Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0543
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    30   0.38 
SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual    29   0.67 
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ...    27   2.7  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    27   3.6  
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa...    26   4.7  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    26   6.3  
SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.3  

>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = -3

Query: 694  QYHHSIKIGL*NWSMIFIHLKFTTFFINIKYNKIVKL 584
            +Y H++++ L  W +IF H + TT+  NIK + I +L
Sbjct: 1316 KYEHALRVYLLVWDLIFYHFEETTY--NIKLSIINQL 1350


>SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 139 IFFSVWYLGTFSFMCLRRLYFRLRSWLYIWSW 44
           ++FS+     FS+M     YF   + LYIWSW
Sbjct: 80  VWFSLLVTSYFSYMPFAASYFSF-TMLYIWSW 110


>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 199

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 218 PSDTAKPNKETLKSLKKMVLQRFRILICRDLEVVLNLNVKDLF 346
           P+  AKP   T  +LK ++ +  +I++      V    VK+LF
Sbjct: 33  PTKNAKPAVNTASALKSVISEESKIIVSNLPTDVTEAQVKELF 75


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = -3

Query: 181  FYTCPYFWSIFLNQIFFSVWYLGTFSFMCLRRLYFRLRSWLYIWSWFYFGAWKIPLLVW 5
            F T  Y  SIF N  +    Y+ T   +   R+ F +   LY  S  Y G+  I +L++
Sbjct: 1374 FVTQNYANSIFTNLTYGGARYIATGRGLATTRVPFSVLYSLYTGSSIYLGSRLIMMLLF 1432


>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
           Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 199

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = +2

Query: 86  SSQTHKTESAQVPDRKENLVQKDTPKIRAGVKSATQEIPIKEEIPSDTAKPNKETLKSL 262
           +++    ES      K+N V+++  +I    +SAT E P+KEE   +  + + E   S+
Sbjct: 123 ANEGEHNESVPAKKVKKNTVKEE--EIEKDDESATTETPVKEEPTGEETEADHEEKASV 179


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 362 KYKITQRDPSHSNLKQPRGLYRLGFGI 282
           KY + QRD S S  K+ + L++   GI
Sbjct: 564 KYSLAQRDVSKSKNKELKELFKYSMGI 590


>SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 124 WYLGTFSFMCLRRLYFRLRSWLYIWS 47
           W +G       RRL F L+SWL I S
Sbjct: 35  WLIGNRYSAGFRRLPFSLKSWLVIGS 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,923,014
Number of Sequences: 5004
Number of extensions: 61261
Number of successful extensions: 205
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)