K  +    LV+ S  H +    
Sbjct: 141 FYEVKLGRKDGFESKAHKVKGNLPLANQSVPDMLSIFKKNGFTLKELVALSGGHTIGFSH 200

Query: 370 TRDFDS 387
            ++F +
Sbjct: 201 CKEFSN 206


>At5g19570.1 68418.m02330 expressed protein
          Length = 137

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 19/62 (30%), Positives = 31/62 (50%)
 Frame = +1

Query: 295 LSVHAKLEYVALVSFSSVHDVAVPFTRDFDSIRTKLPQIEEGDKTCIDSALLGVNQLVMN 474
           +++ A   + AL+S + +  +AVP T       T    I  G++T I  ALLG + +V  
Sbjct: 73  INLSASATFFALLSHAPI-SLAVPVTNATTFAATAAFGILLGEETQIGLALLGTSFIVFG 131

Query: 475 EW 480
            W
Sbjct: 132 IW 133


>At3g62260.2 68416.m06995 protein phosphatase 2C, putative / PP2C,
           putative phosphoprotein phosphatase (EC 3.1.3.16)
           1A-alpha - Homo sapiens, PIR:S22423
          Length = 384

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +3

Query: 138 RLLNKHNDKRKCQR*FCLMCLYRCQ-DQSSVRIQLKITQDFNSCRGNKFIFRLLKRSC 308
           R LN+HND  +C R   +  L R   D  +  +   +T D    RG+K +  L KR C
Sbjct: 314 RGLNRHNDPTRCARELVMEALGRNSFDNLTAVVVCFMTMD----RGDKPVVPLEKRRC 367


>At3g62260.1 68416.m06994 protein phosphatase 2C, putative / PP2C,
           putative phosphoprotein phosphatase (EC 3.1.3.16)
           1A-alpha - Homo sapiens, PIR:S22423
          Length = 383

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +3

Query: 138 RLLNKHNDKRKCQR*FCLMCLYRCQ-DQSSVRIQLKITQDFNSCRGNKFIFRLLKRSC 308
           R LN+HND  +C R   +  L R   D  +  +   +T D    RG+K +  L KR C
Sbjct: 313 RGLNRHNDPTRCARELVMEALGRNSFDNLTAVVVCFMTMD----RGDKPVVPLEKRRC 366


>At2g38380.1 68415.m04715 peroxidase 22 (PER22) (P22) (PRXEA) /
           basic peroxidase E identical to SP|P24102 Peroxidase 22
           precursor (EC 1.11.1.7) (Atperox P22) (ATPEa) (Basic
           peroxidase E) {Arabidopsis thaliana}; identical to cDNA
           class III peroxidase ATPEa, GI:17530569
          Length = 349

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = +3

Query: 213 DQSSVRIQLKITQDFNSCRGNKFIFRL---LKRSCQIRVRCVSVVFISSR 353
           + +S R +     + NS RG   I R+   L+R+C  RV C  ++ I+S+
Sbjct: 86  NSTSFRTEKDAAPNANSARGFNVIDRMKVALERACPGRVSCADILTIASQ 135


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,462,053
Number of Sequences: 28952
Number of extensions: 304615
Number of successful extensions: 743
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)